Rroxscaffold_2G00089950

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
11807689 .. 11808779
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089950.1

Sequence Viewer

Length: 324 bp
ATGGTACGATGGTTCGAATTGAACACTTCCATTGTCACACAGGCATGGCAACATTGGGCAAATGGAACAGCTTTGGATATGTTGGACTCAAGTCTAGGGGATCATCGGTCGCGTAGATTTGAAGTTTTAAAGTGCATCCACATTGGGCTATTATGTGTTCAAGAAGCTCCTACCGATAGACCAACCATGTCCGAGGTTGTTATGATGCTAAATAGCTACACTCTTACCTCCCGTGTACCTTCACTTCCAGCATTTTTCGTCCGGCAAGGAAGCTCGCTCACTCGCAGCGGTTGGGGGCTTGCGGGGAAAGTTCTCTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

107

Amino Acids

12.06

Weight (kDa)

8.63

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020491)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160221
rosa_laevigata RLG00000021205
rosa_multiflora Rmu_sc0000403.1_g000006
rosa_roxburghii Rroxscaffold_2G00089950
rosa_samantha Rh2BG561100 Rh2CG531700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 288, 302
AclWI GGATC 1 cut(s) 108
AfaI GTAC 2 cut(s) 6, 237
AgsI TTSAA 3 cut(s) 22, 122, 161
AluBI AGCT 4 cut(s) 71, 167, 216, 273
AluI AGCT 4 cut(s) 71, 167, 216, 273
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 285
AsuII TTCGAA 1 cut(s) 15
BaeI ACNNNNGTAYC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 3
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmsI GCATC 2 cut(s) 144, 195
BoxI GACNNNNGTC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 15
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 288, 302
BspFNI CGCG 1 cut(s) 112
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 275, 300
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 110
BstPAI GACNNNNGTC 1 cut(s) 90
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 275, 300
Csp6I GTAC 2 cut(s) 5, 236
CviAII CATG 2 cut(s) 45, 187
CviJI RGCY 6 cut(s) 71, 148, 167, 216, 273, 298
CviKI_1 RGCY 6 cut(s) 71, 148, 167, 216, 273, 298
CviQI GTAC 2 cut(s) 5, 236
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 129
FaeI CATG 2 cut(s) 48, 190
FaiI YATR 5 cut(s) 46, 80, 154, 188, 203
FatI CATG 2 cut(s) 44, 186
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 286
HapII CCGG 1 cut(s) 262
Hin1II CATG 2 cut(s) 48, 190
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 135
Hsp92II CATG 2 cut(s) 48, 190
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 26, 261, 275
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 144, 195
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 187, 238
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 43
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 112
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 48, 190
NmuCI GTSAC 1 cut(s) 34
NspV TTCGAA 1 cut(s) 15
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 90
RsaI GTAC 2 cut(s) 6, 237
RsaNI GTAC 2 cut(s) 5, 236
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 80
SetI ASST 7 cut(s) 73, 169, 198, 218, 230, 241, 275
SfaNI GCATC 2 cut(s) 144, 195
SfuI TTCGAA 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 288, 302
SspMI CTAG 1 cut(s) 95
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 96
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 34
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.