Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036448.1

Orthogroup ID

OG0025334

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2589

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

caatttctgctgctgttagcctgctaccaaccactcttatcccaacaatttctgaagatcagcattataattatctctgtgttttctttcctctcccacagtttgatgcattttgtttcagaagagctaagattgtcaagctttggtcccaagacagggtttcatgctctgagtttgggacttgcacatttctgtgatatggcctcttcttcttcttcttcttccacaaacatcgccccaaaagagaagtatgacgtctttctcagcttcagaggcaccgatacccgcaagacttttaccagccatatctacaaggctttggatgataagaagattaatacctacatagattacaatcttgagcggggagaagaaattgcacctgcccttctaaaagcaatcgagggggaaaaatataaacaacatgtgctacccatcttatatgaaacagctgtatctgatatacgacaccagagcgggagttacgaacttgatgaacgtttcaaggatagaacagggtctgagcgtctcatgtggaaggttgctttgacaaaagcagctaatctttctggatttgaatcaacttcattcagttctgaatcaaaacgcttcgttggagttggaagtcgggttcagcaaattgaatcgttactatgtattgttcctcgagatgatcgtgttcgctccgttggggtatgggaggtattgggaagaccacccttgctgatgctgtttttcaaagtctctcttcccaattcgatgctcgctgctttcttgaagatgttagagaacgatctgggacccaaaaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

271

Amino Acids

30.59

Weight (kDa)

