Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006012.1

Orthogroup ID

OG0025334

Physical Location & Seq

Genomic Coordinates Reverse (-)

74826 .. 75940

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006012.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgcattttgtttcagaagagctaagattgtcaagctttggtcccaagacagggtttcatgctctgagtttgggacttgcacatttctgtgatatggcctcttcttcttcttcttcttccacaaacatcgccccaaaagagaagtatgacgtctttctcagcttcagaggcaccgatacccgcaagacttttaccagccatatctacaaggctttggatgataagaagattaatacctacatagattacaatcttgagcggggagaagaaattgcacctgcccttctaaaagcaatcgagggggaaaaatataaacaacatgtgctacccatcttatatgaaacagctgtatctgatatacgacaccagagcgggagttacgaacttgatgaacgtttcaaggatagaacagggtctgagcgtctcatgtggaaggttgctttgacaaaagcagctaatctttctggatttgaatcaacttcattcagttctgaatcaaaacgcttcgttggagttggaagtcgggttcagcaaattgaatcgttagtatgtattgttcctcgagatgatcgtgttcgctccgttggggtatgggaggtattgggaagaccacccttgctgatgctgtttttcaaagtctctcttcccaattcgatgctcgctgctttcttgaagatgttagagaacgatctgggacccaaaaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

236

Amino Acids

26.57

Weight (kDa)

