Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Forward (+)

28547587 .. 28559055

Gene Structure 11469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAAAGAATCATACATATCAACTCCTTCACTGAATTTCAAATTTTAAAACCAGGATCATCCACATGTAATAAGTGGCTATGGCTGTTAAATTCTTTGGATAGGTTCTTTGTTCACCGTGGGGATAATAAGATACAATACTTTGGTGTTAGTTGGCGAAGTCACTCTGTAGATGAAAGTCAAGAGTTACCATGCTTCTGTGATGATGAGAATTTTCGAATGATACTCACATGGATCCAAAATGCAGCAAGGTGTAATGTTGAAAAACTTGTTATTGAGATCAGTTCTCCGCCAGAATATGTGACAACGATGTCTATGACGTACATATTTCTTTGTGCATCTTTGAGGTCTTTAGTGCTGAAAATGTTTTGTACAATTCATGAAGCACCATCCTTTGCTGTTTCTTCTAATCTCAAATACTTGATGTTAAAAAATGTTGGTATTAATGATGAGGGGTTTTTCAAATGGATATCACGTTGCTGCAGATTCATTGAGGAATTAGTTCTCGAAGAAGTTTGTGGGATAAACACTATCACCATTGAGAGCTCAACCTTGAAAAGATTTGGTTTTTATTTTCCAGTTCATATCTGCCGTCTTATCATGTCATGTGAGACACTTGAAGTCATATTCATTGACTGGAGATTTGATGAACATAGTAACATATTGTTAAATACTTTTGCTCCCAATCTTAGAAAGTTGATGTGGTACGGGAATGTGATGAATCAGCGAAACCTGGGAAAATTAGAATGTATAGAACAAGTTACACTTGATCTGGAGCCTGAAGTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

263

Amino Acids

30.85

Weight (kDa)

