Rh6AG441400

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
62883800 .. 62886952
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG441400.1

Sequence Viewer

Length: 1746 bp
ATGGCAGAGAGTAACCAAAGAGAGCTGGACATTCATGATGAGTTCATGGAGGAAGATGACATTTCTGCAATCCCTGTGAGCACTACATCACCCCCAGAAATAGATTCTGCGTCGCAGGATCATGTAGATGATGTTCATAATAATCATGTCGCAACAGCGCCTCCGGTGCAAACAGATCAATCCAATCCTAGCGGAATGAGTTCACCGTCTTTGTCGGAGAAGCCACTTCTGAATCTCTCCATAGTACCTGTAAATGTACGTAGAGTAACCCCGAGGTCTCACACTCCCAATTTCTTCACGCCATTGGGTAGCCCTATTAGAAGGGCTATCCGGCTTACCAAGTTTGATCCTCAGGATGCTTGGCTCCCCATCACAGAGTCAAGAAATGGCAATGCCTATTATGCTGCCTTCCATACCCTTTGCTCCGGTATCGGAATTCCGGCCCTTGTACTTCCCGTCTCCTTCACCGTTCTCGGATGGACATGGGGGATCATAAGCTTGACGGTGGCCTTTACATGGCAGCTCTACACTCTCTGGCTTTTAGTCAAGCTTCACGAATCGACCGAAACTGGGATGCGTTACAGTAGATACCTCCAGCTCTTCAGCTCCACTTTCGGCGACAAAATGGGAAAGATCTTCGCCGTTTTCCCCATCTACTACCTCTCAGGCGGCACGTGCGTAGCCCTCATCATAGTTGGTGGTTCCAGCATGAAGCTCTTCTATGAGATGCTGTGCGGCCACGAATGCACTTCCAAGCCGCTCACCTCGGTGGAGTGGTACTTGGTGTTTACGTGCGCCGCGGTGGTTCTGTCTCAGCTGCCCAACTTGAACTCCATCGCTGGAGTCTCGTTGATCGGTGCGATCACCGCTATTGGCTACTGCACCATCATGTGGCTGGTCGCCGTCACAGAGGGCAGGCTTGACGGCGTTTCTTATGATCCTAAAAAGGAAGAATCCAATATCGCTATGATCTTCAGCATTCTCAATGCTCTTGGGATTATTGCTTTTGCTTTTAAGGGTCACAATCTTACCCTAGAAATTCAGGTAATTATTTATACTCAAACAACATCATTAAGAGTTAGAAACTTGATTCAATTTGTTACTAAAAAATGTGTTTTTATACAGGCAACTATGCCTTCAAGTGACAAAAAGCCATCCCATGTGCCAATGTGGAGAGGGGTAAAGTTTGCTTATGTAATCATCGCATTGTGCTTATTTCCTCTAGCAATTGGTGGATATTGGGCGTATGGACACATGATACCACCAAATGGGGGAATGCTGACTGCAATTTATCAGTTCCACGGGCGTGACACTTCGACATTCATTCTTGCACTGACAGCCTTATTCATCATTGTCAATGCTGTAAGCTCATTCCAAATCTTTGGGATGCCCATGTTCGATGATATGGAGTCCAAGTACATCACTCGCTTTAACAAACCGTGCCCGTGGTGGCTCCGATCAATTTCTCGGGCCATGTTTGGATTTGGCTGCTTCTTCATGGCGGTCGCAATCCCCTTCTTGGGTAGCTTTGCTGGTCTCATTGGAGGGATTGCCATACCGATTACCTTTGCCTATCCTTGTTTCTTGTGGTTGAAGATTAAGAAGCCCAAAAGGTACAGCTTCATGTGGTTGCTAAATTGGACACTGGGACTTTCTGGCACCGCTCTCAGTATTATACTCATAGCCGCTGGCATTTATGTTGTCATCGACACCGGAATTCAAGTCAGCTTCTTCAAGCCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

64.46

Weight (kDa)

8.38

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 129 - 348 3.5e-33 Transmembrane amino acid transporter protein
Aa_trans PF01490 373 - 569 5.9e-23 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017612)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37650
malus_domestica MD08G1004100.v1.1
prunus_persica Prupe.1G356000_v2.0.a1
pyrus_communis pycom08g00300
rosa_chinensis RchiOBHm_Chr6g0304081
rosa_laevigata RLG00000011019
rosa_multiflora Rmu_sc0003805.1_g000010
