Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Reverse (-)

22056259 .. 22057014

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGGGTCATTATTGATACATGGGGACATGAATTCACCATAGAAGTGGGTCTCAAAGAACCTGTCCTTGAAATCAAAGGGAAGATTGCACAACTCTTGGGCATCCCAATGGCTTCACAAACCCTTGCAGTGTGGGGATGGGAATTAGAAGATGGACTAGACATGAACGACTATCCAATTGTCACTGAAGGTACAAAAATTAACCTCACAATCAAATGCATGGAACCTCCTTTTCACCGTTCTAGTACGATTCCGATTATCATAAAATTTTCAGCAATACAGCATCACATAGAGGTGAACAGAACAGAAACAGTGAGTAGCCTTAAAGATACAATCCACATTCTTTATGGTACACCCATCAAAAGAATGTCACTCTTCTTTTGTGGAATTGAGTTAGAAGAAGATATTCGTAACTTAAGCGAGTACGGCATACGTGAATTTTCTGAAATCCTTGTGTTCCTCAAGACCGTGAATCGTCTGACGGATAATCCTCCCTCAAGGAGATTGAGTCTTGTGGTACAAACTTCCTCAAGCTTGCTTAATGCATCCAGAATTCCTTTGAAAATGAAGGACTCAAGCACAGTTAATGAGATGAGGCAACTGCTTTTAAGCAGGAAACTTCTTCCAATTGATGATTATTTGTTCATACACAAGCAGAGGACCATGCGTGACAATTGTAGCCTCAGGTGGCATGGTGTTGAAGATGGAGATCCCATATATGTGTTTAAAGGGACCGTCCATCGCAGCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

252

Amino Acids

28.81

Weight (kDa)

