Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Forward (+)

42918563 .. 42919318

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGGGTGATTATTGGTTCATGGGGTCACAAAGTTGCCATAGAAGTAGGTCTCAAAGAGTCTGTAGTTGAAATCAAAAACAAGATAGAACAACTCTTGGGTGTCCCAGTTGCTTCACAAACCCTTGCCGTCTGTGGCTTGGAGTTGCTAGATGGATTAGACATGGAAGATTACCCGATTGTCACTGAAGGTACCAAAATTGACCTCACCATCAGATATTGGATGGCACCCCCTAATTTTTACCATTCAGGTAAAATTCAGATTATCATCAAGCTTTCAGCTAGACAGCTCCACATAGAGGTTGACAGAACCGAAACGGTGCGCAGCCTCAAAGAAAAAATACATATCATGGATGGCACCCCTATCAAAAGAATGTCACTCTTCTTTTGTGGAATCGAGCTAGAGGAAGATTTTCGCCATTTAAGTGAGTATGGCATACACGAATTTTCTGAAATAGTTGTGTTCCTCAAGTCAATGAGTCGTGTAAAGGATGACCCTCCCTCAAAAAGGTTGAGTCTAGTGGTGCAAACTTCATCGAGTTTACTTAACTCGGCGAGGATTCCTGTGGAAATGAAGGACTCGAGCACAGTACATGAGCTTAAGGAATTACTTTTGAGTGGAAAAATTCTCCCAGTTGATGACTATTTGTTCATACACAAGCAGAGGATCATGCGTGAAAACTGCAGCCTCAAATGGCATGGTGTTGATGATGGGGATTTCTTATACGTCTTTAAAGGGACTGTTTGTCGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

252

Amino Acids

28.6

Weight (kDa)