rosa_roxburghii Rroxscaffold_7G00164110
rosa_rugosa Rorug06G0327400
rosa_samantha Rh6AG441400 Rh6DG440800
rosa_wichuraiana Rw6G038250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1658
AccB7I CCANNNNNTGG 2 cut(s) 891, 1268
AccBSI CCGCTC 2 cut(s) 760, 1664
AccII CGCG 1 cut(s) 800
AclWI GGATC 4 cut(s) 126, 341, 497, 932
AcoI YGGCCR 1 cut(s) 736
AcsI RAATTY 3 cut(s) 435, 1038, 1716
AcuI CTGAAG 2 cut(s) 586, 958
AcvI CACGTG 1 cut(s) 675
AfaI GTAC 6 cut(s) 246, 258, 450, 779, 1418, 1616
AfiI CCNNNNNNNGG 7 cut(s) 516, 570, 891, 1268, 1271, 1519, 1520
AgsI TTSAA 6 cut(s) 829, 1094, 1140, 1594, 1721, 1735
AleI CACNNNNGTG 2 cut(s) 767, 1305
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 5 cut(s) 282, 463, 816, 850, 1541
AlwI GGATC 4 cut(s) 126, 341, 497, 932
Ama87I CYCGRG 2 cut(s) 271, 1467
AoxI GGCC 4 cut(s) 441, 507, 736, 1470
ApeKI GCWGC 4 cut(s) 404, 520, 817, 1488
ApoI RAATTY 3 cut(s) 435, 1038, 1716
Asp700I GAANNNNTTC 2 cut(s) 199, 716
AspLEI GCGC 2 cut(s) 160, 797
AspS9I GGNCC 2 cut(s) 442, 1470
AsuHPI GGTGA 5 cut(s) 81, 195, 457, 754, 856
AvaI CYCGRG 2 cut(s) 271, 1467
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 1445
BanI GGYRCC 1 cut(s) 1658
BbrPI CACGTG 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 4 cut(s) 391, 532, 804, 1475
BccI CCATC 6 cut(s) 377, 471, 659, 842, 893, 1162
BceAI ACGGC 3 cut(s) 626, 887, 940
BcoDI GTCTC 5 cut(s) 282, 463, 816, 850, 1541
BfaI CTAG 3 cut(s) 189, 1034, 1223
BfoI RGCGCY 1 cut(s) 161
BglII AGATCT 1 cut(s) 633
BisI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1489, 1686
BlsI GCNGC 9 cut(s) 406, 522, 671, 737, 759, 799, 819, 1490, 1687
BmeT110I CYCGRG 2 cut(s) 271, 1467
BmgT120I GGNCC 2 cut(s) 442, 1470
BmiI GGNNCC 4 cut(s) 365, 703, 1454, 1660
BmrI ACTGGG 2 cut(s) 579, 1655
BmsI GCATC 4 cut(s) 346, 564, 717, 1377
BmuI ACTGGG 2 cut(s) 579, 1655
BpmI CTGGAG 2 cut(s) 578, 861
BsaAI YACGTR 3 cut(s) 260, 675, 792
BsaI GGTCTC 2 cut(s) 282, 1541
BsaJI CCNNGG 5 cut(s) 272, 765, 798, 1300, 1445
BsaWI WCCGGW 3 cut(s) 163, 425, 1712
BsaXI ACNNNNNCTCC 6 cut(s) 145, 175, 815, 845, 1400, 1430
Bsc4I CCNNNNNNNGG 7 cut(s) 516, 570, 891, 1268, 1271, 1519, 1520
Bse1I ACTGG 2 cut(s) 574, 1650
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 397
BseDI CCNNGG 5 cut(s) 272, 765, 798, 1300, 1445
BseGI GGATG 5 cut(s) 361, 482, 579, 1154, 1392
BseLI CCNNNNNNNGG 7 cut(s) 516, 570, 891, 1268, 1271, 1519, 1520
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 4 cut(s) 365, 678, 827, 1681
