RLG00000013074

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025266
Physical Location & Seq
Forward (+)
25820755 .. 25821334
580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013074

Sequence Viewer

Length: 414 bp
ATGCCTAGTCCTACCAAAGGGTCGAAGGGCGGCGCTACATGCTTGCCGGAGTCGTTAGACAGGTCCTCTTGGCCAGAGTTGCAAGAATTGTTGGTGGTTTGGATGGCCTGGGTGCCCAGATCATTATGGGCTGAAACTCATGGCCAATTCTGGATGGGTTCGATGGAGGAGGCGGCGCGGCTACTTGCTTCTCTCTCATTCGATCTAGATCGTCGTGCTCCTGTCTACTCCATGTTCTGGCCCAGTGGCTCCATCTCATCTCCATACGACAAGCGGGGGTGGAAAGACACCTACTTTTACAAGAACTCGGCTTGGATGGAGTTCCATGACAAGAAGGGCTTTGATGGTGGTACCTCTGACGTTAGCGCCGTCGTCTTGGGGTTTTCCGGCAATCCAACTAGGCTTTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

6.09

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0025266)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012201 RLG00000013070 RLG00000013074

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 112, 350
AccB7I CCANNNNNTGG 1 cut(s) 237
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 178
AciI CCGC 4 cut(s) 30, 173, 178, 274
AcoI YGGCCR 2 cut(s) 71, 142
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 17, 237
AjnI CCWGG 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 220
AoxI GGCC 4 cut(s) 71, 105, 142, 239
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 3 cut(s) 35, 178, 368
AspS9I GGNCC 2 cut(s) 63, 240
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 117
BalI TGGCCA 2 cut(s) 73, 144
BanI GGYRCC 2 cut(s) 112, 350
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 6 cut(s) 97, 148, 157, 260, 310, 338
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 109
BfaI CTAG 3 cut(s) 6, 206, 399
BfoI RGCGCY 2 cut(s) 36, 369
BisI GCNGC 3 cut(s) 31, 174, 179
BlsI GCNGC 3 cut(s) 32, 175, 180
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 63, 240
BmiI GGNNCC 3 cut(s) 114, 250, 352
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 237
Bse1I ACTGG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 108, 159, 321
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 17, 237
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 4 cut(s) 73, 107, 144, 241
BshNI GGYRCC 2 cut(s) 112, 350
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 47, 387
BslI CCNNNNNNNGG 2 cut(s) 17, 237
BsnI GGCC 4 cut(s) 73, 107, 144, 241
Bsp1286I GDGCHC 2 cut(s) 117, 220
Bsp143I GATC 3 cut(s) 119, 202, 208
BspACI CCGC 4 cut(s) 30, 173, 178, 274
BspANI GGCC 4 cut(s) 73, 107, 144, 241
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 114, 250, 352
BspT107I GGYRCC 2 cut(s) 112, 350
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 119, 202, 208
Bst2UI CCWGG 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 108, 159, 321
BstFNI CGCG 1 cut(s) 178
BstH2I RGCGCY 2 cut(s) 36, 369
BstHHI GCGC 3 cut(s) 35, 178, 368
BstKTI GATC 3 cut(s) 122, 205, 211
BstMBI GATC 3 cut(s) 119, 202, 208
BstMWI GCNNNNNNNGC 2 cut(s) 39, 79
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 178
BsuRI GGCC 4 cut(s) 73, 107, 144, 241
BtsCI GGATG 3 cut(s) 108, 159, 321
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 3 cut(s) 35, 178, 368
Cfr13I GGNCC 2 cut(s) 63, 240
Csp6I GTAC 1 cut(s) 351
CviAII CATG 4 cut(s) 39, 140, 232, 326
CviQI GTAC 1 cut(s) 351
DpnI GATC 3 cut(s) 121, 204, 210
DpnII GATC 3 cut(s) 119, 202, 208
EaeI YGGCCR 2 cut(s) 71, 142
Eco47I GGWCC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 4 cut(s) 42, 143, 235, 329
FaiI YATR 6 cut(s) 40, 127, 141, 233, 265, 327
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 4 cut(s) 38, 139, 231, 325
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 31, 174, 179
FokI GGATG 3 cut(s) 115, 166, 328
Fsp4HI GCNGC 3 cut(s) 31, 174, 179
FspBI CTAG 3 cut(s) 6, 206, 399
GlaI GCGC 3 cut(s) 34, 177, 367
GluI GCNGC 3 cut(s) 31, 174, 179
HaeII RGCGCY 2 cut(s) 36, 369
HaeIII GGCC 4 cut(s) 73, 107, 144, 241
HapII CCGG 2 cut(s) 47, 387
HhaI GCGC 3 cut(s) 35, 178, 368
Hin1II CATG 4 cut(s) 42, 143, 235, 329
Hin6I GCGC 3 cut(s) 33, 176, 366
HinP1I GCGC 3 cut(s) 33, 176, 366
HinfI GANTC 1 cut(s) 50
HpaII CCGG 2 cut(s) 47, 387
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 151, 206
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 2 cut(s) 216, 374
HpyAV CCTTC 2 cut(s) 19, 328
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 79
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 4 cut(s) 42, 143, 235, 329
HspAI GCGC 3 cut(s) 33, 176, 366
KpnI GGTACC 1 cut(s) 354
Kzo9I GATC 3 cut(s) 119, 202, 208
LmnI GCTCC 2 cut(s) 223, 254
MaeI CTAG 3 cut(s) 6, 206, 399
MaeII ACGT 1 cut(s) 360
MalI GATC 3 cut(s) 121, 204, 210
MboI GATC 3 cut(s) 119, 202, 208
MhlI GDGCHC 2 cut(s) 117, 220
MlsI TGGCCA 2 cut(s) 73, 144
MluCI AATT 2 cut(s) 86, 146
MluNI TGGCCA 2 cut(s) 73, 144
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 76, 160, 163, 364
Mox20I TGGCCA 2 cut(s) 73, 144
MscI TGGCCA 2 cut(s) 73, 144
Msp20I TGGCCA 2 cut(s) 73, 144
MspI CCGG 2 cut(s) 47, 387
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 39, 79
NdeII GATC 3 cut(s) 119, 202, 208
NlaIII CATG 4 cut(s) 42, 143, 235, 329
NlaIV GGNNCC 3 cut(s) 114, 250, 352
NmeAIII GCCGAG 1 cut(s) 287
NspI RCATGY 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 3 cut(s) 32, 175, 180
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 114, 250, 352
PspPI GGNCC 2 cut(s) 63, 240
PspPPI RGGWCCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SatI GCNGC 3 cut(s) 31, 174, 179
Sau3AI GATC 3 cut(s) 119, 202, 208
Sau96I GGNCC 2 cut(s) 63, 240
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 117, 220
SetI ASST 4 cut(s) 65, 293, 356, 363
SinI GGWCC 1 cut(s) 63
Sse9I AATT 2 cut(s) 86, 146
SsiI CCGC 4 cut(s) 30, 173, 178, 274
SspMI CTAG 3 cut(s) 6, 206, 399
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 23, 161, 201
TasI AATT 2 cut(s) 86, 146
TauI GCSGC 3 cut(s) 33, 176, 181
TscAI CASTG 1 cut(s) 250
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 15
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 3 cut(s) 6, 206, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.