Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007449

Physical Location & Seq

Genomic Coordinates Reverse (-)

49511027 .. 49513101

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGCACCGCAGCATTTCTCCTCCGAGCTGTACGACGTCGTCCTGTCACAACAGCCATGGGGGCTGCAGCATTGGTCTCCCTCTCTGCCTACCGATCTTATGGTAGTGAAAGGTCCTCAAAATTGGCATCAGACCAAGAACAAGAAAAAAGGTCCCCAAAATTGGCAAGCTGGTTTAAACCTTTCAGGGTTACACAGGTTGAGGGTGGAGGCTCGGCGATCCAGGGGAATGAACCCTCTAGGCCGTGGTTCAAAACAACTATATTCATACGTGGCCATGGCAGCTCTCATACCACTGGCAATGGCGGTGGTTCTATCTCTTTGGACAGTGGAACTGAAGCCCTTGGTAACGGCTCTACTGATTTTGGAGAGAAATCCAAGATATTTGGTCTTGACTGTTATATTAAACACCATGGTCGGTTTAGTCTGCCTACTCCTGAATTAAACTTGCTATTCTGTCTACTGTTAGTATCTATTCAACGACTTTGTGCAGACCTTATCACTCTGCCTCTAATAGCTATTAATGCACTACTTACTCCAATAATGCTGATTCTTGGTTCAATGGTGGGGACTCTGGCTCCACTAGGGGCAATTTTGGCACAAATTTTAATGGTTCTGGCTCCAGCAGCAGCTCTAATGGCGGCTCTGGCTCTAGCAGTTCTTATGCCGGTTCTGGCTCCAGCACCTCGAGCAGTTCTTTTGAAGATTATGGCTGGAGCAATTCTTATGGTGTCTTTGGCTCTGGCTATAGCACTACTTAAGGCGTCTCAAGCTCCCACAGTTAAGACTGAAGGTTCTCGCTCCAGCAGTTCTTATGGTTGTTCTGAAGGTGTGGATGGCTCTGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

283

Amino Acids

29.49

Weight (kDa)

