Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004402

Physical Location & Seq

Genomic Coordinates Forward (+)

44541069 .. 44543477

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCAAGCCAAGCTCGCAAAGGCGGAGTCTCCCTCCCGGAGCGGCGGAACCCTAAGAAGGACGACGGCGGCGACGGCGTCATCGCCAGGATCTCCCAGTCCCAAATCCTCGCTCGCGGCAAGCAAGTCACCTCCGACGCCGGCTACGTCGCCAAGAAGCTGCTGAGGAGCACCGGCAAGGCCGCCTGGATCTTCGGCACCACCTTCCTCATCCTCGTCGTCCCTCTCATCATCGAGATGGACCGCGAGCAGCAGCTCACCGAGCTCGAGTTCCAGCAGGCCAACATCCTCGGCACCTCCGCCGGCTCCGCTCCTCCGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

108

Amino Acids

11.57

Weight (kDa)

9.89

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	44 - 93	1.3e-07	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47670
fragaria_vesca	FvH4_2g37660 FvH4_2g40670
malus_domestica	MD08G1004200.v1.1 MD08G1040200.v1.1 MD15G1034600.v1.1
prunus_persica	Prupe.1G356100_v2.0.a1 Prupe.1G388700_v2.0.a1
pyrus_communis	pycom08g03240 pycom15g03190
rosa_chinensis	RchiOBHm_Chr6g0299981 RchiOBHm_Chr6g0304071
rosa_laevigata	RLG00000011020 RLG00000011374
rosa_multiflora	Rmu_co8464929.1_g000001 Rmu_sc0001370.1_g000004 Rmu_sc0003805.1_g000011 Rmu_sc0031199.1_g000003
rosa_roxburghii	Rroxscaffold_7G00164130 Rroxscaffold_7G00168220
rosa_rugosa	Rorug06G0293300 Rorug06G0327400
rosa_samantha	Rh6AG404900 Rh6AG441300 Rh6BG413300 Rh6BG461500 Rh6CG419300 Rh6CG453400 Rh6DG406000 Rh6DG440700
rosa_wichuraiana	Rw6G035430 Rw6G038240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 293
AccBSI	CCGCTC	2 cut(s)	43, 311
AccII	CGCG	2 cut(s)	117, 246
AciI	CCGC	9 cut(s)	24, 43, 46, 69, 117, 183, 244, 300, 309
AclWI	GGATC	2 cut(s)	98, 197
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	2 cut(s)	78, 138
AfiI	CCNNNNNNNGG	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	86, 185
AluBI	AGCT	4 cut(s)	14, 160, 256, 265
AluI	AGCT	4 cut(s)	14, 160, 256, 265
Alw21I	GWGCWC	2 cut(s)	173, 267
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	98, 197
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	180, 279, 318
ApeKI	GCWGC	3 cut(s)	160, 250, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	121, 250
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	197, 293
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	173, 267
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	147, 262, 265
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	82, 91
BciT130I	CCWGG	2 cut(s)	88, 187
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	7 cut(s)	44, 70, 118, 161, 183, 251, 254
BlsI	GCNGC	7 cut(s)	45, 71, 119, 162, 184, 252, 255
Bme1390I	CCNGG	3 cut(s)	38, 88, 187
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	50, 199, 295, 307
BmrFI	CCNGG	3 cut(s)	38, 88, 187
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	78, 138
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	3 cut(s)	140, 173, 302
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	88, 187
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	210, 285
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	181, 303
BseXI	GCAGC	3 cut(s)	147, 262, 265
Bsh1236I	CGCG	2 cut(s)	117, 246
BshFI	GGCC	3 cut(s)	182, 281, 320
BshNI	GGYRCC	2 cut(s)	197, 293
BsiHKAI	GWGCWC	2 cut(s)	173, 267
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	5 cut(s)	38, 141, 174, 303, 317
BslFI	GGGAC	2 cut(s)	85, 206
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	85, 206
BsnI	GGCC	3 cut(s)	182, 281, 320
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	173, 267
Bsp143I	GATC	2 cut(s)	90, 189
BspACI	CCGC	9 cut(s)	24, 43, 46, 69, 117, 183, 244, 300, 309
BspANI	GGCC	3 cut(s)	182, 281, 320
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	117, 246
BspLI	GGNNCC	4 cut(s)	50, 199, 295, 307
BspPI	GGATC	2 cut(s)	98, 197
BspT107I	GGYRCC	2 cut(s)	197, 293
BsrBI	CCGCTC	2 cut(s)	43, 311
BsrFI	RCCGGY	3 cut(s)	140, 173, 302
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	3 cut(s)	140, 173, 302
