Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Forward (+)

28858899 .. 28859669

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1239100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGGGTAATTATTTCTTCACTGGGAAACAAATTTAGCATAGACGTGCATGTCAAAGAACCAGTTGTTGAAATCAAAAGGAAGATAGAACAAGTGTTGGGTGTCCCTGTGGATTCCCAAACCCTTGCAGTTTGTGGATGGGAGTTAATAGATGGATTAGACATGGAAGATTACCCAATTATCACTGAGGGTACTACAATTGACCTCACCATCAAATGGACGGGATCCGGAACTCCGTTAAATTTACACCGTTCTAGTAGTAAAATTCAGATTACCATCAAGTTTTCAGCAAGGCAGCTTCCCATGGAAGTTGACACATCCGAAACAGTACGTAGCCTTAAAGAAAAAATACACATCATGGACGGTACCCCCATCAAGAGGATGTCGCTCTTCTTCTGTGGAGCTGAGTTGGACGAAGATTTTCGTAATTTAAGCGCGTACGGGATACATGCATTTTCGGAGATCGTTGTGTTCCAAAAGACTATGAATCGTCTAAGAAATGAGCCGGCAGCAAGAACGCTGAGTGTAGTGGTACAAACATCGTCGAGTTTACTCAATGCGACAACGATTCCATTGGAAGTGAAGGACTCGAGAACGGTTAATGAGTTGAGGCAATTTCTTTTGAGCAGGAAAATTCTCCCAGCGGATGATTATTTGTTTATACACAAGCAGAGGATCATGCGTGACAATTGCAGCCTCAGATGGCATGGTGTTGGTGATGGAGATCTCCTATATGTATTTAAAGGGACTGTTTGTCACAGCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

257

Amino Acids

28.91

Weight (kDa)

