Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Reverse (-)

5146910 .. 5147650

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGGTAATAATTGATGTATGGGGGCATGAATTTACCCTGGAAGTAGGTCTCAAAGAATCAGTTGTTGAAATCAAAAGGAAGATGGAACAGCTCTTGGGCATCCCAATGGCTTCACAAACCCTAGCAGTATGTGGATGGGAGTTGGTAGATGGACTAGACATGGAAGATTATCCAATTGTCACACCAGGTACAAAAATCGACCTCACCGTCAAATCCATGGAACCGACTACCATTCCGGTTATCATAAAAATTTCAGAGAAGCAGCACCAGATACAAGTGAGTAGAACAGAAACCGTGTACAGCCTTAAAGAGAAAATCCACATTATTGATGGCACACCCATCAAAAGAATTTCTCTCTTTTTCTGTGGAATTGAGTTGGAAAACGATTTTTGCAACTTGAGTGAGTACGGTGTTAATGAATTTTCCGAGATACTTTTGTTGCTCAAGACCATGAATCGAATAAAGAGTGACCCTCCGTCGAGGAGGTTGAGTCTTGTGGTTCAAACATCCTCGAGTTTGCTCAATGCGACCAGCATTCCGGTGAGAATCAAGGACTCGAACACAGTTAATGAGCTGAGGCAACTGCTTCTGTGCAGAAAACTTCTTCCGATTGACGATTATTTGTTCATTCATAGGCAGACGACTATGCGAGAAAACTGCAGCCTCAGGTCGCATGGTGTGGAAGATGGAGATTCCATATACGTATTCAAGGGGACAGTCCATCGCAGCGGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

247

Amino Acids

27.99

Weight (kDa)

