Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67120 AT1G67120 |
| fragaria_vesca | FvH4_6g34300 |
| malus_domestica | MD05G1009600.v1.1 |
| prunus_persica | Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 |
| pyrus_communis | pycom05g00490 |
| rosa_chinensis | RchiOBHm_Chr2g0144641 |
| rosa_laevigata | RLG00000016484 RLG00000020098 |
| rosa_multiflora | Rmu_sc0000227.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00101100 |
| rosa_rugosa | Rorug02G0388300 |
| rosa_samantha | Rh2AG440300 Rh2BG450700 Rh2CG427400 Rh2DG460700 |
| rosa_wichuraiana | Rw2G036020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2648, 4947 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4873 |
| Acc16I | TGCGCA | 3 cut(s) | 893, 1489, 1772 |
| Acc36I | ACCTGC | 3 cut(s) | 685, 4456, 5500 |
| AccB1I | GGYRCC | 1 cut(s) | 655 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1180, 1872, 4885 |
| AccBSI | CCGCTC | 1 cut(s) | 13 |
| AccI | GTMKAC | 3 cut(s) | 1166, 1736, 2104 |
| AccII | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| AciI | CCGC | 7 cut(s) | 13, 81, 151, 1757, 3217, 5083, 5505 |
| AclI | AACGTT | 1 cut(s) | 5452 |
| AcoI | YGGCCR | 7 cut(s) | 1046, 1252, 2187, 3031, 3057, 4923, 5036 |
| AfaI | GTAC | 7 cut(s) | 244, 1325, 1556, 2869, 4012, 5003, 5562 |
| AfeI | AGCGCT | 1 cut(s) | 783 |
| AflIII | ACRYGT | 1 cut(s) | 5492 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5139 |
| AleI | CACNNNNGTG | 1 cut(s) | 2210 |
| Alw21I | GWGCWC | 7 cut(s) | 61, 138, 1847, 2402, 2526, 4128, 5625 |
| Alw26I | GTCTC | 4 cut(s) | 351, 3081, 5238, 5602 |
| Alw44I | GTGCAC | 1 cut(s) | 134 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1817 |
| Ama87I | CYCGRG | 1 cut(s) | 350 |
| Aor51HI | AGCGCT | 1 cut(s) | 783 |
| ApaLI | GTGCAC | 1 cut(s) | 134 |
| AseI | ATTAAT | 3 cut(s) | 1086, 1793, 2513 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 808, 2220, 5538 |
| AspA2I | CCTAGG | 1 cut(s) | 5585 |
| AspLEI | GCGC | 6 cut(s) | 532, 784, 894, 1372, 1490, 1773 |
| AspS9I | GGNCC | 8 cut(s) | 1746, 2564, 2662, 3125, 3718, 4445, 5031, 5589 |
| AsuC2I | CCSGG | 2 cut(s) | 534, 5035 |
| AsuHPI | GGTGA | 9 cut(s) | 2225, 2901, 2947, 3659, 4061, 4226, 4364, 4691, 4990 |
| AsuII | TTCGAA | 1 cut(s) | 3981 |
| AvaI | CYCGRG | 1 cut(s) | 350 |
| AvaII | GGWCC | 5 cut(s) | 1746, 3718, 4445, 5031, 5589 |
| AvrII | CCTAGG | 1 cut(s) | 5585 |
| AxyI | CCTNAGG | 1 cut(s) | 3141 |
| BaeGI | GKGCMC | 2 cut(s) | 138, 4366 |
| BalI | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| BamHI | GGATCC | 1 cut(s) | 745 |
| BanI | GGYRCC | 1 cut(s) | 655 |
| BanII | GRGCYC | 5 cut(s) | 304, 1464, 2526, 4128, 5625 |
| BauI | CACGAG | 1 cut(s) | 3165 |
| BbsI | GAAGAC | 5 cut(s) | 100, 1579, 1725, 3255, 3396 |