BseNI ACTGG 2 cut(s) 574, 1650
BseSI GKGCMC 1 cut(s) 1445
BseXI GCAGC 4 cut(s) 391, 532, 804, 1475
BsgI GTGCAG 1 cut(s) 865
Bsh1236I CGCG 1 cut(s) 800
Bsh1285I CGRYCG 2 cut(s) 564, 1506
BshFI GGCC 4 cut(s) 443, 509, 738, 1472
BshNI GGYRCC 1 cut(s) 1658
BsiEI CGRYCG 2 cut(s) 564, 1506
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 2 cut(s) 271, 1467
BsiSI CCGG 5 cut(s) 164, 331, 426, 440, 1713
BslFI GGGAC 1 cut(s) 1662
BslI CCNNNNNNNGG 7 cut(s) 516, 570, 891, 1268, 1271, 1519, 1520
BsmAI GTCTC 5 cut(s) 282, 463, 816, 850, 1541
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 1662
BsmI GAATGC 3 cut(s) 749, 978, 1281
BsnI GGCC 4 cut(s) 443, 509, 738, 1472
Bso31I GGTCTC 2 cut(s) 282, 1541
BsoBI CYCGRG 2 cut(s) 271, 1467
Bsp1286I GDGCHC 2 cut(s) 83, 1445
BspANI GGCC 4 cut(s) 443, 509, 738, 1472
BspCNI CTCAG 4 cut(s) 364, 677, 826, 1680
BspFNI CGCG 1 cut(s) 800
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 365, 703, 1454, 1660
BspPI GGATC 4 cut(s) 126, 341, 497, 932
BspQI GCTCTTC 2 cut(s) 605, 722
BspT107I GGYRCC 1 cut(s) 1658
BspTNI GGTCTC 2 cut(s) 282, 1541
BsrBI CCGCTC 2 cut(s) 760, 1664
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 2 cut(s) 574, 1650
BssECI CCNNGG 5 cut(s) 272, 765, 798, 1300, 1445
Bst4CI ACNGT 5 cut(s) 207, 469, 505, 584, 1440
Bst6I CTCTTC 2 cut(s) 605, 722
BstBAI YACGTR 3 cut(s) 260, 675, 792
BstC8I GCNNGC 2 cut(s) 917, 1690
BstDEI CTNAG 5 cut(s) 351, 664, 813, 1667, 1740
BstDSI CCRYGG 3 cut(s) 798, 1300, 1445
BstF5I GGATG 5 cut(s) 361, 482, 579, 1154, 1392
BstFNI CGCG 1 cut(s) 800
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 797
BstMAI GTCTC 5 cut(s) 282, 463, 816, 850, 1541
BstMCI CGRYCG 2 cut(s) 564, 1506
BstMWI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1337
BstSLI GKGCMC 1 cut(s) 1445
BstSNI TACGTA 1 cut(s) 260
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 4 cut(s) 391, 532, 804, 1475
BstX2I RGATCY 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 1382
BstYI RGATCY 1 cut(s) 633
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 4 cut(s) 443, 509, 738, 1472
BtgI CCRYGG 3 cut(s) 798, 1300, 1445
BtgZI GCGATG 2 cut(s) 820, 1186
BtsCI GGATG 5 cut(s) 361, 482, 579, 1154, 1392
BtsIMutI CAGTG 2 cut(s) 1331, 1643
Cac8I GCNNGC 2 cut(s) 917, 1690
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 160, 797
Cfr13I GGNCC 2 cut(s) 442, 1470
Cfr42I CCGCGG 1 cut(s) 801
CseI GACGC 1 cut(s) 99
Csp6I GTAC 6 cut(s) 245, 257, 449, 778, 1417, 1615
