Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464929.1

Orthogroup ID

OG0004402

Physical Location & Seq

Genomic Coordinates Reverse (-)

224 .. 1907

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1183 bp

gagttggggaacgctttccttaaccatagcctacttttggcaactatacacattgtggattttagttcagctacatgaagctgttcccggaaagaggtataacagatatgtggagcttgctcaagcagcctttggggaaagattgggtgtttggcttgctctgttcccaactgtttacctatcagcaggaactgcaacagctttgattctcataggaggagagaccatgaaactatttttccagattgtttgcgggcctctctgttcatcaaatcccctaacaacagtggagtggtacctagtattcacttccttgtgtatcgttctgtctcagcttccaaacctcaattcaatagccggactttcattagtaggagctgtcacagccatcacttacgccacaatggtttgggtcctctctgtaagccaaccaaggccacccacaatttcttatgaaccgcttccattgccatctttctctgcttccctctttgcagccttgaacgcacttggtattatagcctttgcattcagaggccacaatttagttctagagattcaggcaacaatgccatcaacctttaagcacccagctcatgtacccatgtggaaaggtgcaaaggttgcctatttcttcattgccatgtgtgtgttccctgttgcgattggaggcttctgggcttatggaaaccttatgccttctggagggatactgaatgcattatacgcgttccacagtcatgacatccccagagggctacttgcaatgagtttcctactagttgtgttcaattgtttgagcagttttcagatatactctatgcccgtattcgacagttttgaagctggttacactagtcgtaccaaccgcccctgttcaatctgggtacggtctggttttcgagttttctatggcttcatctccttcttcataggtgtggcactccccttcttgtctagtcttgctggactattgggaggactgacccttccagtcacattcgcttacccttgcttcatgtgggttctcataaaaaagcccacaaagtacagctttaattggtatttcaattggatcttgggctggttggggattgcctttagtttggcgttttcaattggaggcatctggagtatggtcaacagtggacttaaattgaagttcttcaagccgcctagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

393

Amino Acids

43.49

Weight (kDa)