| Bbv12I | GWGCWC | 7 cut(s) | 61, 138, 1847, 2402, 2526, 4128, 5625 |
| BbvCI | CCTCAGC | 1 cut(s) | 3414 |
| BceAI | ACGGC | 3 cut(s) | 58, 4446, 5359 |
| BclI | TGATCA | 3 cut(s) | 982, 5227, 5302 |
| BcnI | CCSGG | 2 cut(s) | 534, 5035 |
| BcoDI | GTCTC | 4 cut(s) | 351, 3081, 5238, 5602 |
| BfmI | CTRYAG | 4 cut(s) | 49, 3723, 4335, 4764 |
| BfoI | RGCGCY | 2 cut(s) | 533, 785 |
| BfuAI | ACCTGC | 3 cut(s) | 685, 4456, 5500 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 159 |
| BglII | AGATCT | 3 cut(s) | 1414, 1492, 4339 |
| BlnI | CCTAGG | 1 cut(s) | 5585 |
| Bme18I | GGWCC | 5 cut(s) | 1746, 3718, 4445, 5031, 5589 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5139 |
| BmeT110I | CYCGRG | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 8 cut(s) | 1746, 2564, 2662, 3125, 3718, 4445, 5031, 5589 |
| BmiI | GGNNCC | 8 cut(s) | 657, 747, 1461, 3720, 4446, 4914, 5033, 5591 |
| BmrI | ACTGGG | 4 cut(s) | 1444, 3617, 4105, 4962 |
| BmuI | ACTGGG | 4 cut(s) | 1444, 3617, 4105, 4962 |
| BoxI | GACNNNNGTC | 3 cut(s) | 51, 3224, 5374 |
| BpiI | GAAGAC | 5 cut(s) | 100, 1579, 1725, 3255, 3396 |
| BpmI | CTGGAG | 4 cut(s) | 3465, 4864, 5262, 5271 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1535, 3414, 4239, 4434 |
| Bpu14I | TTCGAA | 1 cut(s) | 3981 |
| BpuEI | CTTGAG | 5 cut(s) | 338, 1273, 1406, 1613, 3162 |
| BpuMI | CCSGG | 2 cut(s) | 534, 5035 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3399 |
| BsaWI | WCCGGW | 1 cut(s) | 5481 |
| Bse118I | RCCGGY | 1 cut(s) | 1048 |
| Bse21I | CCTNAGG | 1 cut(s) | 3141 |
| Bse3DI | GCAATG | 5 cut(s) | 887, 1052, 2898, 3888, 5154 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3399 |
| BseJI | GATNNNNATC | 1 cut(s) | 3399 |
| BseMI | GCAATG | 5 cut(s) | 887, 1052, 2898, 3888, 5154 |
| BseRI | GAGGAG | 2 cut(s) | 422, 4409 |
| BseSI | GKGCMC | 2 cut(s) | 138, 4366 |
| BseYI | CCCAGC | 1 cut(s) | 3281 |
| BsgI | GTGCAG | 1 cut(s) | 1088 |
| Bsh1236I | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| Bsh1285I | CGRYCG | 1 cut(s) | 17 |
| BshNI | GGYRCC | 1 cut(s) | 655 |
| BsiEI | CGRYCG | 1 cut(s) | 17 |
| BsiHKAI | GWGCWC | 7 cut(s) | 61, 138, 1847, 2402, 2526, 4128, 5625 |
| BsiHKCI | CYCGRG | 1 cut(s) | 350 |
| BsiSI | CCGG | 4 cut(s) | 533, 1049, 5035, 5482 |
| BslFI | GGGAC | 5 cut(s) | 523, 1901, 4441, 4458, 4861 |
| BsmAI | GTCTC | 4 cut(s) | 351, 3081, 5238, 5602 |
| BsmBI | CGTCTC | 2 cut(s) | 351, 5238 |
| BsmFI | GGGAC | 5 cut(s) | 523, 1901, 4441, 4458, 4861 |
| BsmI | GAATGC | 2 cut(s) | 2348, 4834 |
| BsoBI | CYCGRG | 1 cut(s) | 350 |
| Bsp119I | TTCGAA | 1 cut(s) | 3981 |
| Bsp1407I | TGTACA | 1 cut(s) | 1323 |
| Bsp19I | CCATGG | 1 cut(s) | 3864 |
| Bsp68I | TCGCGA | 2 cut(s) | 146, 3098 |
| BspACI | CCGC | 7 cut(s) | 13, 81, 151, 1757, 3217, 5083, 5505 |
