Rh6AG441300

Lysine histidine transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004402
Physical Location & Seq
Reverse (-)
62876938 .. 62878796
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG441300.1

Sequence Viewer

Length: 1059 bp
ATGACGGCAAGGAGGGCAGCAGATTCAGAAATCGAAGCTGCGGCAGCCGATATGTCAAGCCCAGCTGGTCAGCAAAAAACGCCTAAGAGCCCTTTTGCTTCGCGTTTTATGAGTACTCCTCTTGCCAGCCCCATGAAAAAGGCCATTGTAAGCATGCAAGGCTACTTGGAAGAAGTTGGACACTTTACCAAGCTCGATCCTCAAGACTCCTGGCTACCCATCACCGAGTCGAGAAATGGTAATGCCTACTACTCGGCGTTTCACACGCTCAGTTCCGGAATCGGAGTTCAAGCCCTCCTCCTTCCGCTGTCTTTCACTGTTCTCGGTTGGGCATGGGGAATCATATGCCTCTTAGTGGCTTTCATGTGGCAGTTGTATACTCTGTGGTTACTGATACAGCTCCATGAATCGCAATCTGGGATGCGCTACAGTCGATACCTCCGCCTTTCCATGGCCGCTTTTGGTGAGAAACTAGGGAAGTTGCTGGCGCTGTTTCCAATCATGTACCTCTCCGGTGGCACGTGTGTGACCCTGATCATGATTGGTGGTGGAACCATGAAGATTTTTTACCAAATCGTTAGCGGTAATAATACAAGTTCTTTGACCATCCTGGAGTGGTACTTGGTGTTCACCGGCATGGCCATTGTTCTTGCTCAGCTTCCTAACCTCAACTCCATTGCCGGGGTTTCGCTAATCGGAGCAATCACTGCTATAACTTACTGCACTCTCATTTGGATTGTTTCCATTACCATAGATAGGCCAGCGGGTGTTAACTATGACTATCCAGTTCTTCCTCCCCAAGCAAAATCTGATCCAGCTGCTTCGGTTTTTAGTATTCTCAATGCGCTTGGGATCACTGTCTTTGCATTTAGAGGCCACAATCTTGTGCTCGAAATACAGGGGACTATGCCTTCAAGCACAAAGAGCCCGTCGTGTTTGCCAATGTGGAAAGGGGTGAAGTTTGCGTATCTCATCATCGCAATGTGCTTATTTCCCCTTGCAATTGGCGGCTACTGGGCATATGGAAATTTGGTAAGAACTGTAAGATACATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

352

Amino Acids

38.46

Weight (kDa)

