Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0025266

Physical Location & Seq

Genomic Coordinates Forward (+)

25743789 .. 25747696

Gene Structure 3908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTTTGGACAATAAACAGGAGAAGGGAGATGGAATTGAAAATCAGAGAAAGAAAGATAAGAAGAAGCTTGAAGTAAAGATCAAAGAAGATGCTTTTTTCATTAAGGATTTGAAACTTGGGAAATACTGGATAGTTACTAGGAAGTTGAGGCAGAGGATATGGGACCTAATTAGTACATTTGATTTACTGGTTAAAAAGCTGCATCAGGAAAAGAAGCTTGAAATGCTAGAGAACAAGGATATTAATACTAACTATGTTCGCATTGAGCGTGAAGAAATGATTCAAGTTGCACTCTTGTGTACTCAATGCCTTCCTGGTCATAGGCCCAGAATGTCTAAAGTGGTCAGAATGCTAGAAGCTAGCTCCAGTAATTACCCCAAATTTACAACATCGCTGGAGCCCTCCAAGCTCCTATGCTGCGGCGGCAACAAACACAGTGGCTCTAGCCGCATTGAACCACCAAGATGCCTAGTCCTACCAGAGGTGGATATGCTTTTCTACTTCTCTAATCCCACTTGGGTGGATACTTCTGTCCGGCGGACCAAGGTGGGTTTGAGCGACATTATCACACAAAGATGGAGCGTCAGAGTTGCAGAGATGCTCTCGGTGACTATGAAGAAAGACCCTGCCCTTCACGTGTTGTCGTCAGGGTCGAAGGGCGGTGCTACATGCTTACCGGAGTCATTAGACAAGTCCTCTTGGCTGGAGTTGCAGGAATTATTGGTGGTTTGGATGACCTGGGTGCCCAGATCATTACAGGCTGAAAACCATGGCCAATTCTGGATGGGTTTGATGGAGGAGGCAGCGCGGCTACTTGCTTCTCTCTCATTCGATCTAGATCGTTGTGCTCCTGCCTACTCCATCTTCTGGCCCGGTGGCTCCATCTCATCTTCGTACAACAGGCGGGGGTGGAAAGACACTTGCTTCTACAAGAACTCAGCTTGGATGGAGTTCCATGACAAGAAGGGCTCCAATGGTGGTACCTCTGATGTTAGCGTCGTCGTCTTAGGGTTCCGGCAGTCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

344

Amino Acids

39.28

Weight (kDa)

9.26

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025266)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012201 RLG00000013070 RLG00000013074

