Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Reverse (-)

13423487 .. 13424657

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGGGTGATTATTATTACTTCATGGGGACACAAATTTTGCGTAGAAGTGAGTCTCAAAGAACCCGTTGTTGAAATCAAAAGAAAGATAGAACAAATCTTGGGTGCCCCAGTGGCTTCACAAATCCTTGTAGTCTGTGACTGGGAGTTATTAGATGGACTAGACATGGAAGATTATCCAATTATCACTGAAGGTACAAACATTCACCTCACCATCAAATGGATGGGGCCTCCTTTAAATTCATACCATTCTAGTAAAATTCAAATTACCATAAAGTTTTCAGCAAGGCAACTTCACGTAGAGGTGGATAGATCCGAAACCGTGCGTAGCCTTAAAGAAAAATTACACATCATGGATGGTACCCCCATCAAAAGAATGTCACTCTTCTTTTCTGGGATTGAGCTACACGAAGATTTTCGCAATTTAAGCGAGTACGGCATACGTGAATTTTCCGAAATCATTGTGTTCCTCAAGGGCATGAGTCGTGTAAGGGATGAGCTTCCCGTGAGAAGGTTGAGTGTAGTGGTACAAACTTCTTCGAGTTTACTTAATGCTGCCATGATTCCATTGGAAATGAAGGACTCAAGCACAGTTAATGACCTGAGGCAATTGCTTTTGAGCAGTAAAACTCTGCCAATTGATGAGTATTTGTTCATACACAAGCAGAGGATCATGAGGGACAATTGCAGCCTCAGATGGCATGGTGTTGATGATGGAGATTTGTTATATGTATTTAAAGGCGCTGTTTGTCGCAGTGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

255

Amino Acids

29.19

Weight (kDa)

