TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0251611 |
| rosa_laevigata | RLG00000015455 RLG00000015456 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 85 |
| Acc36I | ACCTGC | 1 cut(s) | 85 |
| AciI | CCGC | 1 cut(s) | 221 |
| AclWI | GGATC | 3 cut(s) | 89, 102, 209 |
| AcsI | RAATTY | 1 cut(s) | 577 |
| AcuI | CTGAAG | 1 cut(s) | 72 |
| AfaI | GTAC | 1 cut(s) | 246 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 176 |
| AgsI | TTSAA | 5 cut(s) | 189, 462, 497, 520, 616 |
| AjiI | CACGTC | 1 cut(s) | 544 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 103, 135, 231, 263 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 315, 347 |
| AluBI | AGCT | 3 cut(s) | 296, 446, 481 |
| AluI | AGCT | 3 cut(s) | 296, 446, 481 |
| Alw26I | GTCTC | 2 cut(s) | 500, 617 |
| AlwI | GGATC | 3 cut(s) | 89, 102, 209 |
| Ama87I | CYCGRG | 1 cut(s) | 368 |
| ApeKI | GCWGC | 1 cut(s) | 293 |
| ApoI | RAATTY | 1 cut(s) | 577 |
| AvaI | CYCGRG | 1 cut(s) | 368 |
| BamHI | GGATCC | 1 cut(s) | 94 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| BbvI | GCAGC | 1 cut(s) | 305 |
| BccI | CCATC | 2 cut(s) | 259, 559 |
| BciVI | GTATCC | 1 cut(s) | 349 |
| BcoDI | GTCTC | 2 cut(s) | 500, 617 |
| BfuAI | ACCTGC | 1 cut(s) | 85 |
| BfuI | GTATCC | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 294 |
| BlsI | GCNGC | 1 cut(s) | 295 |
| BmcAI | AGTACT | 1 cut(s) | 246 |
| BmeT110I | CYCGRG | 1 cut(s) | 368 |
| BmgBI | CACGTC | 1 cut(s) | 544 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| BpmI | CTGGAG | 2 cut(s) | 32, 273 |
| BsaJI | CCNNGG | 1 cut(s) | 334 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 109, 139 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 176 |
| Bse1I | ACTGG | 2 cut(s) | 49, 530 |
| Bse3DI | GCAATG | 1 cut(s) | 342 |
| BseDI | CCNNGG | 1 cut(s) | 334 |
| BseGI | GGATG | 2 cut(s) | 105, 157 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BseMI | GCAATG | 1 cut(s) | 342 |
| BseNI | ACTGG | 2 cut(s) | 49, 530 |
| BseRI | GAGGAG | 2 cut(s) | 114, 491 |
| BseXI | GCAGC | 1 cut(s) | 305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 368 |
| BslFI | GGGAC | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BsmAI | GTCTC | 2 cut(s) | 500, 617 |
| BsmFI | GGGAC | 1 cut(s) | 390 |
| BsmI | GAATGC | 2 cut(s) | 347, 503 |
| BsoBI | CYCGRG | 1 cut(s) | 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp143I | GATC | 2 cut(s) | 94, 214 |
| BspACI | CCGC | 1 cut(s) | 221 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BspMI | ACCTGC | 1 cut(s) | 85 |
| BspPI | GGATC | 3 cut(s) | 89, 102, 209 |
| BsrDI | GCAATG | 1 cut(s) | 342 |
| BsrI | ACTGG | 2 cut(s) | 49, 530 |
| BssECI | CCNNGG | 1 cut(s) | 334 |
| BssMI | GATC | 2 cut(s) | 94, 214 |
| BssT1I | CCWWGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 244 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 307, 498, 615, 642 |
| BstC8I | GCNNGC | 1 cut(s) | 599 |
| BstF5I | GGATG | 2 cut(s) | 105, 157 |
| BstKTI | GATC | 2 cut(s) | 97, 217 |
| BstMAI | GTCTC | 2 cut(s) | 500, 617 |
| BstMBI | GATC | 2 cut(s) | 94, 214 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 452 |
| BstV1I | GCAGC | 1 cut(s) | 305 |
| BstX2I | RGATCY | 2 cut(s) | 94, 214 |
| BstYI | RGATCY | 2 cut(s) | 94, 214 |
| BsuI | GTATCC | 1 cut(s) | 349 |
| BtrI | CACGTC | 1 cut(s) | 544 |
| BtsCI | GGATG | 2 cut(s) | 105, 157 |
| BveI | ACCTGC | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 599 |
| Csp6I | GTAC | 1 cut(s) | 245 |
| CviAII | CATG | 3 cut(s) | 275, 326, 465 |
| CviJI | RGCY | 8 cut(s) | 161, 263, 296, 312, 446, 481, 516, 655 |
| CviKI_1 | RGCY | 8 cut(s) | 161, 263, 296, 312, 446, 481, 516, 655 |
