Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004402

Physical Location & Seq

Genomic Coordinates Reverse (-)

48029677 .. 48034082

Gene Structure 4406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGAAGGTGATGGAGAGAGTCGGGAGAGAAGCGAGAAGGTCAAGCATGGCAGCTGCTGCAACTGATGGACTTTCCGGCCGCCGTGAGAGAGTGAGTAACAAGCGTAGGAGAGGAGAAGAGAGCCATGGACGCATGGATGAGGAAGATTGCAAGGTGGAGGTGGAAGACAATATGGTGCTTTCGCAGATGTCGTCATCATCATCGGCTCGCCGGAGAAACCATATGGTGGTGAAAGTCTCGAAGCAAGATCAGCCGTTGAAGTTGATCGGAGTTCAAGTTCCGAGGAAGGCTCGTTCAGCTTCAGGAAAACGGTCGCGTGAAAATAGTTCTTCAGGAAATGATGGGGTTGGGAAAGATCAGAATCTGCAGAAACTGAGCGTAGAACCGAGGAAGAAGATGAAACCAACTGGAGTCAAGAATCGACCTCCAAAATCGTTGAAATCGTCTTCTAGGACTGTAGAGGAGGAAATTGAGATTGAGATCGCCGAAGTTCTTTTCGGGTTGATGAAGCAATCTCAGAGCTCTAGGGATAGTGATAGTGTTGAAAGCTCTCCGTCAAACCGGGAAGATAAAGATAGATATGGCATTAGAAACGATTCTAAGACTTCAATCTCGGAACAGGAAAACAGCCATGTCTCTGATCCCGAGCTCAAAAATGTCTCCAAGGAGAACAATTCTAATGCAGAAGCAGTTGAAGTAGAAAGTGACCAGAAGCCAAAAATGGAAACTTCTTTGCCGAATTGGGAGCCGAAATCTGAAGATGTATCCGGGTCAGTAGAGTTGCAGAAGGAGGAAGCCAAGCCATTAGAGGTACCGGAGCTTAAAAGCAAGAGAGAGGACAAGTTTGAATTTGATCTCATGGCTCCTCCTCCTATGGAGGATTCAGCATCTGATAAACTTGTGGCGGAAGCTGTGCTTGAAACACTGCAAGACAAGAAGATAGAGGTAATCACGGAAAAGATAAATGAGAATCCAAACCGAGATAGTGGCACTAAATTACAACAGCAACCTAAGACTATCATTCCTAAACTGGAGAGAACTGACTGGCGAAGCGGTCTTTCAGCCACCACATTACAGCCCGGGAATTCATCTCTGTCTCAATCATGTGCTAAGACTAGATGCGCAACTCACCATTACATCGCTCGCAACATATACTTGCACCAGAAGGTTACAAATATGAACAATCTCTGGCCAGCAGCAGGTGGTTCTGCTCCTCTATGTGGCACCAAGCCAGACATAGTTGTTGGAAACCCTAGTCTAGGAAGCGTCTCAGGTCAGAGTGCAAAAGAATCAAAAGATCAAAGTTCTGAGGCTGCATTCATAGAATCATCAAGAAGCAAGAAGCTTGTGGCTCAACAATCTCCATCACAGCCGGCCTCTGCTGGTAATCTAATGCATGGACCTACTTTCAAATTCTCTGTGGAACAAAATCAAGCATCAGCTGCAGCAACCAGTAATCCATCTGGTCCTTTGAAATATACAGAGTTGACAAACAATGCATCACATTTTAGTCATTCAGCATTGTCAACAGTAGCTGCAGCAAACCTCAGTAGCCCGAATATGACATTCCAAGAAGGTCCGTACTTAGCAATTAATGGGTACTCATTCCCCATTTCAACTCCTTCAGGAACAACACTGGCATTTCAAGGAGGAAACTCTACTCAGGCAGTGCCTTCATACAATGGTCCTTTCTATTCAAATCAAATGTTTCACCCTTCTCAGCTTCATCAGCAACAGTCTCACTCGCAGTTGCAGCATCAAGTCCGATCAATCCATCAAAAGAACACGGGAATTTCAACCGATTCATCGTTGTTTCACAGGCAACTAGAGTCTCAGCAACCGCAGAAAACACAATTTACCAGTATGCAATCACAGCAGTCACAAAAGCAGTATGTGCCACAATCCCTTCAGCCTTGCAAGCCTGAGGGTGACATCAATGGGGGGAATACTGCATCTTCTCAGGCGCAACGTAGTGTTTATGGTTATGGGCAGAATTTTGCAGTGCCACTTCAACCCATGAACTTTACCATGATGCCCTATGTAACATTTAGTGGTGGTGGCAGTGGAAATCACATTGAGCAATCACAACAACAGGACTTAAAGGGTGTCTTTGGCATGTCATTTGCCTCCATCAGTGGAAATAAGGGTACAGGTAAACTCCTGAACTTTTCATCCATGTCACAAAATCCAGCAATGTATCAAACCCTTCCAGCAACCCAAGGTGCACACCAAAACCATCATCACCATGTATCCGAAAGGAAGACTGGAAGCGTTTCCGACAATCCTGATCATGATGGGTCAAAAGCTGTTACTGGGAGGTCAACAGTGCAGACCCTTGTTTTTGATAATTCAGCAACAAATCTCAACTTCACAACCTCGAATTCTCATCAACAGCACCTCTACCAGTTTCAGCTTCAGCAGCAGCAACCTGCTATGGCAGCTAAGAGTAAAGCACCAAAGAGCGCTCCTGTCTTCTCACAAGCTCTAGTACAGTGCAATTCTTCTGTCCAATCTCCTAACAACTCCGGAAGATCATTGACTTCCCAAATTCCGATTACAACTTCAGCAGTCAATAGTTTTCTTCAACAACAAGGAAGAGCTTTACAAGGTCAGACTCTTCTATCTTTTGGAGGAAGCCCTAAATCGTCCTTAGCAGTACCACAAGGTCAACTCACTAACCCTAGTTTGCTGACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

899

Amino Acids

97.94

Weight (kDa)

9.13

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47670
fragaria_vesca	FvH4_2g37660 FvH4_2g40670
malus_domestica	MD08G1004200.v1.1 MD08G1040200.v1.1 MD15G1034600.v1.1
prunus_persica	Prupe.1G356100_v2.0.a1 Prupe.1G388700_v2.0.a1
pyrus_communis	pycom08g03240 pycom15g03190
rosa_chinensis	RchiOBHm_Chr6g0299981 RchiOBHm_Chr6g0304071
rosa_laevigata	RLG00000011020 RLG00000011374
rosa_multiflora	Rmu_co8464929.1_g000001 Rmu_sc0001370.1_g000004 Rmu_sc0003805.1_g000011 Rmu_sc0031199.1_g000003
rosa_roxburghii	Rroxscaffold_7G00164130 Rroxscaffold_7G00168220
rosa_rugosa	Rorug06G0293300 Rorug06G0327400
rosa_samantha	Rh6AG404900 Rh6AG441300 Rh6BG413300 Rh6BG461500 Rh6CG419300 Rh6CG453400 Rh6DG406000 Rh6DG440700
rosa_wichuraiana	Rw6G035430 Rw6G038240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1190
Acc16I	TGCGCA	1 cut(s)	1123
Acc36I	ACCTGC	2 cut(s)	1190, 2437
Acc65I	GGTACC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	811, 1223
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	2525
AciI	CCGC	4 cut(s)	79, 905, 1053, 1841
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	2 cut(s)	76, 1190
AcsI	RAATTY	7 cut(s)	848, 1084, 1412, 1791, 1993, 2380, 2547
AcuI	CTGAAG	7 cut(s)	285, 315, 777, 1608, 1892, 2399, 2547
AfaI	GTAC	6 cut(s)	813, 1583, 1601, 2149, 2490, 2658
AfeI	AGCGCT	1 cut(s)	2464
AfiI	CCNNNNNNNGG	4 cut(s)	226, 1199, 1220, 1259
AloI	GAACNNNNNNTCC	6 cut(s)	261, 277, 293, 309, 2156, 2188
Alw21I	GWGCWC	3 cut(s)	524, 651, 2227
Alw26I	GTCTC	7 cut(s)	241, 640, 664, 1101, 1273, 1743, 1836