| BspFNI | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| BspHI | TCATGA | 2 cut(s) | 1444, 4669 |
| BspLI | GGNNCC | 8 cut(s) | 657, 747, 1461, 3720, 4446, 4914, 5033, 5591 |
| BspMAI | CTGCAG | 1 cut(s) | 53 |
| BspMI | ACCTGC | 3 cut(s) | 685, 4456, 5500 |
| BspQI | GCTCTTC | 1 cut(s) | 2136 |
| BspT104I | TTCGAA | 1 cut(s) | 3981 |
| BspT107I | GGYRCC | 1 cut(s) | 655 |
| BsrBI | CCGCTC | 1 cut(s) | 13 |
| BsrDI | GCAATG | 5 cut(s) | 887, 1052, 2898, 3888, 5154 |
| BsrFI | RCCGGY | 1 cut(s) | 1048 |
| BsrGI | TGTACA | 1 cut(s) | 1323 |
| BssAI | RCCGGY | 1 cut(s) | 1048 |
| BssNAI | GTATAC | 1 cut(s) | 1737 |
| BssSI | CACGAG | 1 cut(s) | 3165 |
| BssT1I | CCWWGG | 6 cut(s) | 900, 1249, 2544, 3864, 5469, 5585 |
| Bst1107I | GTATAC | 1 cut(s) | 1737 |
| Bst2BI | CACGAG | 1 cut(s) | 3165 |
| Bst4CI | ACNGT | 9 cut(s) | 133, 1561, 1705, 1782, 2457, 3073, 4286, 5137, 5613 |
| Bst6I | CTCTTC | 4 cut(s) | 399, 798, 1308, 2136 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2089, 4249 |
| BstAUI | TGTACA | 1 cut(s) | 1323 |
| BstBI | TTCGAA | 1 cut(s) | 3981 |
| BstC8I | GCNNGC | 7 cut(s) | 1050, 2856, 3559, 4927, 4931, 5185, 5507 |
| BstDSI | CCRYGG | 1 cut(s) | 3864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3910 |
| BstFNI | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| BstH2I | RGCGCY | 2 cut(s) | 533, 785 |
| BstHHI | GCGC | 6 cut(s) | 532, 784, 894, 1372, 1490, 1773 |
| BstMAI | GTCTC | 4 cut(s) | 351, 3081, 5238, 5602 |
| BstMCI | CGRYCG | 1 cut(s) | 17 |
| BstNSI | RCATGY | 2 cut(s) | 2423, 5496 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 51, 3224, 5374 |
| BstSFI | CTRYAG | 4 cut(s) | 49, 3723, 4335, 4764 |
| BstSLI | GKGCMC | 2 cut(s) | 138, 4366 |
| BstUI | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| BstV2I | GAAGAC | 5 cut(s) | 100, 1579, 1725, 3255, 3396 |
| BstX2I | RGATCY | 8 cut(s) | 745, 1414, 1492, 2954, 4075, 4339, 4655, 4795 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1434, 2243 |
| BstYI | RGATCY | 8 cut(s) | 745, 1414, 1492, 2954, 4075, 4339, 4655, 4795 |
| BstZ17I | GTATAC | 1 cut(s) | 1737 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3141 |
| BtgI | CCRYGG | 1 cut(s) | 3864 |
| BtgZI | GCGATG | 3 cut(s) | 1931, 2795, 2838 |
| BtsI | GCAGTG | 2 cut(s) | 576, 2011 |
| BtuMI | TCGCGA | 2 cut(s) | 146, 3098 |
| BveI | ACCTGC | 3 cut(s) | 685, 4456, 5500 |
| Cac8I | GCNNGC | 7 cut(s) | 1050, 2856, 3559, 4927, 4931, 5185, 5507 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1817 |
| CciI | TCATGA | 2 cut(s) | 1444, 4669 |
| CfoI | GCGC | 6 cut(s) | 532, 784, 894, 1372, 1490, 1773 |
| Cfr10I | RCCGGY | 1 cut(s) | 1048 |
| Cfr13I | GGNCC | 8 cut(s) | 1746, 2564, 2662, 3125, 3718, 4445, 5031, 5589 |
| CseI | GACGC | 2 cut(s) | 2990, 5255 |