6.1

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	9 - 72	1.1e-07	Ubiquitin family
ubiquitin	PF00240	83 - 150	8.6e-11	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AciI	CCGC	1 cut(s)	732
AcsI	RAATTY	4 cut(s)	32, 252, 351, 422
AfaI	GTAC	3 cut(s)	193, 302, 410
AgsI	TTSAA	3 cut(s)	71, 506, 712
AhdI	GACNNNNNGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	39, 187
AluBI	AGCT	2 cut(s)	94, 577
AluI	AGCT	2 cut(s)	94, 577
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	514
ApeKI	GCWGC	3 cut(s)	265, 663, 729
ApoI	RAATTY	4 cut(s)	32, 252, 351, 422
AsuHPI	GGTGA	2 cut(s)	199, 556
AvaI	CYCGRG	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	425, 458
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	277, 675
BccI	CCATC	7 cut(s)	79, 132, 146, 326, 350, 683, 732
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciT130I	CCWGG	2 cut(s)	41, 189
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	125, 158
BfmI	CTRYAG	1 cut(s)	661
BisI	GCNGC	3 cut(s)	266, 664, 730
BlsI	GCNGC	3 cut(s)	267, 665, 731
Bme1390I	CCNGG	2 cut(s)	41, 189
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	2 cut(s)	41, 189
BmsI	GCATC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
Bpu10I	CCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	421, 431
BsaAI	YACGTR	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	39, 219
BsaWI	WCCGGW	2 cut(s)	238, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bse21I	CCTNAGG	1 cut(s)	668
BseBI	CCWGG	2 cut(s)	41, 189
BseDI	CCNNGG	2 cut(s)	39, 219
BseGI	GGATG	3 cut(s)	102, 143, 509
BseMII	CTCAG	2 cut(s)	569, 682
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	277, 675
BsgI	GTGCAG	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	239, 542
BslFI	GGGAC	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	730
BsmI	GAATGC	1 cut(s)	537
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	514
Bsp1407I	TGTACA	1 cut(s)	300
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	1 cut(s)	732
BspCNI	CTCAG	2 cut(s)	570, 681
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	39, 219
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	41, 189
Bst4CI	ACNGT	5 cut(s)	211, 298, 413, 568, 721
BstAUI	TGTACA	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	578, 668
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	102, 143, 509
BstMAI	GTCTC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	41, 189
BstSCI	CCNGG	2 cut(s)	39, 187
BstSFI	CTRYAG	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	706
BstV1I	GCAGC	2 cut(s)	277, 675
Bsu36I	CCTNAGG	1 cut(s)	668
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	710
BtsCI	GGATG	3 cut(s)	102, 143, 509
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	192, 301, 409
CviAII	CATG	5 cut(s)	29, 163, 220, 454, 677
CviJI	RGCY	5 cut(s)	94, 113, 306, 577, 666
CviKI_1	RGCY	5 cut(s)	94, 113, 306, 577, 666
CviQI	GTAC	3 cut(s)	192, 301, 409
DdeI	CTNAG	2 cut(s)	578, 668
DrdI	GACNNNNNNGTC	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	478
Eco105I	TACGTA	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	39, 187
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	32, 166, 223, 457, 680
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	5 cut(s)	28, 162, 219, 453, 676
Fnu4HI	GCNGC	3 cut(s)	266, 664, 730
FokI	GGATG	3 cut(s)	89, 150, 496
Fsp4HI	GCNGC	3 cut(s)	266, 664, 730
FspBI	CTAG	2 cut(s)	125, 158
GluI	GCNGC	3 cut(s)	266, 664, 730
HapII	CCGG	2 cut(s)	239, 542
Hin1II	CATG	5 cut(s)	32, 166, 223, 457, 680
HinfI	GANTC	6 cut(s)	59, 457, 493, 549, 557, 695
HpaII	CCGG	2 cut(s)	239, 542
HphI	GGTGA	2 cut(s)	199, 556
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	259, 430, 612
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	484
HpyCH4III	ACNGT	5 cut(s)	211, 298, 413, 568, 721
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	3 cut(s)	396, 597, 663
HpyF3I	CTNAG	2 cut(s)	578, 668
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	5 cut(s)	32, 166, 223, 457, 680
LpnPI	CCDG	9 cut(s)	26, 53, 174, 201, 252, 284, 547, 555, 655
Lsp1109I	GCAGC	2 cut(s)	277, 675
LweI	GCATC	1 cut(s)	111
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	2 cut(s)	125, 158
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	181, 470
MboII	GAAGA	4 cut(s)	94, 179, 599, 698
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	7 cut(s)	12, 32, 177, 252, 351, 372, 422
MlyI	GAGTC	2 cut(s)	502, 551
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	215, 477, 480, 486, 523, 573, 677
MseI	TTAA	4 cut(s)	309, 417, 570, 739
MslI	CAYNNNNRTG	2 cut(s)	107, 542
MspA1I	CMGCKG	1 cut(s)	732
MspI	CCGG	2 cut(s)	239, 542
MspR9I	CCNGG	2 cut(s)	41, 189
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	41, 189
NcoI	CCATGG	1 cut(s)	219
NlaIII	CATG	5 cut(s)	32, 166, 223, 457, 680
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	181, 470
PaeR7I	CTCGAG	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	59, 457, 549, 695
PkrI	GCNGC	3 cut(s)	267, 665, 731
PleI	GAGTC	2 cut(s)	501, 551
PpsI	GAGTC	2 cut(s)	501, 551
Ppu21I	YACGTR	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	39, 187
PspGI	CCWGG	2 cut(s)	39, 187
PspN4I	GGNNCC	1 cut(s)	225
PspXI	VCTCGAGB	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	665
RsaI	GTAC	3 cut(s)	193, 302, 410
RsaNI	GTAC	3 cut(s)	192, 301, 409
RseI	CAYNNNNRTG	2 cut(s)	107, 542
SaqAI	TTAA	4 cut(s)	309, 417, 570, 739
SatI	GCNGC	3 cut(s)	266, 664, 730
SchI	GAGTC	2 cut(s)	502, 551
ScrFI	CCNGG	2 cut(s)	41, 189
SetI	ASST	8 cut(s)	52, 96, 193, 207, 491, 579, 674, 708
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	107, 542
SmlI	CTYRAG	3 cut(s)	400, 446, 514
SmoI	CTYRAG	3 cut(s)	400, 446, 514
SnaBI	TACGTA	1 cut(s)	706
Sse9I	AATT	7 cut(s)	12, 32, 177, 252, 351, 372, 422
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	2 cut(s)	125, 158
StyD4I	CCNGG	2 cut(s)	39, 187
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	5 cut(s)	211, 298, 413, 568, 721
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	5 cut(s)	201, 460, 482, 515, 560
TasI	AATT	7 cut(s)	12, 32, 177, 252, 351, 372, 422
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	4 cut(s)	59, 457, 549, 695
Tru1I	TTAA	4 cut(s)	309, 417, 570, 739
Tru9I	TTAA	4 cut(s)	309, 417, 570, 739
TseFI	GTSAC	2 cut(s)	181, 470
TseI	GCWGC	3 cut(s)	265, 663, 729
Tsp45I	GTSAC	2 cut(s)	181, 470
TspDTI	ATGAA	5 cut(s)	45, 435, 470, 619, 623
TspGWI	ACGGA	1 cut(s)	468
XapI	RAATTY	4 cut(s)	32, 252, 351, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	514
XspI	CTAG	2 cut(s)	125, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.