Alw44I	GTGCAC	1 cut(s)	2223
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	5 cut(s)	56, 364, 373, 890, 1535
Ama87I	CYCGRG	2 cut(s)	644, 1079
Aor13HI	TCCGGA	1 cut(s)	2525
Aor51HI	AGCGCT	1 cut(s)	2464
AoxI	GGCC	3 cut(s)	76, 1190, 1374
ApaLI	GTGCAC	1 cut(s)	2223
ApoI	RAATTY	7 cut(s)	848, 1084, 1412, 1791, 1993, 2380, 2547
AseI	ATTAAT	1 cut(s)	1593
Asp700I	GAANNNNTTC	2 cut(s)	595, 2272
Asp718I	GGTACC	1 cut(s)	811
AspLEI	GCGC	3 cut(s)	1124, 1966, 2465
AspS9I	GGNCC	4 cut(s)	1400, 1466, 1577, 1685
AsuC2I	CCSGG	4 cut(s)	563, 769, 1080, 1081
AsuHPI	GGTGA	6 cut(s)	19, 241, 1121, 1703, 1940, 2234
AvaI	CYCGRG	2 cut(s)	644, 1079
AvaII	GGWCC	4 cut(s)	1400, 1466, 1577, 1685
AxyI	CCTNAGG	1 cut(s)	1923
BaeGI	GKGCMC	1 cut(s)	2227
BalI	TGGCCA	1 cut(s)	1192
BanI	GGYRCC	2 cut(s)	811, 1223
BanII	GRGCYC	2 cut(s)	524, 651
BbsI	GAAGAC	4 cut(s)	171, 438, 2267, 2464
Bbv12I	GWGCWC	3 cut(s)	524, 651, 2227
BccI	CCATC	9 cut(s)	4, 59, 335, 1372, 1468, 1782, 2138, 2244, 2288
BceAI	ACGGC	2 cut(s)	66, 238
BciVI	GTATCC	2 cut(s)	775, 2260
BclI	TGATCA	1 cut(s)	2287
BcnI	CCSGG	4 cut(s)	563, 769, 1080, 1081
BcoDI	GTCTC	7 cut(s)	241, 640, 664, 1101, 1273, 1743, 1836
BfaI	CTAG	8 cut(s)	450, 525, 1116, 1254, 1259, 1826, 2486, 2682
BfmI	CTRYAG	4 cut(s)	365, 456, 1443, 1536
BfoI	RGCGCY	1 cut(s)	2466
BfuAI	ACCTGC	2 cut(s)	1190, 2437
BfuI	GTATCC	2 cut(s)	775, 2260
Bme1390I	CCNGG	4 cut(s)	563, 769, 1080, 1081
Bme18I	GGWCC	4 cut(s)	1400, 1466, 1577, 1685
BmeT110I	CYCGRG	2 cut(s)	644, 1079
BmgT120I	GGNCC	4 cut(s)	1400, 1466, 1577, 1685
BmiI	GGNNCC	4 cut(s)	747, 813, 864, 1225
BmrFI	CCNGG	4 cut(s)	563, 769, 1080, 1081
BmrI	ACTGGG	1 cut(s)	2322
BmsI	GCATC	7 cut(s)	896, 1109, 1445, 1508, 1765, 1961, 2022
BmuI	ACTGGG	1 cut(s)	2322
BpiI	GAAGAC	4 cut(s)	171, 438, 2267, 2464
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	2 cut(s)	429, 1052
Bpu10I	CCTNAGC	1 cut(s)	2650
BpuMI	CCSGG	4 cut(s)	563, 769, 1080, 1081
BsaBI	GATNNNNATC	2 cut(s)	360, 479
BsaJI	CCNNGG	6 cut(s)	124, 281, 386, 663, 1079, 2218
BsaWI	WCCGGW	2 cut(s)	814, 2525
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 1199, 1220, 1259
Bse118I	RCCGGY	1 cut(s)	1372
Bse1I	ACTGG	9 cut(s)	412, 1035, 1049, 1452, 1641, 1860, 2269, 2317, 2404
Bse21I	CCTNAGG	1 cut(s)	1923
Bse3DI	GCAATG	1 cut(s)	2199