| Csp6I | GTAC | 7 cut(s) | 243, 1324, 1555, 2868, 4011, 5002, 5561 |
| CviQI | GTAC | 7 cut(s) | 243, 1324, 1555, 2868, 4011, 5002, 5561 |
| DraI | TTTAAA | 3 cut(s) | 313, 819, 1998 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4873 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5139 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4873 |
| EaeI | YGGCCR | 7 cut(s) | 1046, 1252, 2187, 3031, 3057, 4923, 5036 |
| Eam1104I | CTCTTC | 4 cut(s) | 399, 798, 1308, 2136 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5139 |
| EarI | CTCTTC | 4 cut(s) | 399, 798, 1308, 2136 |
| EciI | GGCGGA | 1 cut(s) | 3232 |
| Ecl136II | GAGCTC | 3 cut(s) | 2524, 4126, 5623 |
| Eco130I | CCWWGG | 6 cut(s) | 900, 1249, 2544, 3864, 5469, 5585 |
| Eco24I | GRGCYC | 5 cut(s) | 304, 1464, 2526, 4128, 5625 |
| Eco32I | GATATC | 1 cut(s) | 3135 |
| Eco47I | GGWCC | 5 cut(s) | 1746, 3718, 4445, 5031, 5589 |
| Eco47III | AGCGCT | 1 cut(s) | 783 |
| Eco53kI | GAGCTC | 3 cut(s) | 2524, 4126, 5623 |
| Eco81I | CCTNAGG | 1 cut(s) | 3141 |
| Eco88I | CYCGRG | 1 cut(s) | 350 |
| EcoICRI | GAGCTC | 3 cut(s) | 2524, 4126, 5623 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3910 |
| EcoO109I | RGGNCCY | 2 cut(s) | 4445, 5589 |
| EcoRI | GAATTC | 1 cut(s) | 3955 |
| EcoRV | GATATC | 1 cut(s) | 3135 |
| EcoT14I | CCWWGG | 6 cut(s) | 900, 1249, 2544, 3864, 5469, 5585 |
| EcoT22I | ATGCAT | 6 cut(s) | 1021, 1333, 2197, 2348, 2369, 4623 |
| EcoT38I | GRGCYC | 5 cut(s) | 304, 1464, 2526, 4128, 5625 |
| ErhI | CCWWGG | 6 cut(s) | 900, 1249, 2544, 3864, 5469, 5585 |
| Esp3I | CGTCTC | 2 cut(s) | 351, 5238 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2528, 2560 |
| FaqI | GGGAC | 5 cut(s) | 523, 1901, 4441, 4458, 4861 |
| FauI | CCCGC | 3 cut(s) | 158, 5090, 5498 |
| FauNDI | CATATG | 1 cut(s) | 456 |
| FbaI | TGATCA | 3 cut(s) | 982, 5227, 5302 |
| FblI | GTMKAC | 3 cut(s) | 1166, 1736, 2104 |
| FriOI | GRGCYC | 5 cut(s) | 304, 1464, 2526, 4128, 5625 |
| FspI | TGCGCA | 3 cut(s) | 893, 1489, 1772 |
| GlaI | GCGC | 6 cut(s) | 531, 783, 893, 1371, 1489, 1772 |
| GsaI | CCCAGC | 1 cut(s) | 3285 |
| GsuI | CTGGAG | 4 cut(s) | 3465, 4864, 5262, 5271 |
| HaeII | RGCGCY | 2 cut(s) | 533, 785 |
| HapII | CCGG | 4 cut(s) | 533, 1049, 5035, 5482 |
| HgaI | GACGC | 2 cut(s) | 2990, 5255 |
| HhaI | GCGC | 6 cut(s) | 532, 784, 894, 1372, 1490, 1773 |
| Hin6I | GCGC | 6 cut(s) | 530, 782, 892, 1370, 1488, 1771 |
| HinP1I | GCGC | 6 cut(s) | 530, 782, 892, 1370, 1488, 1771 |
| HincII | GTYRAC | 3 cut(s) | 4232, 4271, 5317 |
| HindII | GTYRAC | 3 cut(s) | 4232, 4271, 5317 |
| HindIII | AAGCTT | 4 cut(s) | 373, 414, 4931, 5185 |
| HpaII | CCGG | 4 cut(s) | 533, 1049, 5035, 5482 |
| HphI | GGTGA | 9 cut(s) | 2225, 2901, 2947, 3659, 4061, 4226, 4364, 4691, 4990 |