CviQI GTAC 6 cut(s) 245, 257, 449, 778, 1417, 1615
DdeI CTNAG 5 cut(s) 351, 664, 813, 1667, 1740
EaeI YGGCCR 1 cut(s) 736
Eam1104I CTCTTC 2 cut(s) 605, 722
EarI CTCTTC 2 cut(s) 605, 722
Eco105I TACGTA 1 cut(s) 260
Eco31I GGTCTC 2 cut(s) 282, 1541
Eco57I CTGAAG 2 cut(s) 586, 958
Eco72I CACGTG 1 cut(s) 675
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 271, 1467
EcoRI GAATTC 2 cut(s) 435, 1716
Esp3I CGTCTC 1 cut(s) 463
FaqI GGGAC 1 cut(s) 1662
Fnu4HI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1489, 1686
FokI GGATG 5 cut(s) 368, 489, 586, 1141, 1399
Fsp4HI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1489, 1686
FspBI CTAG 3 cut(s) 189, 1034, 1223
GlaI GCGC 2 cut(s) 159, 796
GluI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1489, 1686
GsuI CTGGAG 2 cut(s) 578, 861
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 4 cut(s) 443, 509, 738, 1472
HapII CCGG 5 cut(s) 164, 331, 426, 440, 1713
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 160, 797
Hin6I GCGC 2 cut(s) 158, 795
HinP1I GCGC 2 cut(s) 158, 795
HindIII AAGCTT 2 cut(s) 496, 548
HinfI GANTC 8 cut(s) 104, 232, 377, 557, 843, 953, 1090, 1409
HpaII CCGG 5 cut(s) 164, 331, 426, 440, 1713
HphI GGTGA 5 cut(s) 81, 195, 457, 754, 856
Hpy166II GTNNAC 2 cut(s) 203, 789
Hpy188I TCNGA 5 cut(s) 217, 231, 434, 476, 1457
Hpy188III TCNNGA 4 cut(s) 35, 353, 381, 554
Hpy8I GTNNAC 2 cut(s) 203, 789
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 5 cut(s) 315, 418, 472, 1146, 1525
HpyCH4III ACNGT 5 cut(s) 207, 469, 505, 584, 1440
HpyCH4IV ACGT 3 cut(s) 259, 674, 791
HpyCH4V TGCA 6 cut(s) 68, 169, 747, 882, 1286, 1331
HpyF10VI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1337
HpyF3I CTNAG 5 cut(s) 351, 664, 813, 1667, 1740
HpySE526I ACGT 3 cut(s) 259, 674, 791
HspAI GCGC 2 cut(s) 158, 795
KspI CCGCGG 1 cut(s) 801
LguI GCTCTTC 2 cut(s) 605, 722
LmnI GCTCC 4 cut(s) 369, 428, 611, 1458
Lsp1109I GCAGC 4 cut(s) 391, 532, 804, 1475
LweI GCATC 4 cut(s) 346, 564, 717, 1377
MaeI CTAG 3 cut(s) 189, 1034, 1223
MaeII ACGT 3 cut(s) 259, 674, 791
MaeIII GTNAC 8 cut(s) 11, 265, 578, 904, 1019, 1099, 1142, 1307
MbiI CCGCTC 2 cut(s) 760, 1664
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 2 cut(s) 83, 1445
MlyI GAGTC 3 cut(s) 386, 852, 1418
MmeI TCCRAC 1 cut(s) 195
MroXI GAANNNNTTC 2 cut(s) 199, 716
MseI TTAA 4 cut(s) 1014, 1073, 1431, 1599
MslI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1305
MspA1I CMGCKG 3 cut(s) 800, 817, 1688