Bse8I	GATNNNNATC	2 cut(s)	360, 479
BseAI	TCCGGA	1 cut(s)	2525
BseDI	CCNNGG	6 cut(s)	124, 281, 386, 663, 1079, 2218
BseGI	GGATG	2 cut(s)	142, 2171
BseJI	GATNNNNATC	2 cut(s)	360, 479
BseLI	CCNNNNNNNGG	4 cut(s)	226, 1199, 1220, 1259
BseMI	GCAATG	1 cut(s)	2199
BseNI	ACTGG	9 cut(s)	412, 1035, 1049, 1452, 1641, 1860, 2269, 2317, 2404
BseRI	GAGGAG	5 cut(s)	126, 476, 855, 858, 1203
BseSI	GKGCMC	1 cut(s)	2227
BseX3I	CGGCCG	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	2348
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	2 cut(s)	79, 314
BshFI	GGCC	3 cut(s)	78, 1192, 1376
BshNI	GGYRCC	2 cut(s)	811, 1223
BsiEI	CGRYCG	2 cut(s)	79, 314
BsiHKAI	GWGCWC	3 cut(s)	524, 651, 2227
BsiHKCI	CYCGRG	2 cut(s)	644, 1079
BsiSI	CCGG	8 cut(s)	75, 211, 562, 768, 815, 1080, 1373, 2526
BslI	CCNNNNNNNGG	4 cut(s)	226, 1199, 1220, 1259
BsmAI	GTCTC	7 cut(s)	241, 640, 664, 1101, 1273, 1743, 1836
BsmBI	CGTCTC	1 cut(s)	1273
BsmI	GAATGC	1 cut(s)	1316
BsnI	GGCC	3 cut(s)	78, 1192, 1376
BsoBI	CYCGRG	2 cut(s)	644, 1079
Bsp1286I	GDGCHC	3 cut(s)	524, 651, 2227
Bsp13I	TCCGGA	1 cut(s)	2525
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	4 cut(s)	79, 905, 1053, 1841
BspANI	GGCC	3 cut(s)	78, 1192, 1376
BspEI	TCCGGA	1 cut(s)	2525
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	2290
BspLI	GGNNCC	4 cut(s)	747, 813, 864, 1225
BspMAI	CTGCAG	3 cut(s)	369, 1447, 1540
BspMI	ACCTGC	2 cut(s)	1190, 2437
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	2590
BspT107I	GGYRCC	2 cut(s)	811, 1223
BsrDI	GCAATG	1 cut(s)	2199
BsrFI	RCCGGY	1 cut(s)	1372
BsrI	ACTGG	9 cut(s)	412, 1035, 1049, 1452, 1641, 1860, 2269, 2317, 2404
BssAI	RCCGGY	1 cut(s)	1372
BssECI	CCNNGG	6 cut(s)	124, 281, 386, 663, 1079, 2218
BssT1I	CCWWGG	3 cut(s)	124, 663, 2218
Bst4CI	ACNGT	6 cut(s)	312, 457, 1531, 1737, 2326, 2493
Bst6I	CTCTTC	3 cut(s)	111, 2590, 2622
BstAPI	GCANNNNNTGC	3 cut(s)	56, 1442, 1894
BstC8I	GCNNGC	5 cut(s)	208, 1144, 1194, 1374, 1919
BstDSI	CCRYGG	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	1257
BstF5I	GGATG	2 cut(s)	142, 2171
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	2466
BstHHI	GCGC	3 cut(s)	1124, 1966, 2465
BstMAI	GTCTC	7 cut(s)	241, 640, 664, 1101, 1273, 1743, 1836
BstMCI	CGRYCG	2 cut(s)	79, 314
BstNSI	RCATGY	1 cut(s)	2119
