Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004095

Physical Location & Seq

Genomic Coordinates Reverse (-)

33636108 .. 33636866

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGAGTCATCATTATTGATACCTGGGGACATGCATTCACCATAGAAGTGGGTCTGAAAGAACCTGTTCTGGACATCAAAAGGAAGGTGGAACAATTCTTGGGTGTCCCCGCGGCTTCACAAACCCTTGCAGTGTCTGAATGGGAGTTAGAAGACGGACTAGACATGGAAGATTATCCAATTGTCACTGAAGGTACGAAAATTAATCTCACCATCAAATGTATGGAACCTCATGTAAATCAGTCCAGTAAGATTCAGATTATCGTAAAATCTTCAACAGCACAACATCAGTTAGAGGTATTCAAAACAGAGACAGTTGGTAGTCTTAAAGAAAAAATCCACATTATTGAAGGTACACCAATCAAAAGAATTTCACTCTTCTTTTCTGGAATTGAGTTGGAAGAAGATTTTCGCAAATTAAGTGAGTACGGGATATGCGAATTTTCTGAGATTGCTTTGTTCCTCAAGACCATGAATTGTCTCAGAGACGGCCCTCCCTCAAGAAGACTGAGTATAGTGGTACAAACTTCCTCGAGTTTACTTAATTCAGCAAGTATTCCTTTGAAAATGGAGGATTCAAGCACAGTTAATGACTTGAGGCTGTTACTTTTGAGCAGTAAATTTCTTCCTGCTGATGATTATTTGTTCATACACAAGCAGAGGACCATGCGTGATAATTGTAGCCTCAAGTGGCATGGTGTAGAAGATGGAGATTCTATATATGTATTTAAAGGGACTGTCTATCGCAGTGGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

253

Amino Acids

28.53

Weight (kDa)

