MD01G1026100.v1.1

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0004095
Physical Location & Seq
Reverse (-)
9853427 .. 9854005
579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1026100.v1.1.491

Sequence Viewer

Length: 579 bp
ATGGAAGATTATCCAATTGTCACACCAGGTACAAAAATCGACCTCACCGTCAAATCCATGGAACCGACTACGATTCCGGTTAACATAAAAATTTCAGAGAGGCGGCACCAGATACAAGCGGGTAGAACAGAAACTGTGTACAGGCTTAAAGAGAAAATCCACATTATTGATGGCACACCCATCAAAAGAATTTCACTCTTTTTCTGTGGAATCGAGTTGGAAGACGATTTTCGCAACTTGAGTGAGTACAGTGTTCGTGAATTTTCCGAGATACTATTGTTGCTCAAGACCATGAATCGAATAAAGAGTGACCCTCCGTCGAGGAGGTTGAGTCTTGTGGTTCAAACATCCTCGAGTTTGCTCAATGCGACCAGCATTCCTGTGAGAATCAAGGACTCGAACACAGTTAATGAGCTGAGGCAACTGCTTCTGAGCAGAAAACTTCTTCCGATTGACGATTATTTGTTCATGCTTAGGCAGATGACTATGGGAGAAAACTGCAGCCTCAGGTCGCATGGTGTGGAAGATGGAGATTCCATATACGTATTCAAAGGGACAGTCCATCGCGGCGGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

193

Amino Acids

22.0

Weight (kDa)

8.87

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 27 - 96 4.8e-10 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 105
AccII CGCG 1 cut(s) 567
AciI CCGC 4 cut(s) 103, 119, 567, 570
AcsI RAATTY 3 cut(s) 90, 189, 260
AfaI GTAC 3 cut(s) 31, 140, 248
AgsI TTSAA 2 cut(s) 344, 550
AhdI GACNNNNNGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 501
ApoI RAATTY 3 cut(s) 90, 189, 260
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 506
BaeI ACNNNNGTAYC 2 cut(s) 263, 296
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 513
BccI CCATC 4 cut(s) 164, 188, 521, 570
BciT130I CCWGG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 499
BisI GCNGC 3 cut(s) 104, 502, 568
BlsI GCNGC 3 cut(s) 105, 503, 569
Bme1390I CCNGG 1 cut(s) 27
BmeRI GACNNNNNGTC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 63, 107
BmrFI CCNGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 298, 330
Bpu10I CCTNAGC 2 cut(s) 416, 473
BpuEI CTTGAG 2 cut(s) 259, 269
BsaAI YACGTR 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bse21I CCTNAGG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 347
BseMII CTCAG 3 cut(s) 407, 422, 520
BseRI GAGGAG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 103, 119, 567, 570
BspCNI CTCAG 3 cut(s) 408, 423, 519
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 63, 107
BspMAI CTGCAG 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 5 cut(s) 49, 136, 251, 406, 559
BstAUI TGTACA 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 544
BstDEI CTNAG 4 cut(s) 416, 431, 473, 506
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 347
BstFNI CGCG 1 cut(s) 567
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 499
BstSNI TACGTA 1 cut(s) 544
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 513
BstV2I GAAGAC 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 3 cut(s) 30, 139, 247
CviAII CATG 4 cut(s) 58, 292, 469, 515
CviJI RGCY 3 cut(s) 145, 415, 504
CviKI_1 RGCY 3 cut(s) 145, 415, 504
CviQI GTAC 3 cut(s) 30, 139, 247
DdeI CTNAG 4 cut(s) 416, 431, 473, 506
DrdI GACNNNNNNGTC 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 316
Eco105I TACGTA 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 61, 295, 472, 518
FaiI YATR 8 cut(s) 59, 86, 293, 470, 488, 516, 539, 541
FaqI GGGAC 1 cut(s) 568
FatI CATG 4 cut(s) 57, 291, 468, 514
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 104, 502, 568
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 104, 502, 568
GluI GCNGC 3 cut(s) 104, 502, 568
HapII CCGG 1 cut(s) 77
Hin1II CATG 4 cut(s) 61, 295, 472, 518
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 7 cut(s) 73, 210, 295, 331, 387, 395, 533
HpaI GTTAAC 1 cut(s) 82
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 82, 139
Hpy188I TCNGA 4 cut(s) 97, 268, 432, 450
Hpy188III TCNNGA 2 cut(s) 257, 286
Hpy8I GTNNAC 2 cut(s) 82, 139
Hpy99I CGWCG 1 cut(s) 322
HpyCH4III ACNGT 5 cut(s) 49, 136, 251, 406, 559
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 1 cut(s) 501
HpyF3I CTNAG 4 cut(s) 416, 431, 473, 506
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 4 cut(s) 61, 295, 472, 518
KspAI GTTAAC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 12, 39, 90, 122, 127, 385, 393, 493
Lsp1109I GCAGC 1 cut(s) 513
MabI ACCWGGT 1 cut(s) 25
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 2 cut(s) 19, 308
MboII GAAGA 4 cut(s) 17, 233, 437, 536
MfeI CAATTG 1 cut(s) 15
MluCI AATT 4 cut(s) 15, 90, 189, 260
MlyI GAGTC 2 cut(s) 340, 389
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 8 cut(s) 53, 93, 315, 318, 324, 361, 411, 515
MseI TTAA 4 cut(s) 81, 147, 408, 577
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 567
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 4 cut(s) 61, 295, 472, 518
NlaIV GGNNCC 2 cut(s) 63, 107
NmuCI GTSAC 2 cut(s) 19, 308
PaeR7I CTCGAG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 5 cut(s) 73, 210, 295, 387, 533
PkrI GCNGC 3 cut(s) 105, 503, 569
PleI GAGTC 2 cut(s) 339, 389
PpsI GAGTC 2 cut(s) 339, 389
Ppu21I YACGTR 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 63, 107
PspXI VCTCGAGB 1 cut(s) 352
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 3 cut(s) 31, 140, 248
RsaNI GTAC 3 cut(s) 30, 139, 247
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 81, 147, 408, 577
SatI GCNGC 3 cut(s) 104, 502, 568
SchI GAGTC 2 cut(s) 340, 389
ScrFI CCNGG 1 cut(s) 27
SetI ASST 6 cut(s) 31, 45, 329, 417, 512, 546
SexAI ACCWGGT 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 3 cut(s) 238, 284, 352
SmoI CTYRAG 3 cut(s) 238, 284, 352
SnaBI TACGTA 1 cut(s) 544
Sse9I AATT 4 cut(s) 15, 90, 189, 260
SsiI CCGC 4 cut(s) 103, 119, 567, 570
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 49, 136, 251, 406, 559
TaiI ACGT 1 cut(s) 546
TaqI TCGA 6 cut(s) 39, 213, 298, 320, 353, 398
TasI AATT 4 cut(s) 15, 90, 189, 260
TatI WGTACW 2 cut(s) 138, 246
TauI GCSGC 2 cut(s) 106, 570
TfiI GAWTC 5 cut(s) 73, 210, 295, 387, 533
Tru1I TTAA 4 cut(s) 81, 147, 408, 577
Tru9I TTAA 4 cut(s) 81, 147, 408, 577
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 19, 308
TseI GCWGC 1 cut(s) 501
Tsp45I GTSAC 2 cut(s) 19, 308
TspDTI ATGAA 2 cut(s) 308, 457
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 256
XapI RAATTY 3 cut(s) 90, 189, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.