BstSCI	CCNGG	4 cut(s)	561, 767, 1078, 1079
BstSFI	CTRYAG	4 cut(s)	365, 456, 1443, 1536
BstSLI	GKGCMC	1 cut(s)	2227
BstUI	CGCG	1 cut(s)	316
BstV2I	GAAGAC	4 cut(s)	171, 438, 2267, 2464
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	1923
BsuI	GTATCC	2 cut(s)	775, 2260
BsuRI	GGCC	3 cut(s)	78, 1192, 1376
BtgI	CCRYGG	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	1123
BtsCI	GGATG	2 cut(s)	142, 2171
BtsI	GCAGTG	4 cut(s)	923, 1674, 2007, 2068
BtsIMutI	CAGTG	8 cut(s)	923, 1634, 1674, 2007, 2068, 2140, 2331, 2498
BveI	ACCTGC	2 cut(s)	1190, 2437
Cac8I	GCNNGC	5 cut(s)	208, 1144, 1194, 1374, 1919
CaiI	CAGNNNCTG	5 cut(s)	56, 364, 373, 890, 1535
CciI	TCATGA	1 cut(s)	2290
CfoI	GCGC	3 cut(s)	1124, 1966, 2465
Cfr10I	RCCGGY	1 cut(s)	1372
Cfr13I	GGNCC	4 cut(s)	1400, 1466, 1577, 1685
Cfr9I	CCCGGG	1 cut(s)	1079
CseI	GACGC	2 cut(s)	138, 1255
Csp6I	GTAC	6 cut(s)	812, 1582, 1600, 2148, 2489, 2657
CviQI	GTAC	6 cut(s)	812, 1582, 1600, 2148, 2489, 2657
EaeI	YGGCCR	2 cut(s)	76, 1190
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	111, 2590, 2622
EarI	CTCTTC	3 cut(s)	111, 2590, 2622
EciI	GGCGGA	1 cut(s)	920
Ecl136II	GAGCTC	2 cut(s)	522, 649
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	124, 663, 2218
Eco24I	GRGCYC	2 cut(s)	524, 651
Eco47I	GGWCC	4 cut(s)	1400, 1466, 1577, 1685
Eco47III	AGCGCT	1 cut(s)	2464
Eco52I	CGGCCG	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	522, 649
Eco57I	CTGAAG	7 cut(s)	285, 315, 777, 1608, 1892, 2399, 2547
Eco81I	CCTNAGG	1 cut(s)	1923
Eco88I	CYCGRG	2 cut(s)	644, 1079
EcoICRI	GAGCTC	2 cut(s)	522, 649
EcoNI	CCTNNNNNAGG	1 cut(s)	1257
EcoRI	GAATTC	2 cut(s)	1084, 2380
EcoT14I	CCWWGG	3 cut(s)	124, 663, 2218
EcoT22I	ATGCAT	2 cut(s)	1398, 1501
EcoT38I	GRGCYC	2 cut(s)	524, 651
ErhI	CCWWGG	3 cut(s)	124, 663, 2218
Esp3I	CGTCTC	1 cut(s)	1273
FalI	AAGNNNNNCTT	4 cut(s)	900, 932, 2093, 2125
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	2287
FokI	GGATG	2 cut(s)	149, 2158
FriOI	GRGCYC	2 cut(s)	524, 651
FspBI	CTAG	8 cut(s)	450, 525, 1116, 1254, 1259, 1826, 2486, 2682
FspI	TGCGCA	1 cut(s)	1123
GlaI	GCGC	3 cut(s)	1123, 1965, 2464
GsuI	CTGGAG	2 cut(s)	429, 1052
HaeII	RGCGCY	1 cut(s)	2466
HaeIII	GGCC	3 cut(s)	78, 1192, 1376
HapII	CCGG	8 cut(s)	75, 211, 562, 768, 815, 1080, 1373, 2526
HgaI	GACGC	2 cut(s)	138, 1255
