RLG00000018926

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015302
Physical Location & Seq
Reverse (-)
42920006 .. 42921703
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018926

Sequence Viewer

Length: 654 bp
ATGGCTGCCGGGCGGGGTGTCTGCCTACTGCAGGTGATGGTCTTATCAAGTGTGCCTGGTCGATGTGGAGATAGGGAGCGGTTTTTGGGGCGAGATCACGGAGCCCACCCTCTCCAGGCGGCGTCGGTGGTGACAGATCTAGACATGGGAGAAGCAGTGATGTGGAATCTCGACACCGGTATGGGATACAATCTCTACTGGGTTAGGCAGTTGCCGGGTTATGAAGGAGGCCTCGTGTCTATGTCCCACAAATCGAAGTGGGAGTGTTTGTTACAAGCGTCAGACGATGGCCGTAGGGGTGTTGACGATGGAAGAACGGCAGCGGTGGAAAACCAGGCGAGGATCCGGAATTCAATGAAGGTTGTTGTGGAGAATTTGACAGGAACTCTCTTCCATGTCCAAGTCGGCAACGATGCCACAGTTGCTGATCTCAAGAAGGAAATCGAAACCCAGCAGAAGCTCCCTTATGACCGTCTCATCTTGATTCTTCATGCTGATCATCATCGTAGCTATACCATCAACGACAATGGCGATGGCGTTTCGCTTATTGATTATGGAGTCCAAGATGGCTCCCACATCTATATCTTCTTCAACCCCCTTGATGACCACGGCTCCTCCTCCGCTACTCAGCGTTTCTTTTTTGGGGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

218

Amino Acids

24.0

Weight (kDa)

