RLG00000017737

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0024831
Physical Location & Seq
Forward (+)
20581297 .. 20581853
557 bp
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UTR
Exon/CDS
Intron
RLM00000017737

Sequence Viewer

Length: 411 bp
ATGCACACTCACAGCGGAGCTTCAGAAGTCATACTTGTTGCTGAAGGCAAAGTTATAGCTGGGTTCATCGCCTCAGATAACAAAGCTTATGTAAAAAATTTGAAGAAAGGTGATATTATGGTTTTACCTCAAGGTGTGCTTCACTTCCAAGTAAATGCAGGTGATACTCTGGCCCTTGTGTTTGCTATCTTCAGTAGTGACGACCCAGGTGTGCAGGTTTTGGAGACTGCACTGTTTCAAAATGATTTACGTACTAAATTGATAGCACAGACTACTCTCCTTCACACTGCTGAGATTAAGAAACCTACGGGTCTTCTCGGCGGCACAAAGCATCTCAGGCACTATGGAACTGGAAACCTTCCTCTGCTAACAGAAACTGAATGGCAAAAGGTAACTAAACTAGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

137

Amino Acids

14.69

Weight (kDa)

8.03

Isoelectric Point (pI)

21.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 1 - 94 5e-21 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024831)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0109421
rosa_laevigata RLG00000017737
rosa_roxburghii Rroxscaffold_2G00134250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 2 cut(s) 149, 205
AciI CCGC 2 cut(s) 15, 321
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 3 cut(s) 6, 63, 175
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 2 cut(s) 103, 239
AhlI ACTAGT 1 cut(s) 400
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 20, 59, 86
AluI AGCT 3 cut(s) 20, 59, 86
Alw26I GTCTC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 122, 173
BbsI GAAGAC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 1 cut(s) 401
BfuAI ACCTGC 2 cut(s) 149, 205
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 87, 282, 349
BseNI ACTGG 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 2 cut(s) 213, 233
BshFI GGCC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 173
BspACI CCGC 2 cut(s) 15, 321
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 86, 283, 348
BspMI ACCTGC 2 cut(s) 149, 205
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 73, 291, 335
BstMAI GTCTC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 173
BtgZI GCGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 230, 285
BveI ACCTGC 2 cut(s) 149, 205
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 252
CviJI RGCY 5 cut(s) 20, 59, 86, 173, 407
CviKI_1 RGCY 5 cut(s) 20, 59, 86, 173, 407
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 73, 291, 335
Eco105I TACGTA 1 cut(s) 251
Eco57I CTGAAG 3 cut(s) 6, 63, 175
EcoRII CCWGG 1 cut(s) 205
FaiI YATR 5 cut(s) 32, 56, 90, 119, 345
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 123, 155
Fnu4HI GCNGC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 1 cut(s) 401
GluI GCNGC 1 cut(s) 322
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 84
HphI GGTGA 2 cut(s) 122, 173
Hpy188I TCNGA 2 cut(s) 25, 76
HpyAV CCTTC 3 cut(s) 38, 290, 368
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 4, 158, 214, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 3 cut(s) 73, 291, 335
HpySE526I ACGT 1 cut(s) 250
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 8 cut(s) 45, 144, 155, 192, 200, 219, 322, 336
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 197, 391
MboII GAAGA 3 cut(s) 115, 181, 305
MluCI AATT 2 cut(s) 97, 257
MnlI CCTC 3 cut(s) 82, 138, 372
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 337
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SnaBI TACGTA 1 cut(s) 251
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 2 cut(s) 97, 257
SsiI CCGC 2 cut(s) 15, 321
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 253
TasI AATT 2 cut(s) 97, 257
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 237, 292
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 2 cut(s) 237, 292
XapI RAATTY 1 cut(s) 97
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.