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	983
AccB1I	GGYRCC	2 cut(s)	745, 983
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccII	CGCG	1 cut(s)	811
AciI	CCGC	7 cut(s)	423, 426, 451, 541, 663, 811, 907
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	640
AfaI	GTAC	4 cut(s)	178, 304, 899, 985
AfiI	CCNNNNNNNGG	2 cut(s)	484, 870
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	6 cut(s)	41, 74, 115, 224, 287, 458
AjnI	CCWGG	2 cut(s)	316, 740
AleI	CACNNNNGTG	2 cut(s)	298, 521
AluBI	AGCT	7 cut(s)	70, 202, 220, 362, 366, 412, 944
AluI	AGCT	7 cut(s)	70, 202, 220, 362, 366, 412, 944
Alw21I	GWGCWC	1 cut(s)	853
AoxI	GGCC	3 cut(s)	326, 775, 872
ApeKI	GCWGC	3 cut(s)	202, 420, 806
ApoI	RAATTY	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	4 cut(s)	166, 327, 543, 873
AsuC2I	CCSGG	1 cut(s)	876
AsuHPI	GGTGA	1 cut(s)	622
AsuNHI	GCTAGC	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	166, 543
BaeGI	GKGCMC	1 cut(s)	750
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BalI	TGGCCA	1 cut(s)	777
BanI	GGYRCC	2 cut(s)	745, 983
BanII	GRGCYC	2 cut(s)	405, 974
BbrPI	CACGTG	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	3 cut(s)	189, 407, 818
BccI	CCATC	7 cut(s)	26, 573, 781, 790, 872, 893, 943
BciT130I	CCWGG	2 cut(s)	318, 742
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	876
BfaI	CTAG	8 cut(s)	141, 230, 356, 363, 447, 473, 839, 1030
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	7 cut(s)	203, 421, 424, 427, 451, 807, 812
BlsI	GCNGC	7 cut(s)	204, 422, 425, 428, 452, 808, 813
Bme1390I	CCNGG	3 cut(s)	318, 742, 876
Bme18I	GGWCC	2 cut(s)	166, 543
BmgT120I	GGNCC	4 cut(s)	166, 327, 543, 873
BmiI	GGNNCC	7 cut(s)	167, 402, 747, 883, 973, 985, 1016
BmrFI	CCNGG	3 cut(s)	318, 742, 876
BmsI	GCATC	4 cut(s)	82, 214, 458, 591
BmtI	GCTAGC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	3 cut(s)	352, 419, 728
BpuMI	CCSGG	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	546, 741, 772
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 870
Bse1I	ACTGG	3 cut(s)	134, 195, 369
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	2 cut(s)	318, 742
BseDI	CCNNGG	3 cut(s)	546, 741, 772
BseGI	GGATG	3 cut(s)	741, 792, 954
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	2 cut(s)	484, 870
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	134, 195, 369
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	3 cut(s)	189, 407, 818
Bsh1236I	CGCG	1 cut(s)	811
BshFI	GGCC	3 cut(s)	328, 777, 874
BshNI	GGYRCC	2 cut(s)	745, 983
BsiHKAI	GWGCWC	1 cut(s)	853
BsiSI	CCGG	4 cut(s)	538, 680, 876, 1018
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	484, 870
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	328, 777, 874
Bsp1286I	GDGCHC	4 cut(s)	405, 750, 853, 974
Bsp143I	GATC	4 cut(s)	81, 752, 835, 841
Bsp19I	CCATGG	1 cut(s)	772
BspACI	CCGC	7 cut(s)	423, 426, 451, 541, 663, 811, 907
BspANI	GGCC	3 cut(s)	328, 777, 874
BspCNI	CTCAG	1 cut(s)	953
BspFNI	CGCG	1 cut(s)	811
BspLI	GGNNCC	7 cut(s)	167, 402, 747, 883, 973, 985, 1016
BspOI	GCTAGC	1 cut(s)	366
BspT107I	GGYRCC	2 cut(s)	745, 983
BsrI	ACTGG	3 cut(s)	134, 195, 369
BssECI	CCNNGG	3 cut(s)	546, 741, 772
BssMI	GATC	4 cut(s)	81, 752, 835, 841
BssT1I	CCWWGG	2 cut(s)	546, 772
Bst2UI	CCWGG	2 cut(s)	318, 742
Bst4CI	ACNGT	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	940, 1009
BstDSI	CCRYGG	1 cut(s)	772
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	741, 792, 954
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	4 cut(s)	84, 755, 838, 844
BstMBI	GATC	4 cut(s)	81, 752, 835, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	226, 409, 426, 450, 712
BstNI	CCWGG	2 cut(s)	318, 742
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	316, 740, 874
BstSLI	GKGCMC	1 cut(s)	750
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	3 cut(s)	189, 407, 818
BstXI	CCANNNNNNTGG	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	328, 777, 874
BtgI	CCRYGG	1 cut(s)	772
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	741, 792, 954
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	4 cut(s)	166, 327, 543, 873
CseI	GACGC	2 cut(s)	574, 988
Csp6I	GTAC	4 cut(s)	177, 303, 898, 984
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	3 cut(s)	672, 773, 959
CviQI	GTAC	4 cut(s)	177, 303, 898, 984
DdeI	CTNAG	2 cut(s)	940, 1009
DpnI	GATC	4 cut(s)	83, 754, 837, 843
DpnII	GATC	4 cut(s)	81, 752, 835, 841
EaeI	YGGCCR	1 cut(s)	775
EciI	GGCGGA	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	546, 772
Eco24I	GRGCYC	2 cut(s)	405, 974
Eco47I	GGWCC	2 cut(s)	166, 543
Eco72I	CACGTG	1 cut(s)	640
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	316, 740
EcoT14I	CCWWGG	2 cut(s)	546, 772
EcoT38I	GRGCYC	2 cut(s)	405, 974
ErhI	CCWWGG	2 cut(s)	546, 772