5.59

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	67 - 200	8.2e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	77 - 190	2.9e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	786
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	3 cut(s)	64, 229, 242
AcsI	RAATTY	4 cut(s)	35, 42, 91, 211
AfaI	GTAC	3 cut(s)	323, 373, 707
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	41, 263, 463, 556, 620
AjnI	CCWGG	2 cut(s)	52, 732
AluBI	AGCT	1 cut(s)	546
AluI	AGCT	1 cut(s)	546
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	3 cut(s)	64, 229, 242
ApeKI	GCWGC	2 cut(s)	245, 480
ApoI	RAATTY	4 cut(s)	35, 42, 91, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	107, 526
AsuII	TTCGAA	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	257, 467
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	54, 734
BcoDI	GTCTC	1 cut(s)	605
BfmI	CTRYAG	2 cut(s)	168, 481
BisI	GCNGC	2 cut(s)	246, 481
BlsI	GCNGC	2 cut(s)	247, 482
Bme1390I	CCNGG	2 cut(s)	54, 734
BmiI	GGNNCC	2 cut(s)	236, 777
BmrFI	CCNGG	2 cut(s)	54, 734
BmsI	GCATC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	658
Bpu14I	TTCGAA	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	118, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bse1I	ACTGG	2 cut(s)	578, 641
BseBI	CCWGG	2 cut(s)	54, 734
BseDI	CCNNGG	2 cut(s)	118, 733
BseGI	GGATG	2 cut(s)	59, 389
BseNI	ACTGG	2 cut(s)	578, 641
BseXI	GCAGC	2 cut(s)	257, 467
BsiHKAI	GWGCWC	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	56, 234, 279, 769
BspACI	CCGC	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	236, 777
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	3 cut(s)	64, 229, 242
BspT104I	TTCGAA	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	578, 641
BssECI	CCNNGG	2 cut(s)	118, 733
BssMI	GATC	4 cut(s)	56, 234, 279, 769
Bst2UI	CCWGG	2 cut(s)	54, 734
Bst4CI	ACNGT	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	689
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	59, 389
BstKTI	GATC	4 cut(s)	59, 237, 282, 772
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	4 cut(s)	56, 234, 279, 769
BstNI	CCWGG	2 cut(s)	54, 734
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	52, 732
BstSFI	CTRYAG	2 cut(s)	168, 481
BstV1I	GCAGC	2 cut(s)	257, 467
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	59, 389
BtsIMutI	CAGTG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	322, 372, 706
CviAII	CATG	6 cut(s)	66, 192, 231, 380, 601, 606
CviJI	RGCY	4 cut(s)	79, 85, 546, 778
CviKI_1	RGCY	4 cut(s)	79, 85, 546, 778
CviQI	GTAC	3 cut(s)	322, 372, 706
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	4 cut(s)	58, 236, 281, 771
DpnII	GATC	4 cut(s)	56, 234, 279, 769
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	52, 732
EcoRV	GATATC	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	548
FaeI	CATG	6 cut(s)	69, 195, 234, 383, 604, 609
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	6 cut(s)	65, 191, 230, 379, 600, 605
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	2 cut(s)	246, 481
FokI	GGATG	2 cut(s)	46, 376
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	246, 481
GluI	GCNGC	2 cut(s)	246, 481
GsuI	CTGGAG	1 cut(s)	658
Hin1II	CATG	6 cut(s)	69, 195, 234, 383, 604, 609
HinfI	GANTC	3 cut(s)	9, 486, 721
HphI	GGTGA	2 cut(s)	107, 526
Hpy166II	GTNNAC	2 cut(s)	115, 787
Hpy188III	TCNNGA	4 cut(s)	182, 380, 506, 773
Hpy8I	GTNNAC	2 cut(s)	115, 787
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	320, 475
HpyCH4V	TGCA	4 cut(s)	4, 245, 338, 483
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	2 cut(s)	320, 475
Hsp92II	CATG	6 cut(s)	69, 195, 234, 383, 604, 609
Kzo9I	GATC	4 cut(s)	56, 234, 279, 769
LmnI	GCTCC	2 cut(s)	685, 775
LpnPI	CCDG	8 cut(s)	39, 66, 306, 591, 622, 719, 746, 758
Lsp1109I	GCAGC	2 cut(s)	257, 467
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	2 cut(s)	320, 475
MaeIII	GTNAC	5 cut(s)	161, 186, 301, 656, 760
MalI	GATC	4 cut(s)	58, 236, 281, 771
MboI	GATC	4 cut(s)	56, 234, 279, 769
MboII	GAAGA	2 cut(s)	396, 521
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	7 cut(s)	35, 42, 91, 211, 375, 497, 740
MnlI	CCTC	3 cut(s)	339, 445, 487
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	5 cut(s)	47, 89, 428, 444, 668
MslI	CAYNNNNRTG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	54, 734
MvaI	CCWGG	2 cut(s)	54, 734
NdeII	GATC	4 cut(s)	56, 234, 279, 769
NlaIII	CATG	6 cut(s)	69, 195, 234, 383, 604, 609
NlaIV	GGNNCC	2 cut(s)	236, 777
NmuCI	GTSAC	2 cut(s)	161, 301
NspI	RCATGY	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	217
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	9, 486, 721
PkrI	GCNGC	2 cut(s)	247, 482
PscI	ACATGT	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	52, 732
PspGI	CCWGG	2 cut(s)	52, 732
PspN4I	GGNNCC	2 cut(s)	236, 777
PstI	CTGCAG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	3 cut(s)	323, 373, 707
RsaNI	GTAC	3 cut(s)	322, 372, 706
RseI	CAYNNNNRTG	1 cut(s)	64
SacI	GAGCTC	1 cut(s)	548
SaqAI	TTAA	5 cut(s)	47, 89, 428, 444, 668
SatI	GCNGC	2 cut(s)	246, 481
Sau3AI	GATC	4 cut(s)	56, 234, 279, 769
ScrFI	CCNGG	2 cut(s)	54, 734
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	8 cut(s)	107, 254, 323, 350, 478, 548, 554, 735
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	2 cut(s)	168, 481
SfuI	TTCGAA	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	7 cut(s)	35, 42, 91, 211, 375, 497, 740
SsiI	CCGC	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	52, 732
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	2 cut(s)	323, 478
TaqI	TCGA	2 cut(s)	217, 507
TasI	AATT	7 cut(s)	35, 42, 91, 211, 375, 497, 740
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	3 cut(s)	9, 486, 721
Tru1I	TTAA	5 cut(s)	47, 89, 428, 444, 668
Tru9I	TTAA	5 cut(s)	47, 89, 428, 444, 668
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	161, 301
TseI	GCWGC	2 cut(s)	245, 480
Tsp45I	GTSAC	2 cut(s)	161, 301
TspDTI	ATGAA	8 cut(s)	189, 368, 396, 478, 572, 619, 663, 734
TspRI	CASTG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	4 cut(s)	35, 42, 91, 211
XceI	RCATGY	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	786
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.