6.72

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	2 cut(s)	104, 359
AccB7I	CCANNNNNTGG	1 cut(s)	219
AclWI	GGATC	2 cut(s)	306, 677
AcsI	RAATTY	4 cut(s)	35, 238, 258, 446
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	4 cut(s)	196, 361, 434, 528
AfiI	CCNNNNNNNGG	2 cut(s)	219, 510
AgsI	TTSAA	2 cut(s)	74, 263
AluBI	AGCT	2 cut(s)	403, 499
AluI	AGCT	2 cut(s)	403, 499
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	306, 677
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	554, 687
ApoI	RAATTY	4 cut(s)	35, 238, 258, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	19, 197, 202
AxyI	CCTNAGG	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	104, 359
BbvI	GCAGC	2 cut(s)	541, 699
BccI	CCATC	7 cut(s)	149, 217, 221, 350, 374, 690, 707
BceAI	ACGGC	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	161, 252
BfoI	RGCGCY	1 cut(s)	744
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	555, 688
BlsI	GCNGC	2 cut(s)	556, 689
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	106, 228, 361
BmrI	ACTGGG	2 cut(s)	104, 151
BmuI	ACTGGG	2 cut(s)	104, 151
BpuEI	CTTGAG	2 cut(s)	455, 568
BsaAI	YACGTR	2 cut(s)	298, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 510
Bse1I	ACTGG	2 cut(s)	110, 146
Bse21I	CCTNAGG	1 cut(s)	602
BseGI	GGATG	3 cut(s)	228, 361, 499
BseLI	CCNNNNNNNGG	2 cut(s)	219, 510
BseMII	CTCAG	2 cut(s)	593, 706
BseNI	ACTGG	2 cut(s)	110, 146
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	541, 699
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	104, 359
BslFI	GGGAC	2 cut(s)	42, 692
BslI	CCNNNNNNNGG	2 cut(s)	219, 510
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	42, 692
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	311, 669
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	594, 705
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	106, 228, 361
BspPI	GGATC	2 cut(s)	306, 677
BspT107I	GGYRCC	2 cut(s)	104, 359
BsrI	ACTGG	2 cut(s)	110, 146
BssMI	GATC	2 cut(s)	311, 669
Bst4CI	ACNGT	2 cut(s)	322, 592
Bst6I	CTCTTC	1 cut(s)	389
BstBAI	YACGTR	2 cut(s)	298, 443
BstDEI	CTNAG	2 cut(s)	602, 692
BstF5I	GGATG	3 cut(s)	228, 361, 499
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	2 cut(s)	314, 672
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	311, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 426, 435
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	541, 699
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
Bsu36I	CCTNAGG	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	228, 361, 499
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	3 cut(s)	117, 186, 760
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	195, 360, 433, 527
CviAII	CATG	7 cut(s)	24, 166, 352, 478, 559, 673, 701
CviJI	RGCY	6 cut(s)	116, 229, 330, 403, 499, 690
CviKI_1	RGCY	6 cut(s)	116, 229, 330, 403, 499, 690
CviQI	GTAC	4 cut(s)	195, 360, 433, 527
DdeI	CTNAG	2 cut(s)	602, 692
DpnI	GATC	2 cut(s)	313, 671
DpnII	GATC	2 cut(s)	311, 669
DraI	TTTAAA	2 cut(s)	237, 736
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	227
FaeI	CATG	7 cut(s)	27, 169, 355, 481, 562, 676, 704
FaqI	GGGAC	2 cut(s)	42, 692
FatI	CATG	7 cut(s)	23, 165, 351, 477, 558, 672, 700
Fnu4HI	GCNGC	2 cut(s)	555, 688
FokI	GGATG	3 cut(s)	235, 368, 506
Fsp4HI	GCNGC	2 cut(s)	555, 688
FspBI	CTAG	2 cut(s)	161, 252
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	2 cut(s)	555, 688
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	7 cut(s)	27, 169, 355, 481, 562, 676, 704
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HinfI	GANTC	4 cut(s)	52, 481, 562, 581
HphI	GGTGA	3 cut(s)	19, 197, 202
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	316, 454, 695
Hpy188III	TCNNGA	1 cut(s)	673
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	3 cut(s)	185, 504, 571
HpyCH4III	ACNGT	2 cut(s)	322, 592
HpyCH4IV	ACGT	2 cut(s)	297, 442
HpyCH4V	TGCA	1 cut(s)	687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 426, 435
HpyF3I	CTNAG	2 cut(s)	602, 692
HpySE526I	ACGT	2 cut(s)	297, 442
Hsp92II	CATG	7 cut(s)	27, 169, 355, 481, 562, 676, 704
HspAI	GCGC	1 cut(s)	741
KpnI	GGTACC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	311, 669
LpnPI	CCDG	4 cut(s)	123, 127, 378, 614
Lsp1109I	GCAGC	2 cut(s)	541, 699
MaeI	CTAG	2 cut(s)	161, 252
MaeII	ACGT	2 cut(s)	297, 442
MaeIII	GTNAC	2 cut(s)	137, 378
MalI	GATC	2 cut(s)	313, 671
MboI	GATC	2 cut(s)	311, 669
MboII	GAAGA	4 cut(s)	182, 376, 422, 528
MfeI	CAATTG	3 cut(s)	608, 636, 682
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	3 cut(s)	61, 490, 575
MnlI	CCTC	8 cut(s)	218, 240, 295, 479, 597, 660, 669, 701
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	6 cut(s)	236, 333, 425, 549, 594, 735
MunI	CAATTG	3 cut(s)	608, 636, 682
MwoI	GCNNNNNNNGC	3 cut(s)	113, 426, 435
NdeII	GATC	2 cut(s)	311, 669
NlaIII	CATG	7 cut(s)	27, 169, 355, 481, 562, 676, 704
NlaIV	GGNNCC	3 cut(s)	106, 228, 361
NmuCI	GTSAC	2 cut(s)	137, 378
PagI	TCATGA	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	556, 689
PleI	GAGTC	3 cut(s)	60, 489, 575
PpsI	GAGTC	3 cut(s)	60, 489, 575
Ppu21I	YACGTR	2 cut(s)	298, 443
PspN4I	GGNNCC	3 cut(s)	106, 228, 361
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	4 cut(s)	196, 361, 434, 528
RsaNI	GTAC	4 cut(s)	195, 360, 433, 527
SaqAI	TTAA	6 cut(s)	236, 333, 425, 549, 594, 735
SatI	GCNGC	2 cut(s)	555, 688
Sau3AI	GATC	2 cut(s)	311, 669
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	3 cut(s)	61, 490, 575
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	196, 210, 300, 306, 405, 445, 501, 515, 603
SmlI	CTYRAG	2 cut(s)	470, 583
SmoI	CTYRAG	2 cut(s)	470, 583
SspMI	CTAG	2 cut(s)	161, 252
TaaI	ACNGT	2 cut(s)	322, 592
TaiI	ACGT	2 cut(s)	300, 445
TaqI	TCGA	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	6 cut(s)	236, 333, 425, 549, 594, 735
Tru9I	TTAA	6 cut(s)	236, 333, 425, 549, 594, 735
TscAI	CASTG	3 cut(s)	117, 193, 760
TseFI	GTSAC	2 cut(s)	137, 378
TseI	GCWGC	2 cut(s)	554, 687
Tsp45I	GTSAC	2 cut(s)	137, 378
TspDTI	ATGAA	4 cut(s)	12, 231, 590, 643
TspRI	CASTG	3 cut(s)	117, 193, 760
Van91I	CCANNNNNTGG	1 cut(s)	219
XapI	RAATTY	4 cut(s)	35, 238, 258, 446
XcmI	CCANNNNNNNNNTGG	2 cut(s)	220, 565
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	2 cut(s)	161, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.