9.54

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67120 AT1G67120
fragaria_vesca	FvH4_6g34300
malus_domestica	MD05G1009600.v1.1
prunus_persica	Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1 Prupe.3G044200_v2.0.a1
pyrus_communis	pycom05g00490
rosa_chinensis	RchiOBHm_Chr2g0144641
rosa_laevigata	RLG00000016484 RLG00000020098
rosa_multiflora	Rmu_sc0000227.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101100
rosa_rugosa	Rorug02G0388300
rosa_samantha	Rh2AG440300 Rh2BG450700 Rh2CG427400 Rh2DG460700
rosa_wichuraiana	Rw2G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	460
AciI	CCGC	3 cut(s)	9, 306, 641
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	603
AcuI	CTGAAG	3 cut(s)	357, 810, 846
AcyI	GRCGYC	2 cut(s)	37, 764
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	253, 479, 561, 703
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	6 cut(s)	29, 171, 285, 518, 632, 773
AluI	AGCT	6 cut(s)	29, 171, 285, 518, 632, 773
Alw26I	GTCTC	2 cut(s)	82, 771
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	2 cut(s)	242, 274
ApeKI	GCWGC	6 cut(s)	11, 65, 68, 282, 626, 629
ApoI	RAATTY	1 cut(s)	603
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	114, 153
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	2 cut(s)	114, 153
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	5
BbvI	GCAGC	6 cut(s)	23, 52, 80, 294, 638, 641
BccI	CCATC	1 cut(s)	830
BceAI	ACGGC	2 cut(s)	229, 367
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	82, 771
BfaI	CTAG	3 cut(s)	240, 584, 653
BfmI	CTRYAG	2 cut(s)	66, 747
BfrI	CTTAAG	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	7 cut(s)	12, 66, 69, 283, 627, 630, 642
BlsI	GCNGC	7 cut(s)	13, 67, 70, 284, 628, 631, 643
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	114, 153
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	2 cut(s)	114, 153
BmiI	GGNNCC	5 cut(s)	7, 155, 579, 621, 678
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	137
BpmI	CTGGAG	4 cut(s)	606, 663, 735, 787
BpuEI	CTTGAG	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	37, 764
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	6 cut(s)	57, 223, 245, 277, 343, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	6 cut(s)	57, 223, 245, 277, 343, 412
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	6 cut(s)	23, 52, 80, 294, 638, 641
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	244, 276
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	668
BslFI	GGGAC	2 cut(s)	139, 583
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	82, 771
BsmBI	CGTCTC	1 cut(s)	771
BsmFI	GGGAC	2 cut(s)	139, 583
BsnI	GGCC	2 cut(s)	244, 276
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	95, 219
Bsp19I	CCATGG	3 cut(s)	57, 277, 412
BspACI	CCGC	3 cut(s)	9, 306, 641
BspANI	GGCC	2 cut(s)	244, 276
BspLI	GGNNCC	5 cut(s)	7, 155, 579, 621, 678
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	6 cut(s)	57, 223, 245, 277, 343, 412
BssMI	GATC	2 cut(s)	95, 219
BssNI	GRCGYC	2 cut(s)	37, 764
BssT1I	CCWWGG	4 cut(s)	57, 277, 343, 412
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	329, 398, 465, 781
BstACI	GRCGYC	2 cut(s)	37, 764
BstAFI	CTTAAG	1 cut(s)	758
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	169
BstDSI	CCRYGG	4 cut(s)	57, 245, 277, 412
BstF5I	GGATG	1 cut(s)	841
BstKTI	GATC	2 cut(s)	98, 222
BstMAI	GTCTC	2 cut(s)	82, 771
BstMBI	GATC	2 cut(s)	95, 219
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 282, 524, 596, 626, 638, 647, 689, 770
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	2 cut(s)	66, 747
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	6 cut(s)	23, 52, 80, 294, 638, 641
BsuRI	GGCC	2 cut(s)	244, 276
BtgI	CCRYGG	4 cut(s)	57, 245, 277, 412
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	294, 334
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	114, 153
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	3 cut(s)	58, 278, 413
CviQI	GTAC	1 cut(s)	32
DpnI	GATC	2 cut(s)	97, 221
DpnII	GATC	2 cut(s)	95, 219
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	274
Eco130I	CCWWGG	4 cut(s)	57, 277, 343, 412
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	114, 153
Eco57I	CTGAAG	3 cut(s)	357, 810, 846
Eco88I	CYCGRG	1 cut(s)	687
EcoO109I	RGGNCCY	2 cut(s)	114, 153