9.35

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47670
fragaria_vesca	FvH4_2g37660 FvH4_2g40670
malus_domestica	MD08G1004200.v1.1 MD08G1040200.v1.1 MD15G1034600.v1.1
prunus_persica	Prupe.1G356100_v2.0.a1 Prupe.1G388700_v2.0.a1
pyrus_communis	pycom08g03240 pycom15g03190
rosa_chinensis	RchiOBHm_Chr6g0299981 RchiOBHm_Chr6g0304071
rosa_laevigata	RLG00000011020 RLG00000011374
rosa_multiflora	Rmu_co8464929.1_g000001 Rmu_sc0001370.1_g000004 Rmu_sc0003805.1_g000011 Rmu_sc0031199.1_g000003
rosa_roxburghii	Rroxscaffold_7G00164130 Rroxscaffold_7G00168220
rosa_rugosa	Rorug06G0293300 Rorug06G0327400
rosa_samantha	Rh6AG404900 Rh6AG441300 Rh6BG413300 Rh6BG461500 Rh6CG419300 Rh6CG453400 Rh6DG406000 Rh6DG440700
rosa_wichuraiana	Rw6G035430 Rw6G038240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	253, 459, 869, 1173
AclWI	GGATC	1 cut(s)	1083
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	5 cut(s)	297, 601, 863, 889, 1050
AfiI	CCNNNNNNNGG	3 cut(s)	37, 94, 705
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	9 cut(s)	352, 503, 791, 843, 880, 1070, 1117, 1160, 1169
AhlI	ACTAGT	2 cut(s)	779, 855
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
Alw26I	GTCTC	2 cut(s)	216, 334
AlwI	GGATC	1 cut(s)	1083
AlwNI	CAGNNNCTG	1 cut(s)	192
AoxI	GGCC	3 cut(s)	255, 435, 536
ApeKI	GCWGC	2 cut(s)	126, 495
Asp700I	GAANNNNTTC	4 cut(s)	14, 82, 460, 1164
Asp718I	GGTACC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	255, 413
AsuC2I	CCSGG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	138, 507
BccI	CCATC	3 cut(s)	396, 479, 581
BciVI	GTATCC	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	216, 334
BcuI	ACTAGT	2 cut(s)	779, 855
BfaI	CTAG	6 cut(s)	300, 552, 780, 856, 958, 1177
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	3 cut(s)	127, 496, 1173
BlsI	GCNGC	3 cut(s)	128, 497, 1174
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	255, 413
BmiI	GGNNCC	2 cut(s)	297, 414
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	1135
BpmI	CTGGAG	2 cut(s)	724, 1151
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 94, 705
Bse1I	ACTGG	1 cut(s)	993
Bse3DI	GCAATG	3 cut(s)	465, 637, 772
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	3 cut(s)	37, 94, 705
BseMI	GCAATG	3 cut(s)	465, 637, 772
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	993
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	138, 507
BseYI	CCCAGC	1 cut(s)	590
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	257, 437, 538
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	88, 358
BslI	CCNNNNNNNGG	3 cut(s)	37, 94, 705
BsmAI	GTCTC	2 cut(s)	216, 334
BsmI	GAATGC	2 cut(s)	528, 722
BsnI	GGCC	3 cut(s)	257, 437, 538
Bso31I	GGTCTC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	1075
BspACI	CCGC	4 cut(s)	253, 459, 869, 1173
BspANI	GGCC	3 cut(s)	257, 437, 538
BspCNI	CTCAG	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	740
BspLI	GGNNCC	2 cut(s)	297, 414
BspPI	GGATC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	216
BsrDI	GCAATG	3 cut(s)	465, 637, 772
BsrI	ACTGG	1 cut(s)	993
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	1075
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	6 cut(s)	173, 287, 738, 837, 892, 1146
BstAPI	GCANNNNNTGC	2 cut(s)	192, 624
BstC8I	GCNNGC	3 cut(s)	118, 157, 255
BstDEI	CTNAG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	703
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	1 cut(s)	1078
BstMAI	GTCTC	2 cut(s)	216, 334
BstMBI	GATC	1 cut(s)	1075
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 192, 384, 467, 504, 624, 726
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	138, 507
BstX2I	RGATCY	1 cut(s)	1075
BstYI	RGATCY	1 cut(s)	1075
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	257, 437, 538
BtsCI	GGATG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	292, 1151
Cac8I	GCNNGC	3 cut(s)	118, 157, 255
CaiI	CAGNNNCTG	1 cut(s)	192
CciI	TCATGA	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	255, 413
Csp6I	GTAC	5 cut(s)	296, 600, 862, 888, 1049
CviAII	CATG	7 cut(s)	75, 227, 597, 605, 644, 741, 1019
CviQI	GTAC	5 cut(s)	296, 600, 862, 888, 1049
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	1077
DpnII	GATC	1 cut(s)	1075