5.52

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015302)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32360
malus_domestica MD07G1098300.v1.1
prunus_persica Prupe.2G122300_v2.0.a1 Prupe.3G131300_v2.0.a1
pyrus_communis pycom12652g00060
rosa_chinensis RchiOBHm_Chr2g0126901
rosa_laevigata RLG00000018926
rosa_multiflora Rmu_co8178202.1_g000001 Rmu_sc0000007.1_g000028
rosa_roxburghii Rroxscaffold_2G00116940
rosa_rugosa Rorug02G0270000
rosa_samantha Rh2AG322300 Rh2BG330500 Rh2CG310400 Rh2DG349800
rosa_wichuraiana Rw2G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 648
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 5 cut(s) 13, 79, 119, 323, 621
AclWI GGATC 2 cut(s) 337, 350
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 349, 373
AcyI GRCGYC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 31, 115
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 354, 592
AjnI CCWGG 3 cut(s) 55, 114, 333
AluBI AGCT 2 cut(s) 460, 510
AluI AGCT 2 cut(s) 460, 510
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 2 cut(s) 337, 350
AlwNI CAGNNNCTG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 2 cut(s) 229, 289
ApeKI GCWGC 2 cut(s) 5, 320
ApoI RAATTY 2 cut(s) 349, 373
AsiGI ACCGGT 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 10, 216
AsuHPI GGTGA 2 cut(s) 46, 142
BamHI GGATCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 106
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 1 cut(s) 332
BccI CCATC 6 cut(s) 31, 281, 302, 524, 527, 560
BceAI ACGGC 3 cut(s) 276, 333, 625
BciT130I CCWGG 3 cut(s) 57, 116, 335
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 2 cut(s) 10, 216
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 179
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 6, 120, 321
BlsI GCNGC 3 cut(s) 7, 121, 322
Bme1390I CCNGG 5 cut(s) 10, 57, 116, 216, 335
BmiI GGNNCC 4 cut(s) 103, 344, 571, 613
BmrFI CCNGG 5 cut(s) 10, 57, 116, 216, 335
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 2 cut(s) 10, 216
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 607
BsaWI WCCGGW 2 cut(s) 176, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 115
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 3 cut(s) 57, 116, 335
BseDI CCNNGG 1 cut(s) 607
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 31, 115
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 604, 607
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 450
BshFI GGCC 2 cut(s) 231, 291
BshTI ACCGGT 1 cut(s) 176
BsiSI CCGG 4 cut(s) 9, 177, 215, 346
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 31, 115
BsmAI GTCTC 1 cut(s) 479
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 2 cut(s) 231, 291
Bsp1286I GDGCHC 1 cut(s) 106
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 5 cut(s) 94, 136, 342, 427, 496
BspACI CCGC 5 cut(s) 13, 79, 119, 323, 621
BspANI GGCC 2 cut(s) 231, 291
BspCNI CTCAG 1 cut(s) 640
BspEI TCCGGA 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 103, 344, 571, 613
BspMAI CTGCAG 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 337, 350
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 5 cut(s) 94, 136, 342, 427, 496
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 57, 116, 335
Bst4CI ACNGT 2 cut(s) 421, 473
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 607
BstENI CCTNNNNNAGG 1 cut(s) 29
BstKTI GATC 5 cut(s) 97, 139, 345, 430, 499
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 5 cut(s) 94, 136, 342, 427, 496
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 3 cut(s) 57, 116, 335
BstSCI CCNGG 5 cut(s) 8, 55, 114, 214, 333
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 136, 342
BstYI RGATCY 2 cut(s) 136, 342
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 231, 291
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 2 cut(s) 111, 267
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 3 cut(s) 145, 395, 491
CviJI RGCY 8 cut(s) 5, 104, 231, 291, 460, 510, 570, 612
CviKI_1 RGCY 8 cut(s) 5, 104, 231, 291, 460, 510, 570, 612
DdeI CTNAG 1 cut(s) 627
DpnI GATC 5 cut(s) 96, 138, 344, 429, 498
DpnII GATC 5 cut(s) 94, 136, 342, 427, 496
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 55, 114, 333
EcoT38I GRGCYC 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 3 cut(s) 148, 398, 494
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 144, 394, 490
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 3 cut(s) 6, 120, 321
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 6, 120, 321
FspBI CTAG 1 cut(s) 140
GluI GCNGC 3 cut(s) 6, 120, 321
GsaI CCCAGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 2 cut(s) 231, 291
HapII CCGG 4 cut(s) 9, 177, 215, 346
HgaI GACGC 2 cut(s) 111, 267
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 3 cut(s) 148, 398, 494
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 166, 484, 558
HpaII CCGG 4 cut(s) 9, 177, 215, 346
HphI GGTGA 2 cut(s) 46, 142
Hpy166II GTNNAC 2 cut(s) 304, 649
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 140, 170, 346, 433, 481
Hpy8I GTNNAC 2 cut(s) 304, 649
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 218, 352, 430
HpyCH4III ACNGT 2 cut(s) 421, 473
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 627
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 148, 398, 494
Kpn2I TCCGGA 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 5 cut(s) 94, 136, 342, 427, 496
LmnI GCTCC 5 cut(s) 76, 101, 465, 575, 617
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 130, 270
MalI GATC 5 cut(s) 96, 138, 344, 429, 498
MbiI CCGCTC 1 cut(s) 79
MboI GATC 5 cut(s) 94, 136, 342, 427, 496
MboII GAAGA 5 cut(s) 324, 382, 479, 577, 580
MflI RGATCY 2 cut(s) 136, 342
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 349, 373
MlyI GAGTC 1 cut(s) 567
MnlI CCTC 6 cut(s) 120, 221, 242, 333, 625, 628
MroI TCCGGA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 9, 177, 215, 346
MspR9I CCNGG 5 cut(s) 10, 57, 116, 216, 335
MvaI CCWGG 3 cut(s) 57, 116, 335
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 2 cut(s) 10, 216
NdeII GATC 5 cut(s) 94, 136, 342, 427, 496
NlaIII CATG 3 cut(s) 148, 398, 494
NlaIV GGNNCC 4 cut(s) 103, 344, 571, 613
NmuCI GTSAC 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PfeI GAWTC 2 cut(s) 166, 484
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 3 cut(s) 7, 121, 322
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Psp6I CCWGG 3 cut(s) 55, 114, 333
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 3 cut(s) 55, 114, 333
PspN4I GGNNCC 4 cut(s) 103, 344, 571, 613
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 136, 342
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 3 cut(s) 6, 120, 321
Sau3AI GATC 5 cut(s) 94, 136, 342, 427, 496
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 5 cut(s) 10, 57, 116, 216, 335
SduI GDGCHC 1 cut(s) 106
SetI ASST 4 cut(s) 36, 363, 462, 512
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 2 cut(s) 349, 373
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 5 cut(s) 13, 79, 119, 323, 621
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 5 cut(s) 8, 55, 114, 214, 333
TaaI ACNGT 2 cut(s) 421, 473
TaqI TCGA 4 cut(s) 61, 171, 254, 444
TasI AATT 2 cut(s) 349, 373
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 166, 484
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 5, 320
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 237, 371, 479
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 162
XagI CCTNNNNNAGG 1 cut(s) 29
XapI RAATTY 2 cut(s) 349, 373
XbaI TCTAGA 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.