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	4 cut(s)	57, 277, 343, 412
ErhI	CCWWGG	4 cut(s)	57, 277, 343, 412
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	3 cut(s)	61, 281, 416
FaqI	GGGAC	2 cut(s)	139, 583
FatI	CATG	3 cut(s)	57, 277, 412
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	7 cut(s)	12, 66, 69, 283, 627, 630, 642
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	7 cut(s)	12, 66, 69, 283, 627, 630, 642
FspBI	CTAG	3 cut(s)	240, 584, 653
GluI	GCNGC	7 cut(s)	12, 66, 69, 283, 627, 630, 642
GsuI	CTGGAG	4 cut(s)	606, 663, 735, 787
HaeIII	GGCC	2 cut(s)	244, 276
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	1 cut(s)	753
Hin1I	GRCGYC	2 cut(s)	37, 764
Hin1II	CATG	3 cut(s)	61, 281, 416
HinfI	GANTC	3 cut(s)	550, 571, 845
HpaII	CCGG	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	4 cut(s)	26, 133, 826, 844
Hpy188III	TCNNGA	2 cut(s)	392, 437
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	2 cut(s)	39, 42
HpyAV	CCTTC	2 cut(s)	785, 821
HpyCH4III	ACNGT	4 cut(s)	329, 398, 465, 781
HpyCH4IV	ACGT	2 cut(s)	37, 271
HpyCH4V	TGCA	3 cut(s)	68, 491, 527
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 282, 524, 596, 626, 638, 647, 689, 770
HpySE526I	ACGT	2 cut(s)	37, 271
Hsp92I	GRCGYC	2 cut(s)	37, 764
Hsp92II	CATG	3 cut(s)	61, 281, 416
Kzo9I	GATC	2 cut(s)	95, 219
LmnI	GCTCC	6 cut(s)	583, 625, 682, 716, 778, 806
Lsp1109I	GCAGC	6 cut(s)	23, 52, 80, 294, 638, 641
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	3 cut(s)	240, 584, 653
MaeII	ACGT	2 cut(s)	37, 271
MaeIII	GTNAC	3 cut(s)	46, 190, 347
MalI	GATC	2 cut(s)	97, 221
MboI	GATC	2 cut(s)	95, 219
MboII	GAAGA	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	122, 161, 440, 591, 603, 720
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	565, 839
MnlI	CCTC	8 cut(s)	32, 92, 127, 196, 203, 247, 519, 696
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	8 cut(s)	177, 405, 443, 522, 608, 759, 783, 850
Msp20I	TGGCCA	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	224
MssI	GTTTAAAC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	9 cut(s)	62, 282, 524, 596, 626, 638, 647, 689, 770
NcoI	CCATGG	3 cut(s)	57, 277, 412
NdeII	GATC	2 cut(s)	95, 219
NlaIII	CATG	3 cut(s)	61, 281, 416
NlaIV	GGNNCC	5 cut(s)	7, 155, 579, 621, 678
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	550
PflFI	GACNNNGTC	1 cut(s)	39
PkrI	GCNGC	7 cut(s)	13, 67, 70, 284, 628, 631, 643
PleI	GAGTC	2 cut(s)	565, 839
PmeI	GTTTAAAC	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	565, 839
Ppu21I	YACGTR	1 cut(s)	272
PpuMI	RGGWCCY	2 cut(s)	114, 153
PshBI	ATTAAT	1 cut(s)	522
Psp5II	RGGWCCY	2 cut(s)	114, 153
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	5 cut(s)	7, 155, 579, 621, 678
PspPI	GGNCC	2 cut(s)	114, 153
PspPPI	RGGWCCY	2 cut(s)	114, 153
PspXI	VCTCGAGB	1 cut(s)	687
PstI	CTGCAG	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	39
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	8 cut(s)	177, 405, 443, 522, 608, 759, 783, 850
SatI	GCNGC	7 cut(s)	12, 66, 69, 283, 627, 630, 642
Sau3AI	GATC	2 cut(s)	95, 219
Sau96I	GGNCC	2 cut(s)	114, 153
SchI	GAGTC	2 cut(s)	565, 839
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	2 cut(s)	66, 747
Sfr274I	CTCGAG	1 cut(s)	687
SinI	GGWCC	2 cut(s)	114, 153
SlaI	CTCGAG	1 cut(s)	687
SmlI	CTYRAG	3 cut(s)	687, 758, 768
SmoI	CTYRAG	3 cut(s)	687, 758, 768
Sse9I	AATT	6 cut(s)	122, 161, 440, 591, 603, 720
SsiI	CCGC	3 cut(s)	9, 306, 641
SspMI	CTAG	3 cut(s)	240, 584, 653
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	4 cut(s)	57, 277, 343, 412
TaaI	ACNGT	4 cut(s)	329, 398, 465, 781
TaiI	ACGT	2 cut(s)	40, 274
TaqI	TCGA	1 cut(s)	688
TasI	AATT	6 cut(s)	122, 161, 440, 591, 603, 720
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	8 cut(s)	177, 405, 443, 522, 608, 759, 783, 850
Tru9I	TTAA	8 cut(s)	177, 405, 443, 522, 608, 759, 783, 850
TscAI	CASTG	2 cut(s)	301, 334
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	6 cut(s)	11, 65, 68, 282, 626, 629
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	246, 256
TspRI	CASTG	2 cut(s)	301, 334
Tth111I	GACNNNGTC	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	114, 153
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	3 cut(s)	240, 584, 653
ZraI	GACGTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.