RLG00000016316

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0022496
Physical Location & Seq
Forward (+)
5630100 .. 5630615
516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016316

Sequence Viewer

Length: 516 bp
ATGGGCGATATAAAGTTGACGCTTGATAGTGCATGGGATTGCGGGTTATACGAACCCACTGAAGCCTTGAGAAGCAAAACTACCTCTACTTCTGGTACGACTACTACTAATACTGTTATTACCTTTTCGTTATTATCAAGTAGCTATTCTTATTCTTCTTCTGGAGCACCATCTCACCAACCAGTTCCAAATCACGGCTTTTTGCAACGTTCTCTCACTTTGGCAAAGCCTAATCATGGAAGTCTTACGAAGATTTTCAAGCATTTTTGGACATGCGTCAAGCCAAGGATGTTAGATGATTCAGATTTAAGGCCACCTGCAGCAAAAGAACAGAAACAAGGAGGGAAGGCGCCACATGATGCCGGCTCAACCAAGAGAAGAACTACAAGGCTTGTGCATTCACCACAACGCATACCGACTTCTCCCAATAATTCTGCAATGAGTCCAGATGTACGCGATGAATATCTAAAAGAGGCCATCCTCTACTGCAATAAGTCTGGAAAATCAGTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

9.43

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022496)

Species Orthologous Gene IDs
prunus_persica Prupe.7G215200_v2.0.a1
rosa_laevigata RLG00000016316
rosa_samantha Rh2BG073300 Rh2CG074600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 349
AccII CGCG 1 cut(s) 456
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 2 cut(s) 97, 453
AfiI CCNNNNNNNGG 2 cut(s) 194, 236
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 2 cut(s) 311, 474
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 167, 393
BanI GGYRCC 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 178, 485
BceAI ACGGC 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 236
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 294, 477
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 194, 236
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 2 cut(s) 313, 476
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 194, 236
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 2 cut(s) 313, 476
Bsp1286I GDGCHC 1 cut(s) 169
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 313, 476
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 294, 477
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 276
BstPAI GACNNNNGTC 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 313, 476
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 294, 477
BtsIMutI CAGTG 2 cut(s) 57, 513
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 362
CseI GACGC 2 cut(s) 28, 265
Csp6I GTAC 2 cut(s) 96, 452
CviAII CATG 4 cut(s) 33, 236, 273, 356
CviJI RGCY 9 cut(s) 65, 144, 198, 229, 283, 313, 366, 391, 476
CviKI_1 RGCY 9 cut(s) 65, 144, 198, 229, 283, 313, 366, 391, 476
CviQI GTAC 2 cut(s) 96, 452
DinI GGCGCC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 351
EheI GGCGCC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 4 cut(s) 36, 239, 276, 359
FaiI YATR 7 cut(s) 11, 34, 49, 237, 274, 357, 413
FatI CATG 4 cut(s) 32, 235, 272, 355
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 301, 464
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 2 cut(s) 313, 476
HapII CCGG 1 cut(s) 363
HgaI GACGC 2 cut(s) 28, 265
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 4 cut(s) 36, 239, 276, 359
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 299, 442
HpaII CCGG 1 cut(s) 363
HphI GGTGA 2 cut(s) 167, 393
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 162, 446, 498
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 6 cut(s) 32, 205, 320, 397, 437, 489
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 4 cut(s) 36, 239, 276, 359
HspAI GCGC 1 cut(s) 350
KasI GGCGCC 1 cut(s) 349
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 78, 147, 195, 330, 376, 459, 483
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 349
MaeII ACGT 1 cut(s) 208
MboII GAAGA 4 cut(s) 147, 150, 262, 390
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 1 cut(s) 430
Mly113I GGCGCC 1 cut(s) 350
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 4 cut(s) 94, 335, 466, 491
MroNI GCCGGC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 2 cut(s) 308, 514
MspI CCGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 397
MvnI CGCG 1 cut(s) 456
NaeI GCCGGC 1 cut(s) 364
NarI GGCGCC 1 cut(s) 350
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 4 cut(s) 36, 239, 276, 359
NlaIV GGNNCC 1 cut(s) 351
NspI RCATGY 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 325
PctI GAATGC 1 cut(s) 397
PdiI GCCGGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 450
PluTI GGCGCC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 450
PshAI GACNNNNGTC 1 cut(s) 275
Psp1406I AACGTT 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 2 cut(s) 97, 453
RsaNI GTAC 2 cut(s) 96, 452
SaqAI TTAA 2 cut(s) 308, 514
SatI GCNGC 1 cut(s) 321
SchI GAGTC 1 cut(s) 451
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 86, 125, 146, 211, 319
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 318
SfoI GGCGCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 1 cut(s) 430
SsiI CCGC 1 cut(s) 42
SspDI GGCGCC 1 cut(s) 349
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 211
TasI AATT 1 cut(s) 430
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 308, 514
Tru9I TTAA 2 cut(s) 308, 514
TscAI CASTG 2 cut(s) 64, 513
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 2 cut(s) 64, 513
XceI RCATGY 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.