8.42

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025334)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020111
rosa_multiflora	Rmu_sc0006012.1_g000016 Rmu_sc0036448.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	2 cut(s)	259, 372
AciI	CCGC	3 cut(s)	181, 259, 372
AclI	AACGTT	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	50, 51
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	400, 473, 539, 634, 673
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	5 cut(s)	22, 36, 162, 347, 455
AluI	AGCT	5 cut(s)	22, 36, 162, 347, 455
Alw26I	GTCTC	2 cut(s)	428, 643
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	452, 662
AseI	ATTAAT	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	41, 695
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	2 cut(s)	41, 695
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	464, 649
BccI	CCATC	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	428, 643
BfaI	CTAG	1 cut(s)	709
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	453, 663
BlsI	GCNGC	2 cut(s)	454, 664
Bme18I	GGWCC	2 cut(s)	41, 695
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	2 cut(s)	41, 695
BmiI	GGNNCC	4 cut(s)	43, 172, 696, 697
BmsI	GCATC	2 cut(s)	612, 645
BpiI	GAAGAC	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	249, 472
BsaHI	GRCGYC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 51
Bse8I	GATNNNNATC	2 cut(s)	249, 472
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	2 cut(s)	249, 472
BseLI	CCNNNNNNNGG	2 cut(s)	50, 51
BseMII	CTCAG	3 cut(s)	56, 172, 408
BseXI	GCAGC	2 cut(s)	464, 649
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	561
BslFI	GGGAC	2 cut(s)	27, 87
BslI	CCNNNNNNNGG	2 cut(s)	50, 51
BsmAI	GTCTC	2 cut(s)	428, 643
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	27, 87
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	568, 688
BspACI	CCGC	3 cut(s)	181, 259, 372
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	57, 171, 409
BspLI	GGNNCC	4 cut(s)	43, 172, 696, 697
BspMI	ACCTGC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	2 cut(s)	259, 372
BssMI	GATC	2 cut(s)	568, 688
BssNI	GRCGYC	1 cut(s)	150
Bst6I	CTCTTC	3 cut(s)	12, 106, 648
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	4 cut(s)	23, 65, 158, 417
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	571, 691
BstMAI	GTCTC	2 cut(s)	428, 643
BstMBI	GATC	2 cut(s)	568, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	464, 649
BstV2I	GAAGAC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	660
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	41, 695
CseI	GACGC	1 cut(s)	410
CviAII	CATG	3 cut(s)	59, 320, 427
CviJI	RGCY	8 cut(s)	22, 36, 98, 162, 198, 212, 347, 455
CviKI_1	RGCY	8 cut(s)	22, 36, 98, 162, 198, 212, 347, 455
DdeI	CTNAG	4 cut(s)	23, 65, 158, 417
DpnI	GATC	2 cut(s)	570, 690
DpnII	GATC	2 cut(s)	568, 688
Eam1104I	CTCTTC	3 cut(s)	12, 106, 648
EarI	CTCTTC	3 cut(s)	12, 106, 648
Eco47I	GGWCC	2 cut(s)	41, 695
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	3 cut(s)	62, 323, 430
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	2 cut(s)	27, 87
FatI	CATG	3 cut(s)	58, 319, 426
FauI	CCCGC	3 cut(s)	188, 252, 365
Fnu4HI	GCNGC	2 cut(s)	453, 663
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	453, 663
FspBI	CTAG	1 cut(s)	709
GluI	GCNGC	2 cut(s)	453, 663
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	62, 323, 430
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	473, 494, 539
Hpy188I	TCNGA	6 cut(s)	16, 66, 167, 355, 418, 493
Hpy188III	TCNNGA	4 cut(s)	254, 465, 563, 670
HpyAV	CCTTC	2 cut(s)	293, 427
HpyCH4IV	ACGT	2 cut(s)	150, 394
HpyCH4V	TGCA	3 cut(s)	4, 80, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	4 cut(s)	23, 65, 158, 417
HpySE526I	ACGT	2 cut(s)	150, 394
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	62, 323, 430
KflI	GGGWCCC	1 cut(s)	695
Kzo9I	GATC	2 cut(s)	568, 688
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	584
LpnPI	CCDG	7 cut(s)	36, 208, 291, 380, 396, 450, 677
Lsp1109I	GCAGC	2 cut(s)	464, 649
LweI	GCATC	2 cut(s)	612, 645
MaeI	CTAG	1 cut(s)	709
MaeII	ACGT	2 cut(s)	150, 394
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	570, 690
MbiI	CCGCTC	2 cut(s)	259, 372
MboI	GATC	2 cut(s)	568, 688
MluCI	AATT	3 cut(s)	270, 534, 649
MmeI	TCCRAC	2 cut(s)	490, 496
MnlI	CCTC	5 cut(s)	109, 161, 292, 570, 589
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	2 cut(s)	568, 688
NlaIII	CATG	3 cut(s)	62, 323, 430
NlaIV	GGNNCC	4 cut(s)	43, 172, 696, 697
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	561
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PfeI	GAWTC	3 cut(s)	473, 494, 539
PkrI	GCNGC	2 cut(s)	454, 664
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	695
PspN4I	GGNNCC	4 cut(s)	43, 172, 696, 697
PspPI	GGNCC	2 cut(s)	41, 695
PspPPI	RGGWCCY	1 cut(s)	695
PsrI	GAACNNNNNNTAC	2 cut(s)	540, 572
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	453, 663
Sau3AI	GATC	2 cut(s)	568, 688
Sau96I	GGNCC	2 cut(s)	41, 695
SfaNI	GCATC	2 cut(s)	612, 645
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	41, 695
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	254, 561
SmoI	CTYRAG	2 cut(s)	254, 561
Sse9I	AATT	3 cut(s)	270, 534, 649
SsiI	CCGC	3 cut(s)	181, 259, 372
SspMI	CTAG	1 cut(s)	709
TaiI	ACGT	2 cut(s)	153, 397
TaqI	TCGA	3 cut(s)	297, 562, 653
TasI	AATT	3 cut(s)	270, 534, 649
TfiI	GAWTC	3 cut(s)	473, 494, 539
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	2 cut(s)	452, 662
TspDTI	ATGAA	4 cut(s)	47, 354, 405, 471
TspGWI	ACGGA	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	41, 695
VspI	ATTAAT	1 cut(s)	231
XceI	RCATGY	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	561
XspI	CTAG	1 cut(s)	709
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.