9.11

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 79 - 347 7.2e-38 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AccII CGCG 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 7 cut(s) 41, 305, 442, 456, 582, 764, 1008
AclWI GGATC 3 cut(s) 191, 806, 860
AcoI YGGCCR 2 cut(s) 453, 639
AcsI RAATTY 1 cut(s) 1027
AcvI CACGTG 1 cut(s) 522
AfaI GTAC 3 cut(s) 115, 506, 620
AfiI CCNNNNNNNGG 4 cut(s) 355, 451, 681, 756
AflIII ACRYGT 1 cut(s) 521
AgsI TTSAA 2 cut(s) 290, 915
AjnI CCWGG 2 cut(s) 209, 609
AleI CACNNNNGTG 1 cut(s) 524
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 6 cut(s) 38, 65, 193, 400, 658, 818
AluI AGCT 6 cut(s) 38, 65, 193, 400, 658, 818
Alw21I GWGCWC 1 cut(s) 891
AlwI GGATC 3 cut(s) 191, 806, 860
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 5 cut(s) 141, 453, 639, 758, 874
ApeKI GCWGC 4 cut(s) 17, 38, 44, 818
ApoI RAATTY 1 cut(s) 1027
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AspLEI GCGC 3 cut(s) 426, 490, 847
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 4 cut(s) 214, 476, 622, 967
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 2 cut(s) 92, 929
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
BbrPI CACGTG 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 891
BbvI GCAGC 4 cut(s) 25, 29, 56, 805
BccI CCATC 2 cut(s) 227, 614
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 211, 611
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 1 cut(s) 682
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 1 cut(s) 491
BisI GCNGC 7 cut(s) 18, 39, 42, 45, 456, 819, 1009
BlpI GCTNAGC 1 cut(s) 654
BlsI GCNGC 7 cut(s) 19, 40, 43, 46, 457, 820, 1010
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 211, 611, 682
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 3 cut(s) 211, 611, 682
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 1024
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 450, 681
BsaWI WCCGGW 2 cut(s) 275, 512
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 451, 681, 756
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 785, 1019
Bse3DI GCAATG 2 cut(s) 675, 987
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 2 cut(s) 211, 611
BseDI CCNNGG 2 cut(s) 450, 681
BseGI GGATG 2 cut(s) 426, 606
BseLI CCNNNNNNNGG 4 cut(s) 355, 451, 681, 756
BseMI GCAATG 2 cut(s) 675, 987
BseMII CTCAG 2 cut(s) 283, 668
BseNI ACTGG 2 cut(s) 785, 1019
BseRI GAGGAG 2 cut(s) 108, 287
BseXI GCAGC 4 cut(s) 25, 29, 56, 805
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 706
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 143, 455, 641, 760, 876
BsiHKAI GWGCWC 1 cut(s) 891
BsiSI CCGG 4 cut(s) 276, 513, 633, 681
BslFI GGGAC 1 cut(s) 916
BslI CCNNNNNNNGG 4 cut(s) 355, 451, 681, 756
BsmFI GGGAC 1 cut(s) 916
BsnI GGCC 5 cut(s) 143, 455, 641, 760, 876
Bsp1286I GDGCHC 3 cut(s) 92, 891, 929
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 4 cut(s) 196, 534, 811, 852
Bsp1720I GCTNAGC 1 cut(s) 654
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 7 cut(s) 41, 305, 442, 456, 582, 764, 1008
BspANI GGCC 5 cut(s) 143, 455, 641, 760, 876
BspCNI CTCAG 2 cut(s) 282, 667
BspEI TCCGGA 1 cut(s) 275
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 553
BspPI GGATC 3 cut(s) 191, 806, 860
BsrDI GCAATG 2 cut(s) 675, 987
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 2 cut(s) 785, 1019
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 450, 681
BssMI GATC 4 cut(s) 196, 534, 811, 852
BssNAI GTATAC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 211, 611
Bst4CI ACNGT 4 cut(s) 319, 431, 859, 1042
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 4 cut(s) 127, 155, 486, 762
BstDEI CTNAG 4 cut(s) 84, 269, 352, 654
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 426, 606
BstFNI CGCG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 3 cut(s) 426, 490, 847
BstKTI GATC 4 cut(s) 199, 537, 814, 855
BstMBI GATC 4 cut(s) 196, 534, 811, 852
BstMWI GCNNNNNNNGC 6 cut(s) 14, 44, 79, 159, 707, 924
BstNI CCWGG 2 cut(s) 211, 611
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 209, 609, 680
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 4 cut(s) 25, 29, 56, 805
BstZ17I GTATAC 1 cut(s) 378
BsuRI GGCC 5 cut(s) 143, 455, 641, 760, 876
BtgI CCRYGG 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 961
BtsCI GGATG 2 cut(s) 426, 606
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 3 cut(s) 315, 705, 855
Cac8I GCNNGC 4 cut(s) 127, 155, 486, 762
CciI TCATGA 1 cut(s) 537
CfoI GCGC 3 cut(s) 426, 490, 847
Cfr10I RCCGGY 1 cut(s) 632
Csp6I GTAC 3 cut(s) 114, 505, 619
CviQI GTAC 3 cut(s) 114, 505, 619
DdeI CTNAG 4 cut(s) 84, 269, 352, 654
DpnI GATC 4 cut(s) 198, 536, 813, 854
DpnII GATC 4 cut(s) 196, 534, 811, 852
EaeI YGGCCR 2 cut(s) 453, 639
