Rmu_sc0000403.1_g000006

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000403.1
OG0020491
Physical Location & Seq
Reverse (-)
19126 .. 19503
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000403.1_g000006.1.cds

Sequence Viewer

Length: 378 bp
atggtaccatggttcgaattgaacatttccattgtcacacaggcatggcaacattgggcaaatggaacagctttggatatgttggactcaagtctaggggatcatcagtggcgcagatttgaagttttaaagtgcatccacattgggctattatgtgttcaagaagctcctactgatagaccaaccatgtctgaggttgttatgatgctaaatagctacactcttacctcccaggtaccttcacttccagcatttttcgttcgacaaggaagctctgctcactcacagcagttgggggctcgtagggaaagttctgctacttctgaagtatctcaatcagtaaatgacgttacaataaccgagcttcatcctcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

125

Amino Acids

14.04

Weight (kDa)

5.63

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020491)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160221
rosa_laevigata RLG00000021205
rosa_multiflora Rmu_sc0000403.1_g000006
rosa_roxburghii Rroxscaffold_2G00089950
rosa_samantha Rh2BG561100 Rh2CG531700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 4, 235
AccB1I GGYRCC 2 cut(s) 4, 235
AclWI GGATC 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 6, 237
AgsI TTSAA 3 cut(s) 22, 122, 161
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 5 cut(s) 71, 167, 216, 273, 364
AluI AGCT 5 cut(s) 71, 167, 216, 273, 364
AlwI GGATC 1 cut(s) 108
Asp718I GGTACC 2 cut(s) 4, 235
AspLEI GCGC 1 cut(s) 114
AsuII TTCGAA 1 cut(s) 15
BaeI ACNNNNGTAYC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 4, 235
BanII GRGCYC 1 cut(s) 301
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BciT130I CCWGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 6, 237
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 144, 195
BoxI GACNNNNGTC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 8, 231
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 8, 231
BseGI GGATG 2 cut(s) 135, 367
BseMII CTCAG 1 cut(s) 183
BshNI GGYRCC 2 cut(s) 4, 235
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 6, 237
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 2 cut(s) 4, 235
BssECI CCNNGG 2 cut(s) 8, 231
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 233
BstBI TTCGAA 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 135, 367
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 2 cut(s) 135, 367
BtsIMutI CAGTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 5, 236
CviAII CATG 3 cut(s) 9, 45, 187
CviJI RGCY 7 cut(s) 71, 148, 167, 216, 273, 299, 364
CviKI_1 RGCY 7 cut(s) 71, 148, 167, 216, 273, 299, 364
CviQI GTAC 2 cut(s) 5, 236
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 3 cut(s) 12, 48, 190
FaiI YATR 6 cut(s) 10, 46, 80, 154, 188, 203
FatI CATG 3 cut(s) 8, 44, 186
FokI GGATG 2 cut(s) 122, 354
FriOI GRGCYC 1 cut(s) 301
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 114
Hin1II CATG 3 cut(s) 12, 48, 190
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 193, 325
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 12, 48, 190
HspAI GCGC 1 cut(s) 112
KpnI GGTACC 2 cut(s) 8, 239
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 26, 218, 245, 261
LweI GCATC 2 cut(s) 144, 195
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 34, 349
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 187, 238
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 8
NdeII GATC 1 cut(s) 100
NlaIII CATG 3 cut(s) 12, 48, 190
NlaIV GGNNCC 2 cut(s) 6, 237
NmuCI GTSAC 1 cut(s) 34
NspV TTCGAA 1 cut(s) 15
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 6, 237
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
RsaI GTAC 2 cut(s) 6, 237
RsaNI GTAC 2 cut(s) 5, 236
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 128
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 2 cut(s) 144, 195
SfuI TTCGAA 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 15, 262, 373
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 113
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 356
TspRI CASTG 1 cut(s) 113
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.