RLG00000036498

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004095
Physical Location & Seq
Forward (+)
81324122 .. 81324664
543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036498

Sequence Viewer

Length: 543 bp
ATGGAAGACTATCCAATTGTCACTGAAGGTACGAAAACTGACCACACCATCAAATGCATGGAACCTCATGTAAACCAGTCCACTCAGATTCAGATTATCGTAAAATCTTCAGCAACACAGCATCAGTTAGAGGTATTCAGAACAGAGACAGTTAGTAGCCTAGAAGAAAAAATCCACACTATTGACGGAACACGGATCAAAAGAATGTCACTCTTTTCTGGAATTGAGTTGGAAGAAGATTTTCGCAAATTAAGAGAGTATGGGATATGTGAATTTTCTGAGATCGCTTTGTTCCTCAAGACCATGAATCGTCTCAAAGACGGCCCTCCGTCCAGAAGATTGAGTATAGTGGTACAAACTTCCTCGAGTTTACTTAATTCAGCAAGTATTCCTTTGAAAATGGAGGATGCAAGCACAGTTAATGACTTGAGGCAGTTACTTTTGAGCAGTAAATTTCTTCCTGCTGATGATTATTTGTTCATAGTTTCATACACAAGCACAGGACCATGCGTGACAATTGTAGCCTCAAGTGGCGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

5.59

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 32 - 100 5e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 272, 452
AcuI CTGAAG 2 cut(s) 45, 93
AfaI GTAC 2 cut(s) 31, 354
AgsI TTSAA 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 140, 317
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 1 cut(s) 322
ApoI RAATTY 2 cut(s) 272, 452
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 323, 503
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 140, 317
BfaI CTAG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 2 cut(s) 323, 503
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 2 cut(s) 130, 397
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 281, 448, 511
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 98, 270
BseNI ACTGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 140, 317
BsmBI CGTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 364
Bsp143I GATC 2 cut(s) 195, 282
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 2 cut(s) 97, 271
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 76
BssMI GATC 2 cut(s) 195, 282
Bst4CI ACNGT 2 cut(s) 151, 418
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 84, 279
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 198, 285
BstMAI GTCTC 2 cut(s) 140, 317
BstMBI GATC 2 cut(s) 195, 282
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 323, 503
Csp6I GTAC 2 cut(s) 30, 353
CspCI CAANNNNNGTGG 1 cut(s) 516
CviAII CATG 4 cut(s) 58, 68, 304, 507
CviJI RGCY 3 cut(s) 159, 324, 524
CviKI_1 RGCY 3 cut(s) 159, 324, 524
CviQI GTAC 2 cut(s) 30, 353
DdeI CTNAG 2 cut(s) 84, 279
DpnI GATC 2 cut(s) 197, 284
DpnII GATC 2 cut(s) 195, 282
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 2 cut(s) 45, 93
Eco88I CYCGRG 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 4 cut(s) 61, 71, 307, 510
FaiI YATR 9 cut(s) 59, 69, 261, 268, 305, 347, 482, 490, 508
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 4 cut(s) 57, 67, 303, 506
FokI GGATG 1 cut(s) 419
FspBI CTAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 324
Hin1II CATG 4 cut(s) 61, 71, 307, 510
HinfI GANTC 2 cut(s) 88, 307
Hpy166II GTNNAC 3 cut(s) 73, 81, 371
Hpy188I TCNGA 4 cut(s) 87, 93, 140, 280
Hpy188III TCNNGA 3 cut(s) 219, 298, 333
Hpy8I GTNNAC 3 cut(s) 73, 81, 371
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 151, 418
HpyCH4V TGCA 2 cut(s) 57, 410
HpyF3I CTNAG 2 cut(s) 84, 279
Hsp92II CATG 4 cut(s) 61, 71, 307, 510
Kzo9I GATC 2 cut(s) 195, 282
LpnPI CCDG 5 cut(s) 89, 204, 346, 474, 486
LweI GCATC 2 cut(s) 130, 397
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 4 cut(s) 19, 207, 435, 511
MalI GATC 2 cut(s) 197, 284
MboI GATC 2 cut(s) 195, 282
MboII GAAGA 7 cut(s) 17, 99, 176, 245, 248, 348, 449
MfeI CAATTG 2 cut(s) 15, 516
MluCI AATT 7 cut(s) 15, 222, 248, 272, 376, 452, 516
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 8 cut(s) 75, 124, 305, 336, 373, 397, 423, 535
Mph1103I ATGCAT 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 251, 375, 420
MunI CAATTG 2 cut(s) 15, 516
NdeII GATC 2 cut(s) 195, 282
NlaIII CATG 4 cut(s) 61, 71, 307, 510
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 3 cut(s) 19, 207, 511
NsiI ATGCAT 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 88, 307
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 323, 503
PspXI VCTCGAGB 1 cut(s) 364
RsaI GTAC 2 cut(s) 31, 354
RsaNI GTAC 2 cut(s) 30, 353
SaqAI TTAA 3 cut(s) 251, 375, 420
Sau3AI GATC 2 cut(s) 195, 282
Sau96I GGNCC 2 cut(s) 323, 503
SetI ASST 3 cut(s) 31, 67, 135
SfaNI GCATC 2 cut(s) 130, 397
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 364
SmlI CTYRAG 4 cut(s) 296, 364, 427, 526
SmoI CTYRAG 4 cut(s) 296, 364, 427, 526
Sse9I AATT 7 cut(s) 15, 222, 248, 272, 376, 452, 516
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 151, 418
TaqI TCGA 1 cut(s) 365
TasI AATT 7 cut(s) 15, 222, 248, 272, 376, 452, 516
TfiI GAWTC 2 cut(s) 88, 307
Tru1I TTAA 3 cut(s) 251, 375, 420
Tru9I TTAA 3 cut(s) 251, 375, 420
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 3 cut(s) 19, 207, 511
Tsp45I GTSAC 3 cut(s) 19, 207, 511
TspDTI ATGAA 3 cut(s) 320, 469, 477
TspGWI ACGGA 3 cut(s) 201, 208, 318
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 2 cut(s) 272, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.