AT2G32350

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004095
Physical Location & Seq
Forward (+)
13734945 .. 13735788
844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32350.1

Sequence Viewer

Length: 729 bp
ATGGAAATCAGCGAACAAGAATCTGTGTTGGAGGTCAAGAAACGTCTAGGACAGTTTCTTCAGATACCAACATCTTCTATAACTCTCTTTGTCTCTTGTTGGGAACTCATCGACGGTCTTGACATCGAAGATTACCCAATCATCTCTCACGGCACCAGAATCGACCTCACCGTAACTCCCCTTTTCACCGCACCGTCTTTTATCCACGCCGCCGTTAGGAAAATTCACGTCACCGTCAAGTTCCCGTCAAAACAGTTCACCGTCGAAGTAGACAGAACCGAAACGGTAAGTAGCTTAAAGGACAAGATTCACATTGTTGAGAACACACCGATAAAGCGAATGCAGTTATACTATTCTGGGATCGAGCTAGCTGATGATTATCGAAACCTAAACGAATATGGAATCACAGAATTCTCAGAGATTGTGGTGTTTCTTAAGTCAATCAACCGTGCGAAAGACGTCGCTCCGGTAAGGAAACTCTGTTTCTTGGTGCAGACGTCATCGAGTTTATTCAACGGTGCGCGAATTCCAGTGGAGATTAAGGACACTTGCACCATCTCGGAGATGCGAGAAGGGTTACAAGCTAACAAGACGTTGCCAAGAGACGAGTATATATTCGTACACAAGCAACGGATTATGCGAGAGAATTGTAGTCTTCGGTGGCATGGTGTTGAAAATGGTGACACTCTTTTTGTGTTTAAAGGGTCTATTAGTCGTGAAGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

242

Amino Acids

27.74

Weight (kDa)

6.33

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 77 - 146 2.3e-18 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 462, 500
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 523
AciI CCGC 2 cut(s) 189, 210
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 3 cut(s) 222, 410, 525
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 459, 497
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 1 cut(s) 216
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 2 cut(s) 514, 674
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 4 cut(s) 294, 367, 371, 584
AluI AGCT 4 cut(s) 294, 367, 371, 584
Alw26I GTCTC 2 cut(s) 97, 597
AlwI GGATC 1 cut(s) 368
ApoI RAATTY 3 cut(s) 222, 410, 525
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AspLEI GCGC 1 cut(s) 523
AsuHPI GGTGA 5 cut(s) 160, 178, 223, 250, 692
AsuNHI GCTAGC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 647
BccI CCATC 1 cut(s) 563
BceAI ACGGC 2 cut(s) 166, 197
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 2 cut(s) 97, 597
BfaI CTAG 2 cut(s) 47, 368
BfrI CTTAAG 1 cut(s) 434
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 555
BmtI GCTAGC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 378
BsaHI GRCGYC 2 cut(s) 459, 497
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 530
Bse8I GATNNNNATC 1 cut(s) 378
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 97, 597
BsmBI CGTCTC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 2 cut(s) 189, 210
BspCNI CTCAG 1 cut(s) 428
BspFNI CGCG 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 434
BsrI ACTGG 1 cut(s) 530
BssMI GATC 1 cut(s) 360
BssNI GRCGYC 2 cut(s) 459, 497
BstACI GRCGYC 2 cut(s) 459, 497
BstAFI CTTAAG 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 2 cut(s) 97, 597
BstMBI GATC 1 cut(s) 360
BstUI CGCG 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 647
BtrI CACGTC 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 620
CviAII CATG 1 cut(s) 665
CviJI RGCY 4 cut(s) 294, 367, 371, 584
CviKI_1 RGCY 4 cut(s) 294, 367, 371, 584
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 1 cut(s) 415
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
DraI TTTAAA 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 44
EcoRI GAATTC 2 cut(s) 410, 525
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 1 cut(s) 668
FaiI YATR 7 cut(s) 80, 349, 399, 612, 614, 638, 666
FatI CATG 1 cut(s) 664
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 47, 368
GlaI GCGC 1 cut(s) 522
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 523
Hin1I GRCGYC 2 cut(s) 459, 497
Hin1II CATG 1 cut(s) 668
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HinfI GANTC 4 cut(s) 20, 159, 307, 402
HpaII CCGG 1 cut(s) 467
HphI GGTGA 5 cut(s) 160, 178, 223, 250, 692
Hpy166II GTNNAC 3 cut(s) 258, 271, 622
Hpy188I TCNGA 4 cut(s) 63, 418, 562, 728
Hpy188III TCNNGA 3 cut(s) 37, 119, 716
Hpy8I GTNNAC 3 cut(s) 258, 271, 622
Hpy99I CGWCG 3 cut(s) 116, 266, 464
HpyAV CCTTC 2 cut(s) 566, 713
HpyCH4IV ACGT 5 cut(s) 43, 228, 459, 497, 593
HpyCH4V TGCA 3 cut(s) 343, 493, 552
HpyF3I CTNAG 1 cut(s) 415
HpySE526I ACGT 5 cut(s) 43, 228, 459, 497, 593
Hsp92I GRCGYC 2 cut(s) 459, 497
Hsp92II CATG 1 cut(s) 668
HspAI GCGC 1 cut(s) 521
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 4 cut(s) 169, 342, 480, 543
LweI GCATC 1 cut(s) 555
MaeI CTAG 2 cut(s) 47, 368
MaeII ACGT 5 cut(s) 43, 228, 459, 497, 593
MaeIII GTNAC 4 cut(s) 172, 229, 576, 680
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 4 cut(s) 50, 66, 140, 647
MluCI AATT 4 cut(s) 222, 410, 525, 646
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 2 cut(s) 25, 176
MseI TTAA 4 cut(s) 296, 435, 540, 699
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 345
MvnI CGCG 1 cut(s) 523
NdeII GATC 1 cut(s) 360
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 1 cut(s) 668
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 229, 680
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 637
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 4 cut(s) 20, 159, 307, 402
PkrI GCNGC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
SaqAI TTAA 4 cut(s) 296, 435, 540, 699
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 360
SfaNI GCATC 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 222, 410, 525, 646
SsiI CCGC 2 cut(s) 189, 210
SspMI CTAG 2 cut(s) 47, 368
TaiI ACGT 5 cut(s) 46, 231, 462, 500, 596
TaqI TCGA 7 cut(s) 111, 126, 162, 264, 363, 382, 503
TasI AATT 4 cut(s) 222, 410, 525, 646
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 4 cut(s) 20, 159, 307, 402
Tru1I TTAA 4 cut(s) 296, 435, 540, 699
Tru9I TTAA 4 cut(s) 296, 435, 540, 699
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 2 cut(s) 229, 680
Tsp45I GTSAC 2 cut(s) 229, 680
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 434
XapI RAATTY 3 cut(s) 222, 410, 525
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 2 cut(s) 47, 368
ZraI GACGTC 2 cut(s) 460, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.