DraIII	CACNNNGTG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	703
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	7 cut(s)	78, 230, 600, 608, 647, 744, 1022
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FatI	CATG	7 cut(s)	74, 226, 596, 604, 643, 740, 1018
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	127, 496, 1173
FokI	GGATG	1 cut(s)	732
Fsp4HI	GCNGC	3 cut(s)	127, 496, 1173
FspBI	CTAG	6 cut(s)	300, 552, 780, 856, 958, 1177
GluI	GCNGC	3 cut(s)	127, 496, 1173
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	2 cut(s)	724, 1151
HaeIII	GGCC	3 cut(s)	257, 437, 538
HapII	CCGG	2 cut(s)	88, 358
Hin1II	CATG	7 cut(s)	78, 230, 600, 608, 647, 744, 1022
HincII	GTYRAC	1 cut(s)	1142
HindII	GTYRAC	1 cut(s)	1142
HinfI	GANTC	2 cut(s)	206, 557
HpaII	CCGG	2 cut(s)	88, 358
Hpy166II	GTNNAC	3 cut(s)	176, 1142, 1149
Hpy188I	TCNGA	2 cut(s)	534, 811
Hpy188III	TCNNGA	5 cut(s)	242, 552, 703, 741, 1130
Hpy8I	GTNNAC	3 cut(s)	176, 1142, 1149
HpyAV	CCTTC	4 cut(s)	709, 935, 959, 999
HpyCH4III	ACNGT	6 cut(s)	173, 287, 738, 837, 892, 1146
HpyCH4V	TGCA	6 cut(s)	195, 495, 528, 618, 720, 765
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 192, 384, 467, 504, 624, 726
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	7 cut(s)	78, 230, 600, 608, 647, 744, 1022
KpnI	GGTACC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	1075
LmnI	GCTCC	2 cut(s)	113, 375
Lsp1109I	GCAGC	2 cut(s)	138, 507
LweI	GCATC	1 cut(s)	1135
MaeI	CTAG	6 cut(s)	300, 552, 780, 856, 958, 1177
MaeIII	GTNAC	3 cut(s)	380, 849, 995
MalI	GATC	1 cut(s)	1077
MboI	GATC	1 cut(s)	1075
MboII	GAAGA	3 cut(s)	626, 920, 1157
MfeI	CAATTG	3 cut(s)	791, 1070, 1117
MflI	RGATCY	1 cut(s)	1075
MluCI	AATT	8 cut(s)	347, 445, 542, 791, 1058, 1070, 1117, 1155
MluI	ACGCGT	1 cut(s)	727
Mph1103I	ATGCAT	1 cut(s)	722
MroXI	GAANNNNTTC	4 cut(s)	14, 82, 460, 1164
MseI	TTAA	4 cut(s)	21, 583, 1057, 1153
MslI	CAYNNNNRTG	4 cut(s)	642, 648, 739, 936
MspI	CCGG	2 cut(s)	88, 358
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	3 cut(s)	791, 1070, 1117
Mva1269I	GAATGC	2 cut(s)	528, 722
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	7 cut(s)	126, 192, 384, 467, 504, 624, 726
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	1075
NlaIII	CATG	7 cut(s)	78, 230, 600, 608, 647, 744, 1022
NlaIV	GGNNCC	2 cut(s)	297, 414
NmuCI	GTSAC	2 cut(s)	380, 995
NsiI	ATGCAT	1 cut(s)	722
PagI	TCATGA	1 cut(s)	740
PctI	GAATGC	2 cut(s)	528, 722
PdmI	GAANNNNTTC	4 cut(s)	14, 82, 460, 1164
PfeI	GAWTC	2 cut(s)	206, 557
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	128, 497, 1174
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	297, 414
PspPI	GGNCC	2 cut(s)	255, 413
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	1075
RsaI	GTAC	5 cut(s)	297, 601, 863, 889, 1050
RsaNI	GTAC	5 cut(s)	296, 600, 862, 888, 1049
RseI	CAYNNNNRTG	4 cut(s)	642, 648, 739, 936
SaqAI	TTAA	4 cut(s)	21, 583, 1057, 1153
SatI	GCNGC	3 cut(s)	127, 496, 1173
Sau3AI	GATC	1 cut(s)	1075
Sau96I	GGNCC	2 cut(s)	255, 413
ScrFI	CCNGG	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	1135
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	4 cut(s)	642, 648, 739, 936
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SpeI	ACTAGT	2 cut(s)	779, 855
Sse9I	AATT	8 cut(s)	347, 445, 542, 791, 1058, 1070, 1117, 1155
SsiI	CCGC	4 cut(s)	253, 459, 869, 1173
SspMI	CTAG	6 cut(s)	300, 552, 780, 856, 958, 1177
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	6 cut(s)	173, 287, 738, 837, 892, 1146
TaqI	TCGA	2 cut(s)	832, 902
TasI	AATT	8 cut(s)	347, 445, 542, 791, 1058, 1070, 1117, 1155
TatI	WGTACW	1 cut(s)	1048
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	2 cut(s)	206, 557
Tru1I	TTAA	4 cut(s)	21, 583, 1057, 1153
Tru9I	TTAA	4 cut(s)	21, 583, 1057, 1153
TscAI	CASTG	2 cut(s)	292, 1151
TseFI	GTSAC	2 cut(s)	380, 995
TseI	GCWGC	2 cut(s)	126, 495
Tsp45I	GTSAC	2 cut(s)	380, 995
TspDTI	ATGAA	9 cut(s)	91, 243, 256, 355, 469, 626, 908, 920, 1007
TspRI	CASTG	2 cut(s)	292, 1151
VpaK11BI	GGWCC	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	551
XmnI	GAANNNNTTC	4 cut(s)	14, 82, 460, 1164
XspI	CTAG	6 cut(s)	300, 552, 780, 856, 958, 1177
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.