| Hpy99I | CGWCG | 1 cut(s) | 146 |
| HpyCH4III | ACNGT | 9 cut(s) | 133, 1561, 1705, 1782, 2457, 3073, 4286, 5137, 5613 |
| HpyCH4IV | ACGT | 5 cut(s) | 3847, 4960, 5047, 5327, 5452 |
| HpySE526I | ACGT | 5 cut(s) | 3847, 4960, 5047, 5327, 5452 |
| HspAI | GCGC | 6 cut(s) | 530, 782, 892, 1370, 1488, 1771 |
| KroI | GCCGGC | 1 cut(s) | 1048 |
| KroNI | GCCGGC | 1 cut(s) | 1050 |
| Ksp22I | TGATCA | 3 cut(s) | 982, 5227, 5302 |
| LguI | GCTCTTC | 1 cut(s) | 2136 |
| LmnI | GCTCC | 7 cut(s) | 685, 1438, 1459, 2529, 2724, 3568, 5220 |
| MaeII | ACGT | 5 cut(s) | 3847, 4960, 5047, 5327, 5452 |
| MaeIII | GTNAC | 7 cut(s) | 1852, 2170, 4049, 4819, 4861, 5131, 5151 |
| MbiI | CCGCTC | 1 cut(s) | 13 |
| MfeI | CAATTG | 1 cut(s) | 4895 |
| MflI | RGATCY | 8 cut(s) | 745, 1414, 1492, 2954, 4075, 4339, 4655, 4795 |
| MlsI | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| MluNI | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| MmeI | TCCRAC | 6 cut(s) | 153, 1011, 1724, 2739, 3875, 4020 |
| Mox20I | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| Mph1103I | ATGCAT | 6 cut(s) | 1021, 1333, 2197, 2348, 2369, 4623 |
| MroNI | GCCGGC | 1 cut(s) | 1048 |
| MroXI | GAANNNNTTC | 3 cut(s) | 808, 2220, 5538 |
| MscI | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| MslI | CAYNNNNRTG | 7 cut(s) | 761, 2210, 2946, 3834, 4521, 4674, 5430 |
| Msp20I | TGGCCA | 5 cut(s) | 1254, 2189, 3033, 3059, 4925 |
| MspA1I | CMGCKG | 1 cut(s) | 2998 |
| MspI | CCGG | 4 cut(s) | 533, 1049, 5035, 5482 |
| MunI | CAATTG | 1 cut(s) | 4895 |
| Mva1269I | GAATGC | 2 cut(s) | 2348, 4834 |
| MvnI | CGCG | 4 cut(s) | 146, 1244, 1370, 3098 |
| NaeI | GCCGGC | 1 cut(s) | 1050 |
| NciI | CCSGG | 2 cut(s) | 534, 5035 |
| NcoI | CCATGG | 1 cut(s) | 3864 |
| NdeI | CATATG | 1 cut(s) | 456 |
| NgoMIV | GCCGGC | 1 cut(s) | 1048 |
| NlaIV | GGNNCC | 8 cut(s) | 657, 747, 1461, 3720, 4446, 4914, 5033, 5591 |
| NmuCI | GTSAC | 4 cut(s) | 4049, 4861, 5131, 5151 |
| NruI | TCGCGA | 2 cut(s) | 146, 3098 |
| NsbI | TGCGCA | 3 cut(s) | 893, 1489, 1772 |
| NsiI | ATGCAT | 6 cut(s) | 1021, 1333, 2197, 2348, 2369, 4623 |
| NspI | RCATGY | 2 cut(s) | 2423, 5496 |
| NspV | TTCGAA | 1 cut(s) | 3981 |
| OliI | CACNNNNGTG | 1 cut(s) | 2210 |
| PaeR7I | CTCGAG | 1 cut(s) | 350 |
| PagI | TCATGA | 2 cut(s) | 1444, 4669 |
| PciI | ACATGT | 1 cut(s) | 5492 |
| PciSI | GCTCTTC | 1 cut(s) | 2136 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 193 |
| PctI | GAATGC | 2 cut(s) | 2348, 4834 |
| PdiI | GCCGGC | 1 cut(s) | 1050 |
| PdmI | GAANNNNTTC | 3 cut(s) | 808, 2220, 5538 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1180, 1872, 4885 |
| PpuMI | RGGWCCY | 2 cut(s) | 4445, 5589 |
| PscI | ACATGT | 1 cut(s) | 5492 |
| PshAI | GACNNNNGTC | 3 cut(s) | 51, 3224, 5374 |
