RLG00000012201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025266
Physical Location & Seq
Forward (+)
16222630 .. 16223123
494 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012201

Sequence Viewer

Length: 417 bp
ATGGACGGGGTGAGCAGATCATTACAGGCTGAAACCCATGCCCAATTCTGGATGGGTTCGATGGAGGAGGCAGAGCGGCTGCTTGCTTCTCTCTATTCGTTCCGGATCGTCATGCTCCTGTCTACTCCATCTTCTGGCCTGGTGGCTCCATCTCATCTTCGTACTATAGGTAGGGGTGGAAAGACACATGCTTTTACAAGAACTCGGCTTGGATGGAATTCCATGACAAGAAAGGCTCCGATGGTGGTACCTCTGATGTTAGCGTCGTCGTCTTGGGGTTTTACGGCAATCCAACTAGGCTTGATGTTGAATGGGCCTATTGGGCCTCTATCTGGGCTTGGAGCCTGTCGGCTTCACTTAATCGGTGACTTGTTGACAACAATGTTGCAGAAGCAATCACAGCCGGCAGTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.91

Weight (kDa)

10.81

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025266)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012201 RLG00000013070 RLG00000013074

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 2 cut(s) 163, 249
AfiI CCNNNNNNNGG 3 cut(s) 48, 134, 332
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 138
AlwI GGATC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 3 cut(s) 136, 314, 323
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 217
Asp718I GGTACC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 314, 323
AsuHPI GGTGA 2 cut(s) 22, 377
BanI GGYRCC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 66
BccI CCATC 6 cut(s) 46, 55, 136, 157, 207, 235
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 322
BisI GCNGC 2 cut(s) 77, 80
BlsI GCNGC 2 cut(s) 78, 81
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 314, 323
BmiI GGNNCC 4 cut(s) 147, 237, 249, 343
BmrFI CCNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 134, 332
Bse118I RCCGGY 1 cut(s) 403
BseAI TCCGGA 1 cut(s) 102
BseBI CCWGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 57, 218
BseLI CCNNNNNNNGG 3 cut(s) 48, 134, 332
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 3 cut(s) 138, 316, 325
BshNI GGYRCC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 103, 404
BslI CCNNNNNNNGG 3 cut(s) 48, 134, 332
BsnI GGCC 3 cut(s) 138, 316, 325
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 17, 105
BspACI CCGC 1 cut(s) 76
BspANI GGCC 3 cut(s) 138, 316, 325
BspEI TCCGGA 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 147, 237, 249, 343
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 403
BssMI GATC 2 cut(s) 17, 105
Bst2UI CCWGG 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 84, 405
BstF5I GGATG 2 cut(s) 57, 218
BstKTI GATC 2 cut(s) 20, 108
BstMBI GATC 2 cut(s) 17, 105
BstMWI GCNNNNNNNGC 2 cut(s) 322, 400
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 3 cut(s) 138, 316, 325
BtsCI GGATG 2 cut(s) 57, 218
Cac8I GCNNGC 2 cut(s) 84, 405
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 314, 323
CseI GACGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 162, 248
CviAII CATG 4 cut(s) 38, 112, 188, 223
CviQI GTAC 2 cut(s) 162, 248
DpnI GATC 2 cut(s) 19, 107
DpnII GATC 2 cut(s) 17, 105
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 41, 115, 191, 226
FaiI YATR 5 cut(s) 39, 113, 167, 189, 224
FatI CATG 4 cut(s) 37, 111, 187, 222
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 77, 80
FokI GGATG 2 cut(s) 64, 225
Fsp4HI GCNGC 2 cut(s) 77, 80
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 77, 80
HaeIII GGCC 3 cut(s) 138, 316, 325
HapII CCGG 2 cut(s) 103, 404
HgaI GACGC 1 cut(s) 252
Hin1II CATG 4 cut(s) 41, 115, 191, 226
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HpaII CCGG 2 cut(s) 103, 404
HphI GGTGA 2 cut(s) 22, 377
Hpy166II GTNNAC 2 cut(s) 123, 375
Hpy188I TCNGA 2 cut(s) 240, 255
Hpy188III TCNNGA 2 cut(s) 49, 103
Hpy8I GTNNAC 2 cut(s) 123, 375
Hpy99I CGWCG 2 cut(s) 268, 271
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 400
Hsp92II CATG 4 cut(s) 41, 115, 191, 226
Kpn2I TCCGGA 1 cut(s) 102
KpnI GGTACC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 17, 105
LmnI GCTCC 4 cut(s) 120, 151, 241, 341
LpnPI CCDG 9 cut(s) 11, 34, 116, 120, 125, 131, 152, 318, 358
Lsp1109I GCAGC 1 cut(s) 66
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 365
MalI GATC 2 cut(s) 19, 107
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 17, 105
MboII GAAGA 2 cut(s) 123, 149
MluCI AATT 2 cut(s) 44, 217
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 4 cut(s) 58, 61, 261, 336
MroI TCCGGA 1 cut(s) 102
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 1 cut(s) 359
MspI CCGG 2 cut(s) 103, 404
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 322, 400
NaeI GCCGGC 1 cut(s) 405
NdeII GATC 2 cut(s) 17, 105
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 4 cut(s) 41, 115, 191, 226
NlaIV GGNNCC 4 cut(s) 147, 237, 249, 343
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 78, 81
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 4 cut(s) 147, 237, 249, 343
PspPI GGNCC 2 cut(s) 314, 323
RsaI GTAC 2 cut(s) 163, 249
RsaNI GTAC 2 cut(s) 162, 248
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 77, 80
Sau3AI GATC 2 cut(s) 17, 105
Sau96I GGNCC 2 cut(s) 314, 323
ScrFI CCNGG 1 cut(s) 140
SetI ASST 2 cut(s) 172, 253
SfcI CTRYAG 1 cut(s) 165
SfiI GGCCNNNNNGGCC 1 cut(s) 322
Sse9I AATT 2 cut(s) 44, 217
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 44, 217
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.