6.32

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	9 - 72	4.4e-08	Ubiquitin family
ubiquitin	PF00240	88 - 157	1.4e-13	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	323
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	3 cut(s)	191, 226, 356
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	3 cut(s)	255, 443, 624
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	193, 591
AfiI	CCNNNNNNNGG	2 cut(s)	298, 507
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	1 cut(s)	71
AhdI	GACNNNNNGTC	1 cut(s)	744
AluBI	AGCT	5 cut(s)	274, 281, 289, 400, 598
AluI	AGCT	5 cut(s)	274, 281, 289, 400, 598
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	580
ApeKI	GCWGC	2 cut(s)	324, 684
ApoI	RAATTY	3 cut(s)	255, 443, 624
Asp700I	GAANNNNTTC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	19, 199
AvaI	CYCGRG	1 cut(s)	580
BanI	GGYRCC	3 cut(s)	191, 226, 356
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	336, 696
BccI	CCATC	5 cut(s)	146, 217, 218, 347, 704
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	4 cut(s)	149, 282, 401, 518
BfmI	CTRYAG	2 cut(s)	63, 682
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	2 cut(s)	325, 685
BlsI	GCNGC	2 cut(s)	326, 686
BmeRI	GACNNNNNGTC	1 cut(s)	744
BmeT110I	CYCGRG	1 cut(s)	580
BmiI	GGNNCC	3 cut(s)	193, 228, 358
BmrI	ACTGGG	2 cut(s)	101, 626
BmuI	ACTGGG	2 cut(s)	101, 626
BpuEI	CTTGAG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 507
Bse1I	ACTGG	2 cut(s)	107, 632
Bse8I	GATNNNNATC	1 cut(s)	266
BseGI	GGATG	3 cut(s)	228, 358, 496
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	298, 507
BseNI	ACTGG	2 cut(s)	107, 632
BseXI	GCAGC	2 cut(s)	336, 696
BshNI	GGYRCC	3 cut(s)	191, 226, 356
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	580
BslFI	GGGAC	2 cut(s)	89, 751
BslI	CCNNNNNNNGG	2 cut(s)	298, 507
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	89, 751
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	1 cut(s)	666
BspLI	GGNNCC	3 cut(s)	193, 228, 358
BspMAI	CTGCAG	1 cut(s)	686
BspPI	GGATC	1 cut(s)	674
BspT107I	GGYRCC	3 cut(s)	191, 226, 356
BspTI	CTTAAG	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	107, 632
BssMI	GATC	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	319, 589, 742
Bst6I	CTCTTC	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	599
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	228, 358, 496
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	1 cut(s)	669
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	63, 682
BstV1I	GCAGC	2 cut(s)	336, 696
BtsCI	GGATG	3 cut(s)	228, 358, 496
BtsIMutI	CAGTG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	192, 590
CviAII	CATG	6 cut(s)	21, 163, 349, 593, 670, 698
CviJI	RGCY	8 cut(s)	138, 274, 281, 289, 327, 400, 598, 687
CviKI_1	RGCY	8 cut(s)	138, 274, 281, 289, 327, 400, 598, 687
CviQI	GTAC	2 cut(s)	192, 590
DpnI	GATC	1 cut(s)	668
DpnII	GATC	1 cut(s)	666
DraI	TTTAAA	1 cut(s)	733
DriI	GACNNNNNGTC	1 cut(s)	744
Eam1104I	CTCTTC	1 cut(s)	386
Eam1105I	GACNNNNNGTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	580
EcoNI	CCTNNNNNAGG	1 cut(s)	505
FaeI	CATG	6 cut(s)	24, 166, 352, 596, 673, 701
FaqI	GGGAC	2 cut(s)	89, 751
FatI	CATG	6 cut(s)	20, 162, 348, 592, 669, 697
Fnu4HI	GCNGC	2 cut(s)	325, 685
FokI	GGATG	3 cut(s)	235, 365, 503
Fsp4HI	GCNGC	2 cut(s)	325, 685
FspBI	CTAG	4 cut(s)	149, 282, 401, 518
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	325, 685
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	6 cut(s)	24, 166, 352, 596, 673, 701
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	6 cut(s)	59, 393, 478, 514, 559, 578
HphI	GGTGA	2 cut(s)	19, 199
Hpy166II	GTNNAC	2 cut(s)	304, 542
Hpy188I	TCNGA	3 cut(s)	215, 261, 451
Hpy8I	GTNNAC	2 cut(s)	304, 542
HpyAV	CCTTC	2 cut(s)	182, 568
HpyCH4III	ACNGT	3 cut(s)	319, 589, 742
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	2 cut(s)	526, 684
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	24, 166, 352, 596, 673, 701
HspAI	GCGC	1 cut(s)	322
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	4 cut(s)	120, 234, 576, 645
Lsp1109I	GCAGC	2 cut(s)	336, 696
MaeI	CTAG	4 cut(s)	149, 282, 401, 518
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	3 cut(s)	26, 181, 375
MalI	GATC	1 cut(s)	668
MboI	GATC	1 cut(s)	666
MboII	GAAGA	3 cut(s)	179, 373, 419
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	6 cut(s)	198, 235, 255, 443, 605, 624
MlyI	GAGTC	4 cut(s)	68, 487, 523, 572
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	4 cut(s)	422, 546, 600, 732
MslI	CAYNNNNRTG	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	599
NdeII	GATC	1 cut(s)	666
NlaIII	CATG	6 cut(s)	24, 166, 352, 596, 673, 701
NlaIV	GGNNCC	3 cut(s)	193, 228, 358
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	3 cut(s)	26, 181, 375
NsbI	TGCGCA	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	393, 559
PkrI	GCNGC	2 cut(s)	326, 686
PleI	GAGTC	4 cut(s)	67, 486, 522, 572
PpsI	GAGTC	4 cut(s)	67, 486, 522, 572
PspN4I	GGNNCC	3 cut(s)	193, 228, 358
PspXI	VCTCGAGB	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	193, 591
RsaNI	GTAC	2 cut(s)	192, 590
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	422, 546, 600, 732
SatI	GCNGC	2 cut(s)	325, 685
Sau3AI	GATC	1 cut(s)	666
SchI	GAGTC	4 cut(s)	68, 487, 523, 572
SduI	GDGCHC	1 cut(s)	587
SfcI	CTRYAG	2 cut(s)	63, 682
Sfr274I	CTCGAG	1 cut(s)	580
SlaI	CTCGAG	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	467, 580, 599
SmoI	CTYRAG	3 cut(s)	467, 580, 599
Sse9I	AATT	6 cut(s)	198, 235, 255, 443, 605, 624
SspMI	CTAG	4 cut(s)	149, 282, 401, 518
TaaI	ACNGT	3 cut(s)	319, 589, 742
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	3 cut(s)	396, 536, 581
TasI	AATT	6 cut(s)	198, 235, 255, 443, 605, 624
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	2 cut(s)	393, 559
Tru1I	TTAA	4 cut(s)	422, 546, 600, 732
Tru9I	TTAA	4 cut(s)	422, 546, 600, 732
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	3 cut(s)	26, 181, 375
TseI	GCWGC	2 cut(s)	324, 684
Tsp45I	GTSAC	3 cut(s)	26, 181, 375
TspDTI	ATGAA	4 cut(s)	9, 522, 587, 640
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	599
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	3 cut(s)	255, 443, 624
XhoI	CTCGAG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	4 cut(s)	149, 282, 401, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.