FaeI	CATG	3 cut(s)	675, 776, 962
FaiI	YATR	9 cut(s)	163, 258, 324, 418, 494, 617, 673, 774, 960
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	671, 772, 958
FauI	CCCGC	1 cut(s)	900
Fnu4HI	GCNGC	7 cut(s)	203, 421, 424, 427, 451, 807, 812
FokI	GGATG	3 cut(s)	748, 799, 961
FriOI	GRGCYC	2 cut(s)	405, 974
Fsp4HI	GCNGC	7 cut(s)	203, 421, 424, 427, 451, 807, 812
FspBI	CTAG	8 cut(s)	141, 230, 356, 363, 447, 473, 839, 1030
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	7 cut(s)	203, 421, 424, 427, 451, 807, 812
GsuI	CTGGAG	3 cut(s)	352, 419, 728
HaeIII	GGCC	3 cut(s)	328, 777, 874
HapII	CCGG	4 cut(s)	538, 680, 876, 1018
HgaI	GACGC	2 cut(s)	574, 988
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	3 cut(s)	675, 776, 962
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HindIII	AAGCTT	2 cut(s)	68, 218
HinfI	GANTC	2 cut(s)	283, 683
HpaII	CCGG	4 cut(s)	538, 680, 876, 1018
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	48, 350, 590, 991
Hpy188III	TCNNGA	3 cut(s)	209, 784, 839
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	2 cut(s)	1004, 1007
HpyAV	CCTTC	5 cut(s)	19, 323, 644, 652, 961
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	4 cut(s)	205, 293, 596, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	226, 409, 426, 450, 712
HpyF3I	CTNAG	2 cut(s)	940, 1009
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	675, 776, 962
HspAI	GCGC	1 cut(s)	809
KpnI	GGTACC	1 cut(s)	987
Kzo9I	GATC	4 cut(s)	81, 752, 835, 841
LmnI	GCTCC	7 cut(s)	371, 400, 417, 582, 856, 887, 977
Lsp1109I	GCAGC	3 cut(s)	189, 407, 818
LweI	GCATC	4 cut(s)	82, 214, 458, 591
MaeI	CTAG	8 cut(s)	141, 230, 356, 363, 447, 473, 839, 1030
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	136, 610
MalI	GATC	4 cut(s)	83, 754, 837, 843
MboI	GATC	4 cut(s)	81, 752, 835, 841
MboII	GAAGA	6 cut(s)	76, 101, 287, 631, 859, 885
MhlI	GDGCHC	4 cut(s)	405, 750, 853, 974
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	6 cut(s)	36, 171, 373, 383, 719, 779
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	1 cut(s)	692
MnlI	CCTC	8 cut(s)	144, 150, 415, 478, 709, 793, 796, 997
Mox20I	TGGCCA	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	3 cut(s)	105, 195, 246
MslI	CAYNNNNRTG	4 cut(s)	298, 466, 521, 577
Msp20I	TGGCCA	1 cut(s)	777
MspI	CCGG	4 cut(s)	538, 680, 876, 1018
MspR9I	CCNGG	3 cut(s)	318, 742, 876
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	318, 742
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	5 cut(s)	226, 409, 426, 450, 712
NciI	CCSGG	1 cut(s)	876
NcoI	CCATGG	1 cut(s)	772
NdeII	GATC	4 cut(s)	81, 752, 835, 841
NheI	GCTAGC	1 cut(s)	362
NlaIII	CATG	3 cut(s)	675, 776, 962
NlaIV	GGNNCC	7 cut(s)	167, 402, 747, 883, 973, 985, 1016
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	675
OliI	CACNNNNGTG	2 cut(s)	298, 521
PcsI	WCGNNNNNNNCGW	2 cut(s)	268, 653
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	870
PkrI	GCNGC	7 cut(s)	204, 422, 425, 428, 452, 808, 813
PleI	GAGTC	1 cut(s)	691
PmaCI	CACGTG	1 cut(s)	640
PmlI	CACGTG	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	1 cut(s)	640
PpuMI	RGGWCCY	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	316, 740
PspCI	CACGTG	1 cut(s)	640
PspGI	CCWGG	2 cut(s)	316, 740
PspN4I	GGNNCC	7 cut(s)	167, 402, 747, 883, 973, 985, 1016
PspPI	GGNCC	4 cut(s)	166, 327, 543, 873
PspPPI	RGGWCCY	1 cut(s)	166
RsaI	GTAC	4 cut(s)	178, 304, 899, 985
RsaNI	GTAC	4 cut(s)	177, 303, 898, 984
RseI	CAYNNNNRTG	4 cut(s)	298, 466, 521, 577
SaqAI	TTAA	3 cut(s)	105, 195, 246
SatI	GCNGC	7 cut(s)	203, 421, 424, 427, 451, 807, 812
Sau3AI	GATC	4 cut(s)	81, 752, 835, 841
Sau96I	GGNCC	4 cut(s)	166, 327, 543, 873
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	3 cut(s)	318, 742, 876
SduI	GDGCHC	4 cut(s)	405, 750, 853, 974
SfaNI	GCATC	4 cut(s)	82, 214, 458, 591
SinI	GGWCC	2 cut(s)	166, 543
SmiMI	CAYNNNNRTG	4 cut(s)	298, 466, 521, 577
Sse9I	AATT	6 cut(s)	36, 171, 373, 383, 719, 779
SsiI	CCGC	7 cut(s)	423, 426, 451, 541, 663, 811, 907
SspMI	CTAG	8 cut(s)	141, 230, 356, 363, 447, 473, 839, 1030
StyD4I	CCNGG	3 cut(s)	316, 740, 874
StyI	CCWWGG	2 cut(s)	546, 772
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	656, 834
TasI	AATT	6 cut(s)	36, 171, 373, 383, 719, 779
TatI	WGTACW	2 cut(s)	176, 302
TauI	GCSGC	4 cut(s)	426, 429, 453, 814
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	105, 195, 246
Tru9I	TTAA	3 cut(s)	105, 195, 246
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	202, 420, 806
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	91, 632
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	870
VpaK11BI	GGWCC	2 cut(s)	166, 543
VspI	ATTAAT	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	8 cut(s)	141, 230, 356, 363, 447, 473, 839, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.