Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Reverse (-)

99808 .. 100401

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000909.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggaagactatccaattgtcactgaaggtacgaaaattgacctcaccatcaaatgcatggaacctcatgtaaaccagtccactcagattcagattatcgtaaaatcttcagcaacacagcatcagctagaggtattcagaacagagacagttggtagcctaaaagaaaaaatccacactattgacggtacaccgatcaaaagaatgtcactcttcttttctggaattgagttggaagaagattttcgcaaattaagtgagtatgggatatgtgaattttctgagatcgctttgttcctcaagaccatgaattatctcaaagacggccctccgtccagaagattgagtatagtggtacaaacttccttgagtttacttaattcagcaagtattcctttgaaaatggaggatgcaagcacatttaatgacttgaggcagctacttttgagcagtaaatttcttcctgctgatgattatttgttcctaaacaagcagaggaccatgcgtgacaattgtagcctcaagtggcatggtgtagaagatggagattctatatatgtatttaaagggactgtctatcgcagtggatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

197

Amino Acids

22.5

Weight (kDa)

5.84

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	275, 455
AcuI	CTGAAG	2 cut(s)	45, 93
AfaI	GTAC	3 cut(s)	31, 190, 357
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	2 cut(s)	127, 439
AluI	AGCT	2 cut(s)	127, 439
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	275, 455
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	326, 498
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	56, 536
BceAI	ACGGC	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	326, 498
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	2 cut(s)	130, 400
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	4 cut(s)	284, 388, 451, 506
Bse1I	ACTGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	98, 273
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	195, 285
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	97, 274
BspLI	GGNNCC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	195, 285
Bst4CI	ACNGT	3 cut(s)	151, 188, 574
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	84, 282
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	198, 288
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	195, 285
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	21, 589
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	326, 498
Csp6I	GTAC	3 cut(s)	30, 189, 356
CviAII	CATG	5 cut(s)	58, 68, 307, 502, 530
CviJI	RGCY	5 cut(s)	127, 159, 327, 439, 519
CviKI_1	RGCY	5 cut(s)	127, 159, 327, 439, 519
CviQI	GTAC	3 cut(s)	30, 189, 356
DdeI	CTNAG	2 cut(s)	84, 282
DpnI	GATC	2 cut(s)	197, 287
DpnII	GATC	2 cut(s)	195, 285
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	45, 93
EcoT22I	ATGCAT	1 cut(s)	59
FaeI	CATG	5 cut(s)	61, 71, 310, 505, 533
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	57, 67, 306, 501, 529
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	61, 71, 310, 505, 533
HinfI	GANTC	2 cut(s)	88, 548
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	4 cut(s)	73, 81, 191, 374
Hpy188I	TCNGA	4 cut(s)	87, 93, 140, 283
Hpy188III	TCNNGA	3 cut(s)	222, 301, 336
Hpy8I	GTNNAC	4 cut(s)	73, 81, 191, 374
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	151, 188, 574
HpyCH4V	TGCA	2 cut(s)	57, 413
HpyF3I	CTNAG	2 cut(s)	84, 282
Hsp92II	CATG	5 cut(s)	61, 71, 310, 505, 533
Kzo9I	GATC	2 cut(s)	195, 285
LpnPI	CCDG	4 cut(s)	89, 207, 349, 477
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	2 cut(s)	130, 400
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	19, 207, 506
MalI	GATC	2 cut(s)	197, 287
MboI	GATC	2 cut(s)	195, 285
MboII	GAAGA	8 cut(s)	17, 99, 205, 248, 251, 351, 452, 551
MfeI	CAATTG	2 cut(s)	15, 511
MluCI	AATT	9 cut(s)	15, 36, 225, 251, 275, 310, 379, 455, 511
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	53, 75, 124, 308, 339, 400, 426, 489, 530
Mph1103I	ATGCAT	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	254, 378, 423, 564
MunI	CAATTG	2 cut(s)	15, 511
NdeII	GATC	2 cut(s)	195, 285
NlaIII	CATG	5 cut(s)	61, 71, 310, 505, 533
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	19, 207, 506
NsiI	ATGCAT	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	88, 548
PkrI	GCNGC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	326, 498
RsaI	GTAC	3 cut(s)	31, 190, 357
RsaNI	GTAC	3 cut(s)	30, 189, 356
SaqAI	TTAA	4 cut(s)	254, 378, 423, 564
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	195, 285
Sau96I	GGNCC	2 cut(s)	326, 498
SetI	ASST	6 cut(s)	31, 45, 67, 129, 135, 441
SfaNI	GCATC	2 cut(s)	130, 400
SinI	GGWCC	1 cut(s)	498
SmlI	CTYRAG	4 cut(s)	299, 367, 430, 521
SmoI	CTYRAG	4 cut(s)	299, 367, 430, 521
Sse9I	AATT	9 cut(s)	15, 36, 225, 251, 275, 310, 379, 455, 511
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	151, 188, 574
TasI	AATT	9 cut(s)	15, 36, 225, 251, 275, 310, 379, 455, 511
TfiI	GAWTC	2 cut(s)	88, 548
Tru1I	TTAA	4 cut(s)	254, 378, 423, 564
Tru9I	TTAA	4 cut(s)	254, 378, 423, 564
TscAI	CASTG	2 cut(s)	28, 589
TseFI	GTSAC	3 cut(s)	19, 207, 506
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	3 cut(s)	19, 207, 506
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	28, 589
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	2 cut(s)	275, 455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.