HhaI	GCGC	3 cut(s)	1124, 1966, 2465
Hin6I	GCGC	3 cut(s)	1122, 1964, 2463
HinP1I	GCGC	3 cut(s)	1122, 1964, 2463
HincII	GTYRAC	4 cut(s)	1488, 1527, 2322, 2669
HindII	GTYRAC	4 cut(s)	1488, 1527, 2322, 2669
HindIII	AAGCTT	1 cut(s)	1343
HpaII	CCGG	8 cut(s)	75, 211, 562, 768, 815, 1080, 1373, 2526
HphI	GGTGA	6 cut(s)	19, 241, 1121, 1703, 1940, 2234
Hpy166II	GTNNAC	6 cut(s)	1488, 1527, 2156, 2225, 2322, 2669
Hpy8I	GTNNAC	6 cut(s)	1488, 1527, 2156, 2225, 2322, 2669
HpyCH4III	ACNGT	6 cut(s)	312, 457, 1531, 1737, 2326, 2493
HpyCH4IV	ACGT	1 cut(s)	1969
HpySE526I	ACGT	1 cut(s)	1969
HspAI	GCGC	3 cut(s)	1122, 1964, 2463
Kpn2I	TCCGGA	1 cut(s)	2525
KpnI	GGTACC	1 cut(s)	815
KroI	GCCGGC	1 cut(s)	1372
KroNI	GCCGGC	1 cut(s)	1374
Ksp22I	TGATCA	1 cut(s)	2287
LguI	GCTCTTC	1 cut(s)	2590
LmnI	GCTCC	5 cut(s)	745, 817, 868, 1216, 2470
LweI	GCATC	7 cut(s)	896, 1109, 1445, 1508, 1765, 1961, 2022
MaeI	CTAG	8 cut(s)	450, 525, 1116, 1254, 1259, 1826, 2486, 2682
MaeII	ACGT	1 cut(s)	1969
MaeIII	GTNAC	8 cut(s)	95, 704, 1168, 1878, 1928, 2041, 2178, 2308
MhlI	GDGCHC	3 cut(s)	524, 651, 2227
MlsI	TGGCCA	1 cut(s)	1192
MluNI	TGGCCA	1 cut(s)	1192
MlyI	GAGTC	4 cut(s)	27, 420, 1838, 2608
MmeI	TCCRAC	2 cut(s)	1225, 2301
Mox20I	TGGCCA	1 cut(s)	1192
Mph1103I	ATGCAT	2 cut(s)	1398, 1501
MroI	TCCGGA	1 cut(s)	2525
MroNI	GCCGGC	1 cut(s)	1372
MroXI	GAANNNNTTC	2 cut(s)	595, 2272
MscI	TGGCCA	1 cut(s)	1192
MseI	TTAA	3 cut(s)	822, 1593, 2099
MslI	CAYNNNNRTG	1 cut(s)	2244
Msp20I	TGGCCA	1 cut(s)	1192
MspA1I	CMGCKG	2 cut(s)	53, 1442
MspI	CCGG	8 cut(s)	75, 211, 562, 768, 815, 1080, 1373, 2526
MspR9I	CCNGG	4 cut(s)	563, 769, 1080, 1081
Mva1269I	GAATGC	1 cut(s)	1316
MvnI	CGCG	1 cut(s)	316
NaeI	GCCGGC	1 cut(s)	1374
NciI	CCSGG	4 cut(s)	563, 769, 1080, 1081
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	1372
NlaIV	GGNNCC	4 cut(s)	747, 813, 864, 1225
NmuCI	GTSAC	4 cut(s)	704, 1878, 1928, 2178
NsbI	TGCGCA	1 cut(s)	1123
NsiI	ATGCAT	2 cut(s)	1398, 1501
NspI	RCATGY	1 cut(s)	2119
PagI	TCATGA	1 cut(s)	2290
PaqCI	CACCTGC	1 cut(s)	1190
PciSI	GCTCTTC	1 cut(s)	2590
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 440
PctI	GAATGC	1 cut(s)	1316
PdiI	GCCGGC	1 cut(s)	1374
PdmI	GAANNNNTTC	2 cut(s)	595, 2272
PfeI	GAWTC	8 cut(s)	361, 418, 596, 881, 970, 1289, 1325, 1802
PflMI	CCANNNNNTGG	1 cut(s)	226