8.65

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025334)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020111
rosa_multiflora	Rmu_sc0006012.1_g000016 Rmu_sc0036448.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	275
AccBSI	CCGCTC	2 cut(s)	364, 477
AciI	CCGC	3 cut(s)	286, 364, 477
AclI	AACGTT	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	74, 253
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	155, 156
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	5 cut(s)	505, 578, 644, 739, 778
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	5 cut(s)	127, 141, 267, 452, 560
AluI	AGCT	5 cut(s)	127, 141, 267, 452, 560
Alw26I	GTCTC	2 cut(s)	533, 748
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	10, 557, 767
AseI	ATTAAT	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	146, 800
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	146, 800
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	569, 754
BccI	CCATC	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	533, 748
BfaI	CTAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	11, 558, 768
BlsI	GCNGC	3 cut(s)	12, 559, 769
Bme18I	GGWCC	2 cut(s)	146, 800
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	2 cut(s)	146, 800
BmiI	GGNNCC	4 cut(s)	148, 277, 801, 802
BmsI	GCATC	3 cut(s)	96, 717, 750
BpiI	GAAGAC	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	2 cut(s)	354, 577
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 156
Bse8I	GATNNNNATC	2 cut(s)	354, 577
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	2 cut(s)	354, 577
BseLI	CCNNNNNNNGG	2 cut(s)	155, 156
BseMII	CTCAG	3 cut(s)	161, 277, 513
BseXI	GCAGC	2 cut(s)	569, 754
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	666
BslFI	GGGAC	2 cut(s)	132, 192
BslI	CCNNNNNNNGG	2 cut(s)	155, 156
BsmAI	GTCTC	2 cut(s)	533, 748
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	132, 192
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	57, 673, 793
BspACI	CCGC	3 cut(s)	286, 364, 477
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	162, 276, 514
BspLI	GGNNCC	4 cut(s)	148, 277, 801, 802
BspMI	ACCTGC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	275
BsrBI	CCGCTC	2 cut(s)	364, 477
BssMI	GATC	3 cut(s)	57, 673, 793
BssNI	GRCGYC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	3 cut(s)	117, 211, 753
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	22, 765
BstDEI	CTNAG	4 cut(s)	128, 170, 263, 522
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	60, 676, 796
BstMAI	GTCTC	2 cut(s)	533, 748
BstMBI	GATC	3 cut(s)	57, 673, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	569, 754
BstV2I	GAAGAC	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	22, 765
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	146, 800
CseI	GACGC	1 cut(s)	515
CviAII	CATG	3 cut(s)	164, 425, 532
CviJI	RGCY	9 cut(s)	20, 127, 141, 203, 267, 303, 317, 452, 560
CviKI_1	RGCY	9 cut(s)	20, 127, 141, 203, 267, 303, 317, 452, 560
DdeI	CTNAG	4 cut(s)	128, 170, 263, 522
DpnI	GATC	3 cut(s)	59, 675, 795
DpnII	GATC	3 cut(s)	57, 673, 793
Eam1104I	CTCTTC	3 cut(s)	117, 211, 753
EarI	CTCTTC	3 cut(s)	117, 211, 753
Eco47I	GGWCC	2 cut(s)	146, 800
Eco57I	CTGAAG	2 cut(s)	74, 253
Eco88I	CYCGRG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	800
EcoT22I	ATGCAT	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	167, 428, 535
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	2 cut(s)	132, 192
FatI	CATG	3 cut(s)	163, 424, 531
FauI	CCCGC	3 cut(s)	293, 357, 470
Fnu4HI	GCNGC	3 cut(s)	11, 558, 768
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	11, 558, 768
FspBI	CTAG	1 cut(s)	814
GluI	GCNGC	3 cut(s)	11, 558, 768
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	167, 428, 535
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	578, 599, 644
Hpy188I	TCNGA	7 cut(s)	54, 121, 171, 272, 460, 523, 598
Hpy188III	TCNNGA	4 cut(s)	359, 570, 668, 775
HpyAV	CCTTC	2 cut(s)	398, 532
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	255, 499
HpyCH4V	TGCA	3 cut(s)	109, 185, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	4 cut(s)	128, 170, 263, 522
HpySE526I	ACGT	2 cut(s)	255, 499
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	167, 428, 535
KflI	GGGWCCC	1 cut(s)	800
Kzo9I	GATC	3 cut(s)	57, 673, 793
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	689
LpnPI	CCDG	8 cut(s)	34, 141, 313, 396, 485, 501, 555, 782
Lsp1109I	GCAGC	2 cut(s)	569, 754
LweI	GCATC	3 cut(s)	96, 717, 750
MaeI	CTAG	1 cut(s)	814
MaeII	ACGT	2 cut(s)	255, 499
MaeIII	GTNAC	2 cut(s)	482, 648
MalI	GATC	3 cut(s)	59, 675, 795
MbiI	CCGCTC	2 cut(s)	364, 477
MboI	GATC	3 cut(s)	57, 673, 793
MluCI	AATT	6 cut(s)	2, 47, 69, 375, 639, 754
MmeI	TCCRAC	2 cut(s)	595, 601
MnlI	CCTC	6 cut(s)	101, 214, 266, 397, 675, 694
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	3 cut(s)	57, 673, 793
NlaIII	CATG	3 cut(s)	167, 428, 535
NlaIV	GGNNCC	4 cut(s)	148, 277, 801, 802
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	666
PaqCI	CACCTGC	1 cut(s)	391
PciI	ACATGT	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	578, 599, 644
PkrI	GCNGC	3 cut(s)	12, 559, 769
PpuMI	RGGWCCY	1 cut(s)	800
PscI	ACATGT	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	336
PsiI	TTATAA	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	800
PspN4I	GGNNCC	4 cut(s)	148, 277, 801, 802
PspPI	GGNCC	2 cut(s)	146, 800
PspPPI	RGGWCCY	1 cut(s)	800
PstNI	CAGNNNCTG	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	11, 558, 768
Sau3AI	GATC	3 cut(s)	57, 673, 793
Sau96I	GGNCC	2 cut(s)	146, 800
SfaNI	GCATC	3 cut(s)	96, 717, 750
Sfr274I	CTCGAG	1 cut(s)	666
SinI	GGWCC	2 cut(s)	146, 800
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	359, 666
SmoI	CTYRAG	2 cut(s)	359, 666
Sse9I	AATT	6 cut(s)	2, 47, 69, 375, 639, 754
SsiI	CCGC	3 cut(s)	286, 364, 477
SspMI	CTAG	1 cut(s)	814
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	258, 502
TaqI	TCGA	3 cut(s)	402, 667, 758
TasI	AATT	6 cut(s)	2, 47, 69, 375, 639, 754
TfiI	GAWTC	3 cut(s)	578, 599, 644
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	3 cut(s)	10, 557, 767
TspDTI	ATGAA	4 cut(s)	152, 459, 510, 576
TspGWI	ACGGA	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	146, 800
VspI	ATTAAT	1 cut(s)	336
XceI	RCATGY	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	666
XspI	CTAG	1 cut(s)	814
ZraI	GACGTC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.