RLG00000015456

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025072
Physical Location & Seq
Forward (+)
66286326 .. 66287129
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015456

Sequence Viewer

Length: 804 bp
ATGTTGACCGTCCTCCTTTTCCTCATTCTCCTTGTTTCCCTTCTTCTTCAGTTTCTTAATGATCTTCTAGTACCATCTGCCCAATCTCCAGCGGATTCCCGGAACATCCAAATACCTGCATCTCGTTCAGACCGTAAATCAGAACATGAGGAAGTTTCAGCGGATTCCCCGAACATCCAAATACCAGCATCTCCTTCAAACCCTAGATCAGAATATGAGGAAGTTCCAGCATATTCCACAAACACCCAAACAGTACTTTCATCTCTTTCAGCCCCAATGGAACATGAGAAAGTTCCTCCAGCAGCTTCCTCTTCTTCGGGCTCAACATTGGAACATGATGTCGTATCCCATGATGTCTTCCTCAGTTTTAGAGGTGAAGACACCCGCCATGGTTTTACTGACCATTTGTATCATGCTATGATTCAGCAAGGAATCATTGCATTCAGGGATACAGAAAAACTCGAGAGGGGACATTCCATTTCATCAGAACTCCTGAAAGCAATACAAGAATCCCGAATTGCAGTCATCATTCTTTCAGCTAACTATGCTACTTCAACATGGTGTTTGGAGGAGCTTTCACAAATTGTTGAATGCAAAGAGACAACGGGGTTGAAAGTTTTACCAGTCTTTTATCACGTCGAACCATCAGAAGTAAGGAAGCAAACAGGAAATTTTTACAAGGCGTTTTGCAAGCACGAAGAAACTTTCAAAGAAGACATGGGGAAGGTGGAGAAGTGGAGAGAAGCCCTAAACAAGGTAGCCAATCTCTCCGGATGGACCGAATGGGATTTGAAAGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

268

Amino Acids

29.97

Weight (kDa)

5.4

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 117 - 265 5.9e-53 TIR domain
TIR_2 PF13676 119 - 216 1.4e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025072)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251611
rosa_laevigata RLG00000015455 RLG00000015456

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 770
AciI CCGC 3 cut(s) 92, 161, 385
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 72, 255
AfiI CCNNNNNNNGG 1 cut(s) 754
AgsI TTSAA 6 cut(s) 198, 555, 590, 613, 709, 793
AjiI CACGTC 1 cut(s) 637
AluBI AGCT 3 cut(s) 305, 539, 574
AluI AGCT 3 cut(s) 305, 539, 574
Alw26I GTCTC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 770
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 670
AspS9I GGNCC 1 cut(s) 777
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 3 cut(s) 349, 384, 720
BbvI GCAGC 1 cut(s) 314
BccI CCATC 3 cut(s) 82, 652, 768
BciVI GTATCC 2 cut(s) 355, 442
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 2 cut(s) 68, 204
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 2 cut(s) 355, 442
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 777
BmeT110I CYCGRG 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 777
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 128, 197
BpiI GAAGAC 3 cut(s) 349, 384, 720
BpmI CTGGAG 2 cut(s) 72, 282
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 770
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 3 cut(s) 105, 174, 779
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 100, 771
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 2 cut(s) 440, 596
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 770
Bsp143I GATC 2 cut(s) 61, 206
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 3 cut(s) 92, 161, 385
BspCNI CTCAG 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 770
BspMI ACCTGC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 61, 206
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 3 cut(s) 10, 134, 253
Bst6I CTCTTC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 692
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 388
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 3 cut(s) 105, 174, 779
BstKTI GATC 2 cut(s) 64, 209
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 2 cut(s) 61, 206
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 3 cut(s) 349, 384, 720
BsuI GTATCC 2 cut(s) 355, 442
BtgI CCRYGG 1 cut(s) 388
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 105, 174, 779
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 692
Cfr13I GGNCC 1 cut(s) 777
Csp6I GTAC 2 cut(s) 71, 254
CviAII CATG 8 cut(s) 146, 284, 335, 350, 389, 413, 558, 718
CviJI RGCY 7 cut(s) 272, 305, 321, 539, 574, 746, 761
CviKI_1 RGCY 7 cut(s) 272, 305, 321, 539, 574, 746, 761
CviQI GTAC 2 cut(s) 71, 254
DdeI CTNAG 1 cut(s) 362
DpnI GATC 2 cut(s) 63, 208
DpnII GATC 2 cut(s) 61, 206
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 461
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 8 cut(s) 149, 287, 338, 353, 392, 416, 561, 721
FaqI GGGAC 1 cut(s) 483
FatI CATG 8 cut(s) 145, 283, 334, 349, 388, 412, 557, 717
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 3 cut(s) 92, 161, 786
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 68, 204
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 72, 282
HapII CCGG 2 cut(s) 100, 771
Hin1II CATG 8 cut(s) 149, 287, 338, 353, 392, 416, 561, 721
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 95, 164, 421, 432, 509
HpaII CCGG 2 cut(s) 100, 771
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 130, 142, 211, 487, 649
Hpy188III TCNNGA 4 cut(s) 463, 493, 513, 771
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 4 cut(s) 50, 204, 718, 792
HpyCH4III ACNGT 3 cut(s) 10, 134, 253
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 5 cut(s) 119, 440, 521, 594, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 8 cut(s) 149, 287, 338, 353, 392, 416, 561, 721
Kpn2I TCCGGA 1 cut(s) 770
Kzo9I GATC 2 cut(s) 61, 206
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 2 cut(s) 128, 197
MaeI CTAG 2 cut(s) 68, 204
MaeII ACGT 1 cut(s) 636
MalI GATC 2 cut(s) 63, 208
MboI GATC 2 cut(s) 61, 206
MboII GAAGA 9 cut(s) 35, 38, 56, 303, 306, 349, 389, 710, 725
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 3 cut(s) 516, 582, 670
MroI TCCGGA 1 cut(s) 770
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 92, 161
MspI CCGG 2 cut(s) 100, 771
MspR9I CCNGG 1 cut(s) 100
Mva1269I GAATGC 2 cut(s) 440, 596
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 388
NdeII GATC 2 cut(s) 61, 206
NlaIII CATG 8 cut(s) 149, 287, 338, 353, 392, 416, 561, 721
PaeR7I CTCGAG 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 2 cut(s) 440, 596
PfeI GAWTC 5 cut(s) 95, 164, 421, 432, 509
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 777
RsaI GTAC 2 cut(s) 72, 255
RsaNI GTAC 2 cut(s) 71, 254
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 61, 206
Sau96I GGNCC 1 cut(s) 777
ScaI AGTACT 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 323
SetI ASST 9 cut(s) 118, 307, 376, 541, 576, 639, 729, 759, 803
SfaNI GCATC 2 cut(s) 128, 197
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 777
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 3 cut(s) 516, 582, 670
SsiI CCGC 3 cut(s) 92, 161, 385
SspMI CTAG 2 cut(s) 68, 204
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 3 cut(s) 10, 134, 253
TaiI ACGT 1 cut(s) 639
TaqI TCGA 2 cut(s) 462, 639
TaqII GACCGA 1 cut(s) 794
TasI AATT 3 cut(s) 516, 582, 670
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 5 cut(s) 95, 164, 421, 432, 509
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 249, 471
VpaK11BI GGWCC 1 cut(s) 777
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 670
XhoI CTCGAG 1 cut(s) 461
XspI CTAG 2 cut(s) 68, 204
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.