5.6

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	10 - 73	6e-08	Ubiquitin family
ubiquitin	PF00240	87 - 156	6.2e-13	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32350
fragaria_vesca	FvH4_6g26390 FvH4_6g43480
malus_domestica	MD01G1026100.v1.1 MD09G1246300.v1.1 MD17G1239100.v1.1
prunus_persica	Prupe.3G131400_v2.0.a1 Prupe.3G219500_v2.0.a1
pyrus_communis	pycom01g05440
rosa_chinensis	RchiOBHm_Chr2g0159951
rosa_laevigata	RLG00000018925 RLG00000021187 RLG00000036498
rosa_multiflora	Rmu_sc0000007.1_g000027 Rmu_sc0000909.1_g000026 Rmu_sc0002508.1_g000038 Rmu_sc0012797.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090130
rosa_rugosa	Rorug02G0270000 Rorug02G0479400
rosa_samantha	Rh2AG322200 Rh2AG546000 Rh2BG330400 Rh2BG559300 Rh2CG310300 Rh2CG529400 Rh2DG349700 Rh2DG568000 Rh5BG512100 Rh5CG535800
rosa_wichuraiana	Rw2G026130 Rw2G045160 Rw5G045470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 113
AcsI	RAATTY	3 cut(s)	369, 440, 620
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	4 cut(s)	196, 355, 428, 522
AgsI	TTSAA	5 cut(s)	276, 304, 350, 565, 579
AjnI	CCWGG	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	305, 480, 485
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	490
ApoI	RAATTY	3 cut(s)	369, 440, 620
AseI	ATTAAT	1 cut(s)	204
Asp700I	GAANNNNTTC	2 cut(s)	66, 408
AspS9I	GGNCC	2 cut(s)	491, 663
AsuHPI	GGTGA	2 cut(s)	31, 202
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	663
BbsI	GAAGAC	2 cut(s)	159, 511
BccI	CCATC	2 cut(s)	221, 701
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	305, 480, 485
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	491, 663
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	25
BpiI	GAAGAC	2 cut(s)	159, 511
BpuEI	CTTGAG	4 cut(s)	449, 484, 616, 671
BsaJI	CCNNGG	2 cut(s)	24, 111
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	24, 111
BseMII	CTCAG	3 cut(s)	438, 496, 500
BseNI	ACTGG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	532
BslFI	GGGAC	3 cut(s)	42, 92, 748
BsmAI	GTCTC	3 cut(s)	305, 480, 485
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	3 cut(s)	42, 92, 748
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	532
BspACI	CCGC	2 cut(s)	111, 113
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	3 cut(s)	439, 495, 501
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	24, 111
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	316, 586, 739
Bst6I	CTCTTC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	447, 482, 509
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	113
BstMAI	GTCTC	3 cut(s)	305, 480, 485
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	113
BstV2I	GAAGAC	2 cut(s)	159, 511
BstXI	CCANNNNNNTGG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	2 cut(s)	138, 754
BtsIMutI	CAGTG	3 cut(s)	138, 186, 754
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	491, 663
Cfr42I	CCGCGG	1 cut(s)	114
Csp6I	GTAC	4 cut(s)	195, 354, 427, 521
CviAII	CATG	6 cut(s)	32, 166, 233, 472, 667, 695
CviJI	RGCY	4 cut(s)	116, 492, 601, 684
CviKI_1	RGCY	4 cut(s)	116, 492, 601, 684
CviQI	GTAC	4 cut(s)	195, 354, 427, 521
DdeI	CTNAG	3 cut(s)	447, 482, 509
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	6 cut(s)	35, 169, 236, 475, 670, 698
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	3 cut(s)	42, 92, 748
FatI	CATG	6 cut(s)	31, 165, 232, 471, 666, 694
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	492
Hin1II	CATG	6 cut(s)	35, 169, 236, 475, 670, 698
HinfI	GANTC	4 cut(s)	6, 253, 575, 713
HphI	GGTGA	2 cut(s)	31, 202
Hpy166II	GTNNAC	2 cut(s)	356, 539
Hpy188I	TCNGA	5 cut(s)	57, 139, 258, 448, 485
Hpy188III	TCNNGA	4 cut(s)	71, 387, 466, 501
Hpy8I	GTNNAC	2 cut(s)	356, 539
HpyAV	CCTTC	3 cut(s)	79, 185, 344
HpyCH4III	ACNGT	3 cut(s)	316, 586, 739
HpyCH4V	TGCA	2 cut(s)	35, 131
HpyF3I	CTNAG	3 cut(s)	447, 482, 509
Hsp92II	CATG	6 cut(s)	35, 169, 236, 475, 670, 698
KspI	CCGCGG	1 cut(s)	114
LpnPI	CCDG	7 cut(s)	10, 37, 56, 78, 259, 372, 642
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	184, 603
MboII	GAAGA	9 cut(s)	164, 182, 264, 370, 413, 416, 516, 617, 716
MfeI	CAATTG	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	2 cut(s)	66, 408
MseI	TTAA	7 cut(s)	204, 327, 419, 543, 588, 729, 757
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	113
NlaIII	CATG	6 cut(s)	35, 169, 236, 475, 670, 698
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	66, 408
PfeI	GAWTC	3 cut(s)	253, 575, 713
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	491, 663
PspXI	VCTCGAGB	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	196, 355, 428, 522
RsaNI	GTAC	4 cut(s)	195, 354, 427, 521
RseI	CAYNNNNRTG	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	7 cut(s)	204, 327, 419, 543, 588, 729, 757
SatI	GCNGC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	491, 663
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	7 cut(s)	26, 67, 90, 196, 232, 300, 355
Sfr274I	CTCGAG	1 cut(s)	532
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	5 cut(s)	464, 499, 532, 595, 686
SmoI	CTYRAG	5 cut(s)	464, 499, 532, 595, 686
SsiI	CCGC	2 cut(s)	111, 113
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	316, 586, 739
TaqI	TCGA	1 cut(s)	533
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	253, 575, 713
Tru1I	TTAA	7 cut(s)	204, 327, 419, 543, 588, 729, 757
Tru9I	TTAA	7 cut(s)	204, 327, 419, 543, 588, 729, 757
TscAI	CASTG	3 cut(s)	138, 193, 754
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	488, 637
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	138, 193, 754
VpaK11BI	GGWCC	1 cut(s)	663
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	3 cut(s)	369, 440, 620
XceI	RCATGY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	532
XmnI	GAANNNNTTC	2 cut(s)	66, 408
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.