7.05

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	9 - 72	4e-08	Ubiquitin family
ubiquitin	PF00240	91 - 160	1e-11	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	2 cut(s)	644, 762
AclWI	GGATC	3 cut(s)	219, 232, 683
AcsI	RAATTY	4 cut(s)	32, 241, 264, 633
AfaI	GTAC	5 cut(s)	193, 330, 367, 440, 534
AfiI	CCNNNNNNNGG	2 cut(s)	216, 378
AgsI	TTSAA	1 cut(s)	71
AhdI	GACNNNNNGTC	1 cut(s)	753
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	2 cut(s)	298, 404
AluI	AGCT	2 cut(s)	298, 404
AlwI	GGATC	3 cut(s)	219, 232, 683
Ama87I	CYCGRG	1 cut(s)	589
Aor13HI	TCCGGA	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	295, 509, 693
ApoI	RAATTY	4 cut(s)	32, 241, 264, 633
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	199, 728
AvaI	CYCGRG	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	307, 521, 705
BccI	CCATC	7 cut(s)	132, 146, 218, 284, 380, 696, 713
BciVI	GTATCC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	438
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	3 cut(s)	296, 510, 694
BlsI	GCNGC	3 cut(s)	297, 511, 695
BmeRI	GACNNNNNGTC	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	589
BmgBI	CACGTC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	226, 367
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	332
BsaBI	GATNNNNATC	2 cut(s)	275, 723
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 378
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	27, 62
Bse8I	GATNNNNATC	2 cut(s)	275, 723
BseAI	TCCGGA	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	4 cut(s)	143, 317, 387, 652
BseJI	GATNNNNATC	2 cut(s)	275, 723
BseLI	CCNNNNNNNGG	2 cut(s)	216, 378
BseMII	CTCAG	4 cut(s)	177, 396, 512, 712
BseNI	ACTGG	2 cut(s)	27, 62
BseXI	GCAGC	3 cut(s)	307, 521, 705
BseYI	CCCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	228, 506
BsiWI	CGTACG	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	89, 760
BslI	CCNNNNNNNGG	2 cut(s)	216, 378
BsmFI	GGGAC	2 cut(s)	89, 760
BsoBI	CYCGRG	1 cut(s)	589
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	224, 462, 675, 724
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	644, 762
BspCNI	CTCAG	4 cut(s)	178, 397, 513, 711
BspEI	TCCGGA	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	226, 367
BspPI	GGATC	3 cut(s)	219, 232, 683
BspQI	GCTCTTC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	27, 62
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	224, 462, 675, 724
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	251, 328, 365, 598, 751
Bst6I	CTCTTC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	5 cut(s)	186, 405, 494, 521, 698
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	4 cut(s)	143, 317, 387, 652
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	4 cut(s)	227, 465, 678, 727
BstMBI	GATC	4 cut(s)	224, 462, 675, 724
BstNSI	RCATGY	2 cut(s)	53, 452
BstSNI	TACGTA	1 cut(s)	332
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	307, 521, 705
BstX2I	RGATCY	2 cut(s)	224, 724
BstYI	RGATCY	2 cut(s)	224, 724
BsuI	GTATCC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	143, 317, 387, 652
BtsIMutI	CAGTG	2 cut(s)	20, 183
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	505
Csp6I	GTAC	5 cut(s)	192, 329, 366, 439, 533
CviAII	CATG	7 cut(s)	50, 163, 304, 358, 449, 679, 707
CviJI	RGCY	5 cut(s)	298, 336, 404, 505, 696
CviKI_1	RGCY	5 cut(s)	298, 336, 404, 505, 696
CviQI	GTAC	5 cut(s)	192, 329, 366, 439, 533
DdeI	CTNAG	5 cut(s)	186, 405, 494, 521, 698
DpnI	GATC	4 cut(s)	226, 464, 677, 726
DpnII	GATC	4 cut(s)	224, 462, 675, 724
DraI	TTTAAA	1 cut(s)	742
DrdI	GACNNNNNNGTC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	753
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	395
Eco105I	TACGTA	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	7 cut(s)	53, 166, 307, 361, 452, 682, 710
FaqI	GGGAC	2 cut(s)	89, 760
FatI	CATG	7 cut(s)	49, 162, 303, 357, 448, 678, 706
Fnu4HI	GCNGC	3 cut(s)	296, 510, 694
FokI	GGATG	4 cut(s)	150, 304, 394, 659
Fsp4HI	GCNGC	3 cut(s)	296, 510, 694
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	3 cut(s)	296, 510, 694
GsaI	CCCAGC	1 cut(s)	644
HapII	CCGG	2 cut(s)	228, 506
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	7 cut(s)	53, 166, 307, 361, 452, 682, 710
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	113, 487, 568, 587
HpaII	CCGG	2 cut(s)	228, 506
HphI	GGTGA	2 cut(s)	199, 728
Hpy166II	GTNNAC	2 cut(s)	313, 551
Hpy188I	TCNGA	4 cut(s)	270, 322, 460, 701
Hpy188III	TCNNGA	3 cut(s)	228, 376, 591
Hpy8I	GTNNAC	2 cut(s)	313, 551
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	5 cut(s)	251, 328, 365, 598, 751
HpyCH4IV	ACGT	2 cut(s)	45, 331
HpyCH4V	TGCA	4 cut(s)	49, 128, 452, 693
HpyF3I	CTNAG	5 cut(s)	186, 405, 494, 521, 698
HpySE526I	ACGT	2 cut(s)	45, 331
Hsp92II	CATG	7 cut(s)	53, 166, 307, 361, 452, 682, 710
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	369
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	224, 462, 675, 724
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	7 cut(s)	8, 75, 120, 241, 519, 613, 654
Lsp1109I	GCAGC	3 cut(s)	307, 521, 705
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	45, 331
MaeIII	GTNAC	2 cut(s)	683, 755
MalI	GATC	4 cut(s)	226, 464, 677, 726
MboI	GATC	4 cut(s)	224, 462, 675, 724
MboII	GAAGA	6 cut(s)	9, 94, 179, 382, 385, 428
MfeI	CAATTG	2 cut(s)	198, 688
MflI	RGATCY	2 cut(s)	224, 724
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	181, 215, 372, 603, 666, 707
Mph1103I	ATGCAT	1 cut(s)	454
MroI	TCCGGA	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	6 cut(s)	146, 239, 339, 431, 600, 741
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	644, 762
MspI	CCGG	2 cut(s)	228, 506
MunI	CAATTG	2 cut(s)	198, 688
MvnI	CGCG	1 cut(s)	437
NaeI	GCCGGC	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	224, 462, 675, 724
NgoMIV	GCCGGC	1 cut(s)	505
NlaIII	CATG	7 cut(s)	53, 166, 307, 361, 452, 682, 710
NlaIV	GGNNCC	2 cut(s)	226, 367
NmuCI	GTSAC	2 cut(s)	683, 755
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	53, 452
PaeR7I	CTCGAG	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	113, 487, 568
Pfl23II	CGTACG	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	297, 511, 695
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
Ppu21I	YACGTR	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	640
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	226, 367
PsuI	RGATCY	2 cut(s)	224, 724
RsaI	GTAC	5 cut(s)	193, 330, 367, 440, 534
RsaNI	GTAC	5 cut(s)	192, 329, 366, 439, 533
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	6 cut(s)	146, 239, 339, 431, 600, 741
SatI	GCNGC	3 cut(s)	296, 510, 694
Sau3AI	GATC	4 cut(s)	224, 462, 675, 724
SchI	GAGTC	1 cut(s)	581
SetI	ASST	5 cut(s)	48, 207, 300, 334, 406
Sfr274I	CTCGAG	1 cut(s)	589
SlaI	CTCGAG	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SnaBI	TACGTA	1 cut(s)	332
SsiI	CCGC	2 cut(s)	644, 762
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	5 cut(s)	251, 328, 365, 598, 751
TaiI	ACGT	2 cut(s)	48, 334
TaqI	TCGA	2 cut(s)	545, 590
TfiI	GAWTC	3 cut(s)	113, 487, 568
Tru1I	TTAA	6 cut(s)	146, 239, 339, 431, 600, 741
Tru9I	TTAA	6 cut(s)	146, 239, 339, 431, 600, 741
TscAI	CASTG	2 cut(s)	27, 190
TseFI	GTSAC	2 cut(s)	683, 755
TseI	GCWGC	3 cut(s)	295, 509, 693
Tsp45I	GTSAC	2 cut(s)	683, 755
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	27, 190
Van91I	CCANNNNNTGG	1 cut(s)	216
XapI	RAATTY	4 cut(s)	32, 241, 264, 633
XceI	RCATGY	2 cut(s)	53, 452
XhoI	CTCGAG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.