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	90, 189
BssNI	GRCGYC	2 cut(s)	78, 138
Bst2UI	CCWGG	2 cut(s)	88, 187
BstACI	GRCGYC	2 cut(s)	78, 138
BstC8I	GCNNGC	8 cut(s)	7, 16, 115, 122, 142, 248, 279, 304
BstDEI	CTNAG	2 cut(s)	54, 164
BstF5I	GGATG	2 cut(s)	210, 285
BstFNI	CGCG	2 cut(s)	117, 246
BstKTI	GATC	2 cut(s)	93, 192
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	90, 189
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 15, 75, 262, 308, 317
BstNI	CCWGG	2 cut(s)	88, 187
BstSCI	CCNGG	3 cut(s)	36, 86, 185
BstUI	CGCG	2 cut(s)	117, 246
BstV1I	GCAGC	3 cut(s)	147, 262, 265
BstX2I	RGATCY	2 cut(s)	90, 189
BstYI	RGATCY	2 cut(s)	90, 189
BsuRI	GGCC	3 cut(s)	182, 281, 320
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	210, 285
Cac8I	GCNNGC	8 cut(s)	7, 16, 115, 122, 142, 248, 279, 304
Cfr10I	RCCGGY	3 cut(s)	140, 173, 302
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	2 cut(s)	67, 146
DdeI	CTNAG	2 cut(s)	54, 164
DpnI	GATC	2 cut(s)	92, 191
DpnII	GATC	2 cut(s)	90, 189
EaeI	YGGCCR	1 cut(s)	318
EciI	GGCGGA	3 cut(s)	39, 61, 289
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	86, 185
EcoT38I	GRGCYC	1 cut(s)	267
FaqI	GGGAC	2 cut(s)	85, 206
Fnu4HI	GCNGC	7 cut(s)	44, 70, 118, 161, 183, 251, 254
FokI	GGATG	2 cut(s)	197, 272
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	7 cut(s)	44, 70, 118, 161, 183, 251, 254
GluI	GCNGC	7 cut(s)	44, 70, 118, 161, 183, 251, 254
HaeIII	GGCC	3 cut(s)	182, 281, 320
HapII	CCGG	5 cut(s)	38, 141, 174, 303, 317
HgaI	GACGC	2 cut(s)	67, 146
Hin1I	GRCGYC	2 cut(s)	78, 138
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	5 cut(s)	38, 141, 174, 303, 317
HphI	GGTGA	2 cut(s)	121, 250
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	235
Hpy99I	CGWCG	5 cut(s)	68, 77, 140, 152, 221
HpyAV	CCTTC	2 cut(s)	52, 214
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 15, 75, 262, 308, 317
HpyF3I	CTNAG	2 cut(s)	54, 164
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	78, 138
KroI	GCCGGC	2 cut(s)	140, 302
KroNI	GCCGGC	2 cut(s)	142, 304
Kzo9I	GATC	2 cut(s)	90, 189
LmnI	GCTCC	4 cut(s)	40, 168, 311, 316
Lsp1109I	GCAGC	3 cut(s)	147, 262, 265
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	92, 191
MbiI	CCGCTC	2 cut(s)	43, 311
MboI	GATC	2 cut(s)	90, 189
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	2 cut(s)	90, 189
MhlI	GDGCHC	2 cut(s)	173, 267
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	159
MroNI	GCCGGC	2 cut(s)	140, 302
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	5 cut(s)	38, 141, 174, 303, 317
MspR9I	CCNGG	3 cut(s)	38, 88, 187
MvaI	CCWGG	2 cut(s)	88, 187
MvnI	CGCG	2 cut(s)	117, 246
MwoI	GCNNNNNNNGC	6 cut(s)	11, 15, 75, 262, 308, 317
NaeI	GCCGGC	2 cut(s)	142, 304
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	90, 189
NgoMIV	GCCGGC	2 cut(s)	140, 302
NlaIV	GGNNCC	4 cut(s)	50, 199, 295, 307
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 144
PdiI	GCCGGC	2 cut(s)	142, 304
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	7 cut(s)	45, 71, 119, 162, 184, 252, 255
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	86, 185
PspGI	CCWGG	2 cut(s)	86, 185
PspN4I	GGNNCC	4 cut(s)	50, 199, 295, 307
PspPI	GGNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	90, 189
PsyI	GACNNNGTC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	7 cut(s)	44, 70, 118, 161, 183, 251, 254
Sau3AI	GATC	2 cut(s)	90, 189
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	38, 88, 187
SduI	GDGCHC	2 cut(s)	173, 267
SetI	ASST	8 cut(s)	16, 134, 150, 162, 206, 258, 267, 299
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SsiI	CCGC	9 cut(s)	24, 43, 46, 69, 117, 183, 244, 300, 309
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	36, 86, 185
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	234, 267
TauI	GCSGC	4 cut(s)	46, 72, 120, 185
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	160, 250, 253
Tsp45I	GTSAC	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.