EciI GGCGGA 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 92, 929
Eco72I CACGTG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 209, 609
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 92, 929
ErhI CCWWGG 1 cut(s) 450
FaqI GGGAC 1 cut(s) 916
FauI CCCGC 1 cut(s) 757
FauNDI CATATG 2 cut(s) 344, 1021
FbaI TGATCA 1 cut(s) 534
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 7 cut(s) 18, 39, 42, 45, 456, 819, 1009
FokI GGATG 2 cut(s) 433, 593
FriOI GRGCYC 2 cut(s) 92, 929
Fsp4HI GCNGC 7 cut(s) 18, 39, 42, 45, 456, 819, 1009
FspBI CTAG 1 cut(s) 473
GlaI GCGC 3 cut(s) 425, 489, 846
GluI GCNGC 7 cut(s) 18, 39, 42, 45, 456, 819, 1009
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 5 cut(s) 143, 455, 641, 760, 876
HapII CCGG 4 cut(s) 276, 513, 633, 681
HhaI GCGC 3 cut(s) 426, 490, 847
Hin6I GCGC 3 cut(s) 424, 488, 845
HinP1I GCGC 3 cut(s) 424, 488, 845
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 6 cut(s) 23, 206, 227, 279, 339, 407
HpaI GTTAAC 1 cut(s) 772
HpaII CCGG 4 cut(s) 276, 513, 633, 681
HphI GGTGA 4 cut(s) 214, 476, 622, 967
Hpy166II GTNNAC 3 cut(s) 378, 630, 772
Hpy188I TCNGA 4 cut(s) 28, 284, 698, 811
Hpy188III TCNNGA 4 cut(s) 203, 231, 276, 538
Hpy8I GTNNAC 3 cut(s) 378, 630, 772
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 2 cut(s) 311, 921
HpyCH4III ACNGT 4 cut(s) 319, 431, 859, 1042
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 157, 723, 866, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 44, 79, 159, 707, 924
HpyF3I CTNAG 4 cut(s) 84, 269, 352, 654
HpySE526I ACGT 1 cut(s) 521
HspAI GCGC 3 cut(s) 424, 488, 845
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 534
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 4 cut(s) 196, 534, 811, 852
LmnI GCTCC 2 cut(s) 405, 698
Lsp1109I GCAGC 4 cut(s) 25, 29, 56, 805
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 387, 526
MalI GATC 4 cut(s) 198, 536, 813, 854
MboI GATC 4 cut(s) 196, 534, 811, 852
MboII GAAGA 3 cut(s) 182, 571, 782
MfeI CAATTG 1 cut(s) 1002
MhlI GDGCHC 3 cut(s) 92, 891, 929
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 2 cut(s) 1002, 1027
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 2 cut(s) 200, 236
MmeI TCCRAC 1 cut(s) 157
Mox20I TGGCCA 1 cut(s) 641
MroI TCCGGA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 641
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 3 cut(s) 524, 635, 980
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 4 cut(s) 65, 307, 764, 818
MspI CCGG 4 cut(s) 276, 513, 633, 681
MspR9I CCNGG 3 cut(s) 211, 611, 682
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 2 cut(s) 211, 611
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 6 cut(s) 14, 44, 79, 159, 707, 924
NciI CCSGG 1 cut(s) 682
NcoI CCATGG 1 cut(s) 450
NdeI CATATG 2 cut(s) 344, 1021
NdeII GATC 4 cut(s) 196, 534, 811, 852
NlaIV GGNNCC 1 cut(s) 553
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 524
PaeI GCATGC 1 cut(s) 157
PagI TCATGA 1 cut(s) 537
PfeI GAWTC 4 cut(s) 23, 279, 339, 407
PfoI TCCNGGA 1 cut(s) 609
PkrI GCNGC 7 cut(s) 19, 40, 43, 46, 457, 820, 1010
PleI GAGTC 2 cut(s) 200, 235
PmaCI CACGTG 1 cut(s) 522
PmlI CACGTG 1 cut(s) 522
PpsI GAGTC 2 cut(s) 200, 235
Ppu21I YACGTR 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 209, 609
PspCI CACGTG 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 209, 609
PspN4I GGNNCC 1 cut(s) 553
PsrI GAACNNNNNNTAC 2 cut(s) 611, 643
PvuII CAGCTG 2 cut(s) 65, 818
RsaI GTAC 3 cut(s) 115, 506, 620
RsaNI GTAC 3 cut(s) 114, 505, 619
RseI CAYNNNNRTG 3 cut(s) 524, 635, 980
SaqAI TTAA 1 cut(s) 771
SatI GCNGC 7 cut(s) 18, 39, 42, 45, 456, 819, 1009
Sau3AI GATC 4 cut(s) 196, 534, 811, 852
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 2 cut(s) 200, 236
ScrFI CCNGG 3 cut(s) 211, 611, 682
SduI GDGCHC 3 cut(s) 92, 891, 929
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 3 cut(s) 524, 635, 980
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SphI GCATGC 1 cut(s) 157
Sse9I AATT 2 cut(s) 1002, 1027
SsiI CCGC 7 cut(s) 41, 305, 442, 456, 582, 764, 1008
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 3 cut(s) 209, 609, 680
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 4 cut(s) 319, 431, 859, 1042
TaiI ACGT 1 cut(s) 524
TaqI TCGA 5 cut(s) 33, 195, 230, 433, 891
TasI AATT 2 cut(s) 1002, 1027
TatI WGTACW 1 cut(s) 113
TauI GCSGC 3 cut(s) 44, 458, 1011
TfiI GAWTC 4 cut(s) 23, 279, 339, 407
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 3 cut(s) 322, 712, 862
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 4 cut(s) 17, 38, 44, 818
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 4 cut(s) 149, 352, 420, 572
TspRI CASTG 3 cut(s) 322, 712, 862
XapI RAATTY 1 cut(s) 1027
XceI RCATGY 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.