| PshBI | ATTAAT | 3 cut(s) | 1086, 1793, 2513 |
| PsiI | TTATAA | 2 cut(s) | 2648, 4947 |
| Psp124BI | GAGCTC | 3 cut(s) | 2526, 4128, 5625 |
| Psp1406I | AACGTT | 1 cut(s) | 5452 |
| Psp5II | RGGWCCY | 2 cut(s) | 4445, 5589 |
| PspFI | CCCAGC | 1 cut(s) | 3281 |
| PspN4I | GGNNCC | 8 cut(s) | 657, 747, 1461, 3720, 4446, 4914, 5033, 5591 |
| PspPI | GGNCC | 8 cut(s) | 1746, 2564, 2662, 3125, 3718, 4445, 5031, 5589 |
| PspPPI | RGGWCCY | 2 cut(s) | 4445, 5589 |
| PstI | CTGCAG | 1 cut(s) | 53 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1817 |
| PsuI | RGATCY | 8 cut(s) | 745, 1414, 1492, 2954, 4075, 4339, 4655, 4795 |
| PvuII | CAGCTG | 1 cut(s) | 2998 |
| RruI | TCGCGA | 2 cut(s) | 146, 3098 |
| RsaI | GTAC | 7 cut(s) | 244, 1325, 1556, 2869, 4012, 5003, 5562 |
| RsaNI | GTAC | 7 cut(s) | 243, 1324, 1555, 2868, 4011, 5002, 5561 |
| RseI | CAYNNNNRTG | 7 cut(s) | 761, 2210, 2946, 3834, 4521, 4674, 5430 |
| SacI | GAGCTC | 3 cut(s) | 2526, 4128, 5625 |
| SapI | GCTCTTC | 1 cut(s) | 2136 |
| Sau96I | GGNCC | 8 cut(s) | 1746, 2564, 2662, 3125, 3718, 4445, 5031, 5589 |
| SfcI | CTRYAG | 4 cut(s) | 49, 3723, 4335, 4764 |
| Sfr274I | CTCGAG | 1 cut(s) | 350 |
| SfuI | TTCGAA | 1 cut(s) | 3981 |
| SinI | GGWCC | 5 cut(s) | 1746, 3718, 4445, 5031, 5589 |
| SlaI | CTCGAG | 1 cut(s) | 350 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 761, 2210, 2946, 3834, 4521, 4674, 5430 |
| SmlI | CTYRAG | 6 cut(s) | 317, 350, 1288, 1421, 1592, 3177 |
| SmoI | CTYRAG | 6 cut(s) | 317, 350, 1288, 1421, 1592, 3177 |
| SsiI | CCGC | 7 cut(s) | 13, 81, 151, 1757, 3217, 5083, 5505 |
| SspI | AATATT | 4 cut(s) | 855, 883, 2739, 3823 |
| SstI | GAGCTC | 3 cut(s) | 2526, 4128, 5625 |
| StyI | CCWWGG | 6 cut(s) | 900, 1249, 2544, 3864, 5469, 5585 |
| TaaI | ACNGT | 9 cut(s) | 133, 1561, 1705, 1782, 2457, 3073, 4286, 5137, 5613 |
| TaiI | ACGT | 5 cut(s) | 3850, 4963, 5050, 5330, 5455 |
| TatI | WGTACW | 5 cut(s) | 242, 1323, 1554, 2867, 5560 |
| TseFI | GTSAC | 4 cut(s) | 4049, 4861, 5131, 5151 |
| Tsp45I | GTSAC | 4 cut(s) | 4049, 4861, 5131, 5151 |
| TspGWI | ACGGA | 6 cut(s) | 130, 155, 1492, 2852, 5044, 5398 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1180, 1872, 4885 |
| VneI | GTGCAC | 1 cut(s) | 134 |
| VpaK11BI | GGWCC | 5 cut(s) | 1746, 3718, 4445, 5031, 5589 |
| VspI | ATTAAT | 3 cut(s) | 1086, 1793, 2513 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3910 |
| XbaI | TCTAGA | 2 cut(s) | 2015, 4633 |
| XceI | RCATGY | 2 cut(s) | 2423, 5496 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1262, 3604, 4092 |
| XhoI | CTCGAG | 1 cut(s) | 350 |
| XmaJI | CCTAGG | 1 cut(s) | 5585 |
| XmiI | GTMKAC | 3 cut(s) | 1166, 1736, 2104 |
| XmnI | GAANNNNTTC | 3 cut(s) | 808, 2220, 5538 |
| Zsp2I | ATGCAT | 6 cut(s) | 1021, 1333, 2197, 2348, 2369, 4623 |