Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0025334

Physical Location & Seq

Genomic Coordinates Reverse (-)

61086204 .. 61086925

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCATTTTGTTTCAGAAAATCTAGGATTGTCAAGCTTTGGTCCCAAGGCAGGGTTTCCATGCTCTGAGTTTTGGACTGGCACATTTCTCTTCAGAGGCACCGATACCCGCAAGACTTTTACCAGCCATCTCTACAAGGCTTTGGATGAGAAGAAGATTGATACCTACATAGATTACAATCTTGAGCGGGGAGATGAAATCGCACCTGCCCTTTTAAAAGCAATCGAGGGATCAATGATTTCCGTGATTGTTTTCTCAGAAAACTATGCTTCTTCTCGATGGTGCTTGGACGAACTTGTGCATATACTGGAATGCAGGGAAAAGTATGGACAACATGTGATACCCATCTTTTACAATACAGTTGTATCAGATATACGACACCAGAGCGGTCGTTATGAACTTGAAGAACATTTCAAGGATAGAACAGAGTCTGAGCGTCTTAAATGGAAGGTTGCTTTGACAAAAGCAGCTAATCTTTCTGGGTTTGAATCAACTTCAACCAGGCAACTCTTGCCTGTGCAACTTGTATACTATTTCTACTTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

183

Amino Acids

21.07

Weight (kDa)

6.08

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	29 - 168	3.2e-46	TIR domain
TIR_2	PF13676	38 - 120	3.1e-12	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025334)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020111
rosa_multiflora	Rmu_sc0006012.1_g000016 Rmu_sc0036448.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	2 cut(s)	187, 387
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	3 cut(s)	109, 187, 387
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	50, 51
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	404, 415, 488, 498
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	36, 470
AluI	AGCT	2 cut(s)	36, 470
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	135, 273, 353
BciT130I	CCWGG	1 cut(s)	502
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	43, 100
BmrFI	CCNGG	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	203
BsaBI	GATNNNNATC	2 cut(s)	177, 344
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 51
Bse1I	ACTGG	2 cut(s)	82, 312
Bse8I	GATNNNNATC	2 cut(s)	177, 344
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	2 cut(s)	177, 344
BseLI	CCNNNNNNNGG	2 cut(s)	50, 51
BseMII	CTCAG	3 cut(s)	57, 270, 423
BseNI	ACTGG	2 cut(s)	82, 312
BseXI	GCAGC	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	50, 51
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	3 cut(s)	109, 187, 387
BspCNI	CTCAG	3 cut(s)	58, 269, 424
BspLI	GGNNCC	2 cut(s)	43, 100
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	98
BsrBI	CCGCTC	2 cut(s)	187, 387
BsrI	ACTGG	2 cut(s)	82, 312
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	230
BssNAI	GTATAC	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	66, 256, 432
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	1 cut(s)	425
CviAII	CATG	2 cut(s)	60, 335
CviJI	RGCY	4 cut(s)	36, 126, 140, 470
CviKI_1	RGCY	4 cut(s)	36, 126, 140, 470
DdeI	CTNAG	3 cut(s)	66, 256, 432
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
DraI	TTTAAA	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	63, 338
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	59, 334
FauI	CCCGC	2 cut(s)	116, 180
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	468
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	63, 338
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	428, 488
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	6 cut(s)	16, 67, 95, 259, 370, 433
Hpy188III	TCNNGA	3 cut(s)	182, 276, 546
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	4, 301, 315, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	3 cut(s)	66, 256, 432
Hsp92II	CATG	2 cut(s)	63, 338
Kzo9I	GATC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	232
MbiI	CCGCTC	2 cut(s)	187, 387
MboI	GATC	1 cut(s)	230
MboII	GAAGA	5 cut(s)	82, 163, 166, 264, 416
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	2 cut(s)	89, 220
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	215, 441
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	511
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	63, 338
NlaIV	GGNNCC	2 cut(s)	43, 100
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	214
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	43, 100
PspPI	GGNCC	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	215, 441
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	502
SetI	ASST	5 cut(s)	38, 167, 208, 453, 472
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	3 cut(s)	109, 187, 387
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	225, 277
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	215, 441
Tru9I	TTAA	2 cut(s)	215, 441
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	210, 411
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.