MspI CCGG 5 cut(s) 164, 331, 426, 440, 1713
MunI CAATTG 1 cut(s) 1227
Mva1269I GAATGC 3 cut(s) 749, 978, 1281
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1337
NlaIV GGNNCC 4 cut(s) 365, 703, 1454, 1660
NmuCI GTSAC 4 cut(s) 904, 1019, 1142, 1307
OliI CACNNNNGTG 2 cut(s) 767, 1305
PagI TCATGA 1 cut(s) 34
PciSI GCTCTTC 2 cut(s) 605, 722
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PctI GAATGC 3 cut(s) 749, 978, 1281
PdmI GAANNNNTTC 2 cut(s) 199, 716
PfeI GAWTC 5 cut(s) 104, 232, 557, 953, 1090
PflMI CCANNNNNTGG 2 cut(s) 891, 1268
PkrI GCNGC 9 cut(s) 406, 522, 671, 737, 759, 799, 819, 1490, 1687
PleI GAGTC 3 cut(s) 385, 851, 1417
PmaCI CACGTG 1 cut(s) 675
PmlI CACGTG 1 cut(s) 675
PpsI GAGTC 3 cut(s) 385, 851, 1417
Ppu21I YACGTR 3 cut(s) 260, 675, 792
PspCI CACGTG 1 cut(s) 675
PspN4I GGNNCC 4 cut(s) 365, 703, 1454, 1660
PspPI GGNCC 2 cut(s) 442, 1470
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PsuI RGATCY 1 cut(s) 633
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 6 cut(s) 246, 258, 450, 779, 1418, 1616
RsaNI GTAC 6 cut(s) 245, 257, 449, 778, 1417, 1615
RseI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1305
SacII CCGCGG 1 cut(s) 801
SapI GCTCTTC 2 cut(s) 605, 722
SaqAI TTAA 4 cut(s) 1014, 1073, 1431, 1599
SatI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1489, 1686
Sau96I GGNCC 2 cut(s) 442, 1470
SchI GAGTC 3 cut(s) 386, 852, 1418
SduI GDGCHC 2 cut(s) 83, 1445
SfaNI GCATC 4 cut(s) 346, 564, 717, 1377
Sfr303I CCGCGG 1 cut(s) 801
SgrBI CCGCGG 1 cut(s) 801
SmiMI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1305
SnaBI TACGTA 1 cut(s) 260
SspMI CTAG 3 cut(s) 189, 1034, 1223
TaaI ACNGT 5 cut(s) 207, 469, 505, 584, 1440
TaiI ACGT 3 cut(s) 262, 677, 794
TaqI TCGA 4 cut(s) 560, 1316, 1398, 1707
TaqII GACCGA 1 cut(s) 578
TatI WGTACW 2 cut(s) 448, 1416
TauI GCSGC 5 cut(s) 672, 738, 760, 800, 1688
TfiI GAWTC 5 cut(s) 104, 232, 557, 953, 1090
Tru1I TTAA 4 cut(s) 1014, 1073, 1431, 1599
Tru9I TTAA 4 cut(s) 1014, 1073, 1431, 1599
TscAI CASTG 2 cut(s) 1338, 1650
TseFI GTSAC 4 cut(s) 904, 1019, 1142, 1307
TseI GCWGC 4 cut(s) 404, 520, 817, 1488
Tsp45I GTSAC 4 cut(s) 904, 1019, 1142, 1307
TspDTI ATGAA 8 cut(s) 23, 34, 125, 725, 1312, 1336, 1486, 1612
TspRI CASTG 2 cut(s) 1338, 1650
Van91I CCANNNNNTGG 2 cut(s) 891, 1268
XapI RAATTY 3 cut(s) 435, 1038, 1716
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmnI GAANNNNTTC 2 cut(s) 199, 716
XspI CTAG 3 cut(s) 189, 1034, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.