Rh2DG349800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015302
Physical Location & Seq
Reverse (-)
48984611 .. 48985710
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG349800.1

Sequence Viewer

Length: 300 bp
ATGAAGGTTGTTGTGGAGAATTTGACAGGAACTCTCTTCCATGTCCAAGTCCGCAACGATGCCACAGTTGCTGATCTCAAGAGGGAAATCGAAACCCAGCAGAAACTCCCTTATGACCGTCTCATCTTGATTCTTCATGCTGATCATCATCGTAGCTATACCATCAACGACAATGGCGATGGGGTTTCGCTTATTGATTATGGAGTCCAAGATGGCTCCCACATCTATATCTTCTTCAATCCCCTTGATGACCATGGCTCCTCCTCCGCTACTCAGCGATTCTTTTTTGGGGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

99

Amino Acids

11.25

Weight (kDa)

5.31

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 4 - 45 7.8e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015302)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32360
malus_domestica MD07G1098300.v1.1
prunus_persica Prupe.2G122300_v2.0.a1 Prupe.3G131300_v2.0.a1
pyrus_communis pycom12652g00060
rosa_chinensis RchiOBHm_Chr2g0126901
rosa_laevigata RLG00000018926
rosa_multiflora Rmu_co8178202.1_g000001 Rmu_sc0000007.1_g000028
rosa_roxburghii Rroxscaffold_2G00116940
rosa_rugosa Rorug02G0270000
rosa_samantha Rh2AG322300 Rh2BG330500 Rh2CG310400 Rh2DG349800
rosa_wichuraiana Rw2G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 2 cut(s) 52, 267
AcsI RAATTY 1 cut(s) 19
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 71
ApoI RAATTY 1 cut(s) 19
BccI CCATC 3 cut(s) 170, 173, 206
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 217, 259
BmsI GCATC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 147
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 250, 253
BseYI CCCAGC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 73, 142
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 2 cut(s) 52, 267
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 217, 259
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 73, 142
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 67, 119
Bst6I CTCTTC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 253
BstKTI GATC 2 cut(s) 76, 145
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 73, 142
BstMWI GCNNNNNNNGC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 71
CviAII CATG 3 cut(s) 41, 137, 254
CviJI RGCY 3 cut(s) 156, 216, 258
CviKI_1 RGCY 3 cut(s) 156, 216, 258
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 75, 144
DpnII GATC 2 cut(s) 73, 142
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 3 cut(s) 44, 140, 257
FaiI YATR 7 cut(s) 42, 114, 138, 159, 201, 228, 255
FatI CATG 3 cut(s) 40, 136, 253
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 100
Hin1II CATG 3 cut(s) 44, 140, 257
HinfI GANTC 3 cut(s) 130, 204, 279
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 79, 127
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 67, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 3 cut(s) 44, 140, 257
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 73, 142
LmnI GCTCC 2 cut(s) 221, 263
LpnPI CCDG 2 cut(s) 12, 110
LweI GCATC 1 cut(s) 49
MalI GATC 2 cut(s) 75, 144
MboI GATC 2 cut(s) 73, 142
MboII GAAGA 4 cut(s) 28, 125, 223, 226
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 3 cut(s) 75, 271, 274
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 253
NdeII GATC 2 cut(s) 73, 142
NlaIII CATG 3 cut(s) 44, 140, 257
NlaIV GGNNCC 2 cut(s) 217, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 2 cut(s) 130, 279
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 217, 259
PstNI CAGNNNCTG 1 cut(s) 71
Sau3AI GATC 2 cut(s) 73, 142
SchI GAGTC 1 cut(s) 213
SetI ASST 2 cut(s) 9, 158
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 19
SsiI CCGC 2 cut(s) 52, 267
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 67, 119
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 19
TfiI GAWTC 2 cut(s) 130, 279
TspDTI ATGAA 2 cut(s) 17, 125
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.