| CviQI | GTAC | 1 cut(s) | 245 |
| DpnI | GATC | 2 cut(s) | 96, 216 |
| DpnII | GATC | 2 cut(s) | 94, 214 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 307, 498, 615, 642 |
| EarI | CTCTTC | 5 cut(s) | 45, 307, 498, 615, 642 |
| Eco130I | CCWWGG | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco57I | CTGAAG | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 1 cut(s) | 368 |
| EcoT14I | CCWWGG | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| ErhI | CCWWGG | 1 cut(s) | 334 |
| FaeI | CATG | 3 cut(s) | 278, 329, 468 |
| FaiI | YATR | 6 cut(s) | 147, 197, 276, 327, 453, 466 |
| FaqI | GGGAC | 1 cut(s) | 390 |
| FatI | CATG | 3 cut(s) | 274, 325, 464 |
| Fnu4HI | GCNGC | 1 cut(s) | 294 |
| FokI | GGATG | 2 cut(s) | 92, 164 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 294 |
| GluI | GCNGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 2 cut(s) | 32, 273 |
| Hin1II | CATG | 3 cut(s) | 278, 329, 468 |
| HinfI | GANTC | 4 cut(s) | 164, 224, 339, 416 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 202, 394, 556 |
| Hpy188III | TCNNGA | 3 cut(s) | 370, 400, 420 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| Hpy99I | CGWCG | 1 cut(s) | 548 |
| HpyAV | CCTTC | 2 cut(s) | 195, 627 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 244 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 543 |
| HpyCH4V | TGCA | 3 cut(s) | 347, 428, 597 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 452 |
| HpySE526I | ACGT | 2 cut(s) | 174, 543 |
| Hsp92II | CATG | 3 cut(s) | 278, 329, 468 |
| Kzo9I | GATC | 2 cut(s) | 94, 214 |
| LmnI | GCTCC | 1 cut(s) | 478 |
| Lsp1109I | GCAGC | 1 cut(s) | 305 |
| MaeII | ACGT | 2 cut(s) | 174, 543 |
| MalI | GATC | 2 cut(s) | 96, 216 |
| MboI | GATC | 2 cut(s) | 94, 214 |
| MflI | RGATCY | 2 cut(s) | 94, 214 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 4 cut(s) | 58, 137, 423, 577 |
| MnlI | CCTC | 9 cut(s) | 23, 32, 85, 135, 202, 297, 310, 366, 469 |
| MseI | TTAA | 1 cut(s) | 57 |
| MslI | CAYNNNNRTG | 1 cut(s) | 150 |
| MspA1I | CMGCKG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 2 cut(s) | 347, 503 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 452 |
| NdeII | GATC | 2 cut(s) | 94, 214 |
| NlaIII | CATG | 3 cut(s) | 278, 329, 468 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PaqCI | CACCTGC | 1 cut(s) | 85 |
| PctI | GAATGC | 2 cut(s) | 347, 503 |
| PfeI | GAWTC | 4 cut(s) | 164, 224, 339, 416 |
| PkrI | GCNGC | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PsuI | RGATCY | 2 cut(s) | 94, 214 |
| RsaI | GTAC | 1 cut(s) | 246 |
| RsaNI | GTAC | 1 cut(s) | 245 |
| RseI | CAYNNNNRTG | 1 cut(s) | 150 |
| SaqAI | TTAA | 1 cut(s) | 57 |
| SatI | GCNGC | 1 cut(s) | 294 |
| Sau3AI | GATC | 2 cut(s) | 94, 214 |
| ScaI | AGTACT | 1 cut(s) | 246 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SetI | ASST | 9 cut(s) | 79, 118, 177, 181, 298, 448, 483, 546, 638 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 150 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 4 cut(s) | 58, 137, 423, 577 |
| SsiI | CCGC | 1 cut(s) | 221 |
| StyI | CCWWGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 2 cut(s) | 10, 244 |
| TaiI | ACGT | 2 cut(s) | 177, 546 |
| TaqI | TCGA | 2 cut(s) | 369, 546 |
| TasI | AATT | 4 cut(s) | 58, 137, 423, 577 |
| TatI | WGTACW | 1 cut(s) | 244 |
| TfiI | GAWTC | 4 cut(s) | 164, 224, 339, 416 |
| Tru1I | TTAA | 1 cut(s) | 57 |
| Tru9I | TTAA | 1 cut(s) | 57 |
| TseI | GCWGC | 1 cut(s) | 293 |
| TspDTI | ATGAA | 1 cut(s) | 378 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| XapI | RAATTY | 1 cut(s) | 577 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| ZrmI | AGTACT | 1 cut(s) | 246 |