6.72

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	1 cut(s)	704
AcsI	RAATTY	4 cut(s)	32, 266, 437, 552
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	5 cut(s)	193, 247, 352, 425, 519
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	71, 562, 701
AluBI	AGCT	1 cut(s)	534
AluI	AGCT	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	744
ApoI	RAATTY	4 cut(s)	32, 266, 437, 552
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	660, 732
AsuHPI	GGTGA	3 cut(s)	28, 227, 307
AvaII	GGWCC	2 cut(s)	660, 732
AxyI	CCTNAGG	1 cut(s)	683
BccI	CCATC	5 cut(s)	132, 146, 365, 698, 747
BceAI	ACGGC	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	158, 243
BfrI	CTTAAG	1 cut(s)	415
BisI	GCNGC	1 cut(s)	745
BlsI	GCNGC	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	660, 732
BmgT120I	GGNCC	2 cut(s)	660, 732
BmiI	GGNNCC	2 cut(s)	225, 733
BmsI	GCATC	3 cut(s)	111, 292, 554
BpuEI	CTTGAG	4 cut(s)	446, 481, 514, 559
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bse21I	CCTNAGG	1 cut(s)	683
Bse8I	GATNNNNATC	1 cut(s)	708
BseGI	GGATG	3 cut(s)	102, 143, 545
BseJI	GATNNNNATC	1 cut(s)	708
BseMII	CTCAG	1 cut(s)	697
BslFI	GGGAC	2 cut(s)	39, 745
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	39, 745
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	225, 733
BspPI	GGATC	1 cut(s)	704
BspTI	CTTAAG	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	56
BssMI	GATC	1 cut(s)	709
Bst4CI	ACNGT	5 cut(s)	239, 313, 469, 583, 736
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	683
BstF5I	GGATG	3 cut(s)	102, 143, 545
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	709
Bsu36I	CCTNAGG	1 cut(s)	683
BtgZI	GCGATG	1 cut(s)	725
BtsCI	GGATG	3 cut(s)	102, 143, 545
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 183, 318
Cac8I	GCNNGC	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	660, 732
Csp6I	GTAC	5 cut(s)	192, 246, 351, 424, 518
CviAII	CATG	6 cut(s)	21, 29, 163, 220, 664, 692
CviJI	RGCY	4 cut(s)	113, 321, 534, 681
CviKI_1	RGCY	4 cut(s)	113, 321, 534, 681
CviQI	GTAC	5 cut(s)	192, 246, 351, 424, 518
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
DraI	TTTAAA	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	660, 732
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	683
EcoRI	GAATTC	2 cut(s)	32, 552
EcoT22I	ATGCAT	2 cut(s)	221, 547
FaeI	CATG	6 cut(s)	24, 32, 166, 223, 667, 695
FaqI	GGGAC	2 cut(s)	39, 745
FatI	CATG	6 cut(s)	20, 28, 162, 219, 663, 691
Fnu4HI	GCNGC	1 cut(s)	745
FokI	GGATG	3 cut(s)	89, 150, 532
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	2 cut(s)	158, 243
GluI	GCNGC	1 cut(s)	745
Hin1II	CATG	6 cut(s)	24, 32, 166, 223, 667, 695
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	4 cut(s)	250, 472, 508, 572
HphI	GGTGA	3 cut(s)	28, 227, 307
Hpy166II	GTNNAC	2 cut(s)	298, 353
Hpy188I	TCNGA	3 cut(s)	255, 445, 480
Hpy188III	TCNNGA	2 cut(s)	463, 549
Hpy8I	GTNNAC	2 cut(s)	298, 353
HpyAV	CCTTC	2 cut(s)	182, 562
HpyCH4III	ACNGT	5 cut(s)	239, 313, 469, 583, 736
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	89, 128, 219, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	6 cut(s)	24, 32, 166, 223, 667, 695
Kzo9I	GATC	1 cut(s)	709
LpnPI	CCDG	4 cut(s)	75, 562, 598, 670
LweI	GCATC	3 cut(s)	111, 292, 554
MaeI	CTAG	2 cut(s)	158, 243
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	4 cut(s)	181, 369, 410, 668
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	7 cut(s)	94, 161, 367, 410, 413, 614, 713
MfeI	CAATTG	3 cut(s)	177, 627, 673
MflI	RGATCY	1 cut(s)	709
MlyI	GAGTC	2 cut(s)	517, 566
Mph1103I	ATGCAT	2 cut(s)	221, 547
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	7 cut(s)	201, 324, 416, 540, 585, 608, 726
MslI	CAYNNNNRTG	4 cut(s)	44, 107, 293, 719
MspA1I	CMGCKG	1 cut(s)	747
MspCI	CTTAAG	1 cut(s)	415
MunI	CAATTG	3 cut(s)	177, 627, 673
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	6 cut(s)	24, 32, 166, 223, 667, 695
NlaIV	GGNNCC	2 cut(s)	225, 733
NmuCI	GTSAC	3 cut(s)	181, 369, 668
NsiI	ATGCAT	2 cut(s)	221, 547
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	250, 472
PkrI	GCNGC	1 cut(s)	746
PleI	GAGTC	2 cut(s)	516, 566
PpsI	GAGTC	2 cut(s)	516, 566
Ppu21I	YACGTR	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	225, 733
PspPI	GGNCC	2 cut(s)	660, 732
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	5 cut(s)	193, 247, 352, 425, 519
RsaNI	GTAC	5 cut(s)	192, 246, 351, 424, 518
RseI	CAYNNNNRTG	4 cut(s)	44, 107, 293, 719
SaqAI	TTAA	7 cut(s)	201, 324, 416, 540, 585, 608, 726
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	2 cut(s)	660, 732
SchI	GAGTC	2 cut(s)	517, 566
SetI	ASST	8 cut(s)	64, 193, 207, 229, 297, 436, 536, 689
SfaNI	GCATC	3 cut(s)	111, 292, 554
SinI	GGWCC	2 cut(s)	660, 732
SmiMI	CAYNNNNRTG	4 cut(s)	44, 107, 293, 719
SmlI	CTYRAG	5 cut(s)	415, 461, 496, 529, 574
SmoI	CTYRAG	5 cut(s)	415, 461, 496, 529, 574
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	2 cut(s)	158, 243
TaaI	ACNGT	5 cut(s)	239, 313, 469, 583, 736
TaiI	ACGT	1 cut(s)	436
TfiI	GAWTC	2 cut(s)	250, 472
Tru1I	TTAA	7 cut(s)	201, 324, 416, 540, 585, 608, 726
Tru9I	TTAA	7 cut(s)	201, 324, 416, 540, 585, 608, 726
TscAI	CASTG	3 cut(s)	135, 190, 318
TseFI	GTSAC	3 cut(s)	181, 369, 668
TseI	GCWGC	1 cut(s)	744
Tsp45I	GTSAC	3 cut(s)	181, 369, 668
TspDTI	ATGAA	4 cut(s)	45, 179, 581, 634
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	135, 190, 318
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	660, 732
XapI	RAATTY	4 cut(s)	32, 266, 437, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	158, 243
Zsp2I	ATGCAT	2 cut(s)	221, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.