RLG00000021205

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020491
Physical Location & Seq
Forward (+)
72927465 .. 72928098
634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021205

Sequence Viewer

Length: 420 bp
ATGGCACCTGAATATGCTAAGAATGGGAACTTTTTGACAAAATCGGATGCCTACAGCTTTGGCGTTTTAGTTTTGGAAATTATAACAGGTCGAAAGAACTCTAGCTTCCGCGATTTTTCAAATCTTCAGAGTTATGTAAAGGATCATCAGTGGCGTAGATTTGAAGTTTTAAAGTGCATCCACATTGGGCTATTATGTGTTCAAGAAGCTCCTACTGATAGACCAACCATGTCTGAGGTTGTTATGATGCTAAATAGCTACACTCTTACCTCCCAGGTACCTTCACTTCCAGCATTTTTCGTCCGACAAGGAAGCTCTGCTCACTCGCAGCAGCTGGAGGCTTGCAGGGAAAGTTCTGCTGCTTCTGAGGTATCTCAATCAGTAAATGACGTTACAATAACCAAGCTTGATCCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

6.82

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 83 7.2e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020491)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160221
rosa_laevigata RLG00000021205
rosa_multiflora Rmu_sc0000403.1_g000006
rosa_roxburghii Rroxscaffold_2G00089950
rosa_samantha Rh2BG561100 Rh2CG531700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 2 cut(s) 4, 277
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 109
AclWI GGATC 2 cut(s) 150, 404
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 3 cut(s) 120, 164, 203
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 7 cut(s) 57, 105, 209, 258, 315, 334, 406
AluI AGCT 7 cut(s) 57, 105, 209, 258, 315, 334, 406
AlwI GGATC 2 cut(s) 150, 404
AlwNI CAGNNNCTG 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 328, 331, 359
Asp718I GGTACC 1 cut(s) 277
BanI GGYRCC 2 cut(s) 4, 277
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BbvI GCAGC 3 cut(s) 340, 343, 346
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 3 cut(s) 329, 332, 360
BlsI GCNGC 3 cut(s) 330, 333, 361
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 6, 279
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 37, 186, 237
BpmI CTGGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 52, 177
BseMII CTCAG 2 cut(s) 225, 357
BseXI GCAGC 3 cut(s) 340, 343, 346
Bsh1236I CGCG 1 cut(s) 111
BshNI GGYRCC 2 cut(s) 4, 277
Bsp143I GATC 2 cut(s) 142, 409
BspACI CCGC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 226, 358
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 6, 279
BspPI GGATC 2 cut(s) 150, 404
BspT107I GGYRCC 2 cut(s) 4, 277
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 142, 409
Bst2UI CCWGG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 18, 234, 366
BstF5I GGATG 2 cut(s) 52, 177
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 2 cut(s) 145, 412
BstMBI GATC 2 cut(s) 142, 409
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 340, 343, 346
BtsCI GGATG 2 cut(s) 52, 177
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 334
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 229
CviJI RGCY 9 cut(s) 57, 105, 190, 209, 258, 315, 334, 341, 406
CviKI_1 RGCY 9 cut(s) 57, 105, 190, 209, 258, 315, 334, 341, 406
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 3 cut(s) 18, 234, 366
DpnI GATC 2 cut(s) 144, 411
DpnII GATC 2 cut(s) 142, 409
DraI TTTAAA 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 232
FaiI YATR 6 cut(s) 15, 83, 135, 196, 230, 245
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 329, 332, 360
FokI GGATG 2 cut(s) 59, 164
Fsp4HI GCNGC 3 cut(s) 329, 332, 360
FspBI CTAG 1 cut(s) 102
GluI GCNGC 3 cut(s) 329, 332, 360
GsuI CTGGAG 1 cut(s) 356
Hin1II CATG 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 404
Hpy188I TCNGA 5 cut(s) 46, 129, 235, 305, 367
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 177, 345
HpyF3I CTNAG 3 cut(s) 18, 234, 366
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 1 cut(s) 232
KpnI GGTACC 1 cut(s) 281
Kzo9I GATC 2 cut(s) 142, 409
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 21, 72, 260, 287, 303, 320, 331
Lsp1109I GCAGC 3 cut(s) 340, 343, 346
LweI GCATC 3 cut(s) 37, 186, 237
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 144, 411
MboI GATC 2 cut(s) 142, 409
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 229, 280, 331, 361
MseI TTAA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 111
NdeII GATC 2 cut(s) 142, 409
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 6, 279
PkrI GCNGC 3 cut(s) 330, 333, 361
PsiI TTATAA 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 6, 279
PstNI CAGNNNCTG 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 3 cut(s) 329, 332, 360
Sau3AI GATC 2 cut(s) 142, 409
ScrFI CCNGG 1 cut(s) 275
SfaNI GCATC 3 cut(s) 37, 186, 237
SfcI CTRYAG 1 cut(s) 52
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 109
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 273
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 91, 415
TasI AATT 1 cut(s) 78
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 155
TseI GCWGC 3 cut(s) 328, 331, 359
TspRI CASTG 1 cut(s) 155
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.