Rh2BG073300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0022496
Physical Location & Seq
Forward (+)
5551952 .. 5552754
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG073300.1

Sequence Viewer

Length: 387 bp
ATGGAAGTAGATTCTGTTTCCAAGCAATATCCCAACCATGAAAAGCTCAAGGGACATGTTCCAAATCACGGCTTTTTGCAACGTTCTCTCACTTTGGCAAAGCCTAATCGTGGAAGTCTTACGAAGATTTTCAAGCATTTTTGGACATGCGTCAAGCCAAGGATGTTAGATGATTCAGATTTAAGGCCACCTGCACCAAAAGAACAGAAACAAGGAGGGAAGGCGCCACATGATGCCGGCTCAACCAAGAGAAGAACTACAAGGCTTGTGCATTCACCACAACGCGTACCGACTTCTCCCAATTCTGCAATGAGTCCAGATGTACGCGATGAATATCTAAAAGAGGCCATCCTCTACTGCAATAAGTCTGGAAAATCAGTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.43

Weight (kDa)

9.86

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022496)

Species Orthologous Gene IDs
prunus_persica Prupe.7G215200_v2.0.a1
rosa_laevigata RLG00000016316
rosa_samantha Rh2BG073300 Rh2CG074600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 223
AccII CGCG 2 cut(s) 285, 327
AclI AACGTT 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 2 cut(s) 288, 324
AfiI CCNNNNNNNGG 2 cut(s) 68, 110
AflIII ACRYGT 2 cut(s) 55, 283
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AoxI GGCC 2 cut(s) 185, 345
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 223
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 110
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 168, 348
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 68, 110
BseMI GCAATG 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 285, 327
BshFI GGCC 2 cut(s) 187, 347
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 68, 110
BsmFI GGGAC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 187, 347
BspANI GGCC 2 cut(s) 187, 347
BspFNI CGCG 2 cut(s) 285, 327
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 238
BstF5I GGATG 2 cut(s) 168, 348
BstFNI CGCG 2 cut(s) 285, 327
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 59, 150
BstPAI GACNNNNGTC 1 cut(s) 149
BstUI CGCG 2 cut(s) 285, 327
BsuRI GGCC 2 cut(s) 187, 347
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 168, 348
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 236
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 287, 323
CviAII CATG 4 cut(s) 38, 56, 147, 230
CviJI RGCY 8 cut(s) 46, 72, 103, 157, 187, 240, 265, 347
CviKI_1 RGCY 8 cut(s) 46, 72, 103, 157, 187, 240, 265, 347
CviQI GTAC 2 cut(s) 287, 323
DinI GGCGCC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 158
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 4 cut(s) 41, 59, 150, 233
FaiI YATR 4 cut(s) 39, 57, 148, 231
FaqI GGGAC 1 cut(s) 66
FatI CATG 4 cut(s) 37, 55, 146, 229
FokI GGATG 2 cut(s) 175, 335
GlaI GCGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 2 cut(s) 187, 347
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 4 cut(s) 41, 59, 150, 233
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 3 cut(s) 11, 173, 313
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 317, 369
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 5 cut(s) 79, 194, 271, 308, 360
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 4 cut(s) 41, 59, 150, 233
HspAI GCGC 1 cut(s) 224
KasI GGCGCC 1 cut(s) 223
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 204, 250, 330, 354
LweI GCATC 1 cut(s) 223
MaeII ACGT 1 cut(s) 82
MboII GAAGA 2 cut(s) 136, 264
MluCI AATT 1 cut(s) 301
MluI ACGCGT 1 cut(s) 283
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 3 cut(s) 209, 337, 362
MroNI GCCGGC 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 182, 385
MspI CCGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 271
MvnI CGCG 2 cut(s) 285, 327
NaeI GCCGGC 1 cut(s) 238
NarI GGCGCC 1 cut(s) 224
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 4 cut(s) 41, 59, 150, 233
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 2 cut(s) 59, 150
PaqCI CACCTGC 1 cut(s) 199
PciI ACATGT 1 cut(s) 55
PctI GAATGC 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 11, 173
PleI GAGTC 1 cut(s) 321
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 321
PscI ACATGT 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 225
RsaI GTAC 2 cut(s) 288, 324
RsaNI GTAC 2 cut(s) 287, 323
SaqAI TTAA 2 cut(s) 182, 385
SchI GAGTC 1 cut(s) 322
SetI ASST 3 cut(s) 48, 85, 193
SfaNI GCATC 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 301
SspDI GGCGCC 1 cut(s) 223
StyI CCWWGG 1 cut(s) 158
TaiI ACGT 1 cut(s) 85
TasI AATT 1 cut(s) 301
TfiI GAWTC 2 cut(s) 11, 173
Tru1I TTAA 2 cut(s) 182, 385
Tru9I TTAA 2 cut(s) 182, 385
TscAI CASTG 1 cut(s) 384
TspDTI ATGAA 2 cut(s) 54, 345
TspRI CASTG 1 cut(s) 384
XceI RCATGY 2 cut(s) 59, 150
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.