PleI	GAGTC	4 cut(s)	26, 419, 1837, 2608
PpsI	GAGTC	4 cut(s)	26, 419, 1837, 2608
PshBI	ATTAAT	1 cut(s)	1593
Psp124BI	GAGCTC	2 cut(s)	524, 651
PspN4I	GGNNCC	4 cut(s)	747, 813, 864, 1225
PspPI	GGNCC	4 cut(s)	1400, 1466, 1577, 1685
PstI	CTGCAG	3 cut(s)	369, 1447, 1540
PstNI	CAGNNNCTG	5 cut(s)	56, 364, 373, 890, 1535
PvuII	CAGCTG	2 cut(s)	53, 1442
RsaI	GTAC	6 cut(s)	813, 1583, 1601, 2149, 2490, 2658
RsaNI	GTAC	6 cut(s)	812, 1582, 1600, 2148, 2489, 2657
RseI	CAYNNNNRTG	1 cut(s)	2244
SacI	GAGCTC	2 cut(s)	524, 651
SapI	GCTCTTC	1 cut(s)	2590
SaqAI	TTAA	3 cut(s)	822, 1593, 2099
Sau96I	GGNCC	4 cut(s)	1400, 1466, 1577, 1685
SchI	GAGTC	4 cut(s)	27, 420, 1838, 2608
ScrFI	CCNGG	4 cut(s)	563, 769, 1080, 1081
SduI	GDGCHC	3 cut(s)	524, 651, 2227
SfaNI	GCATC	7 cut(s)	896, 1109, 1445, 1508, 1765, 1961, 2022
SfcI	CTRYAG	4 cut(s)	365, 456, 1443, 1536
SinI	GGWCC	4 cut(s)	1400, 1466, 1577, 1685
SmaI	CCCGGG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	1 cut(s)	2244
SsiI	CCGC	4 cut(s)	79, 905, 1053, 1841
SspMI	CTAG	8 cut(s)	450, 525, 1116, 1254, 1259, 1826, 2486, 2682
SstI	GAGCTC	2 cut(s)	524, 651
StyD4I	CCNGG	4 cut(s)	561, 767, 1078, 1079
StyI	CCWWGG	3 cut(s)	124, 663, 2218
TaaI	ACNGT	6 cut(s)	312, 457, 1531, 1737, 2326, 2493
TaiI	ACGT	1 cut(s)	1972
TaqI	TCGA	3 cut(s)	239, 421, 2378
TatI	WGTACW	1 cut(s)	2488
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	8 cut(s)	361, 418, 596, 881, 970, 1289, 1325, 1802
Tru1I	TTAA	3 cut(s)	822, 1593, 2099
Tru9I	TTAA	3 cut(s)	822, 1593, 2099
TscAI	CASTG	8 cut(s)	930, 1641, 1674, 2007, 2068, 2140, 2331, 2498
TseFI	GTSAC	4 cut(s)	704, 1878, 1928, 2178
Tsp45I	GTSAC	4 cut(s)	704, 1878, 1928, 2178
TspGWI	ACGGA	3 cut(s)	543, 968, 1569
TspMI	CCCGGG	1 cut(s)	1079
TspRI	CASTG	8 cut(s)	930, 1641, 1674, 2007, 2068, 2140, 2331, 2498
Van91I	CCANNNNNTGG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	2223
VpaK11BI	GGWCC	4 cut(s)	1400, 1466, 1577, 1685
VspI	ATTAAT	1 cut(s)	1593
XagI	CCTNNNNNAGG	1 cut(s)	1257
XapI	RAATTY	7 cut(s)	848, 1084, 1412, 1791, 1993, 2380, 2547
XceI	RCATGY	1 cut(s)	2119
XmaI	CCCGGG	1 cut(s)	1079
XmnI	GAANNNNTTC	2 cut(s)	595, 2272
XspI	CTAG	8 cut(s)	450, 525, 1116, 1254, 1259, 1826, 2486, 2682
Zsp2I	ATGCAT	2 cut(s)	1398, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.