RLG00000022383
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
83001576 .. 83004454
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022383

Sequence Viewer

Length: 1272 bp
ATGGGCTATTGCCCCTGTTTCGGTTTGAGGAAGGGCAAGAAGCTCAAGCGCGGCAAAGACGACGACGTTCACAAAACCACAATCAGCGACAACAAAAACCTTTCTTCCGATAATGCCACGCCTCAATTGTCTTCTGCTCAAGAAGATGGAACTAATGATCCTACTAAGGCACAGACATTCACCTTTCGTGAACTTGCAACTGCAACCAAAAATTTTAGGGCGGAATGCTTTATTGGGGAAGGTGGATTTGGGCCTGTATACAAAGGGAAATTGAGTTCTGATCGAGTTGTAGCTGTAAAGAAACTAGATCAGACAGGTCTTCAAGGAGACAAGGAGTTTCTGGTGGAAGTTCTAATGCTTTCTCTTCTGCGTCACCCAAACCTTGTAAGTTTAATTGGTTACTGTGCTGAAGGGGAGCAGCGCCTGCTTGTCTATGAATACATGCCCTTAGGGTCCTTGGCAGATCATCTCCATGATCTTAGACCTGATAAAGAACCACTTGATTGGAACACAAGGATGATGATAGCTGCTGGTGCAGCCAAAGGGTTGGAATATCTTCACCATGATGCTGAACCACCTGTCATATACAGGGATGTAAAATCAGCCAACATTTTGTTGGGGGAGGATTTTTTCCCTAAACTTTCTGATTTTGGGCTTGCAAAGTTTGGTCCTACTGGAGATAGATCGCATGTCTCCACCAGGGTCATGGGAACTCATGGTTACTGTGCTCCTGAGTATGCTAAAAGTGGAAAGTTGACAGCAAAGTCGGATATCTACAGTTTTGGGGTAGTCTTGCTGGAGTTGCTTACAGGACATAAGGCGGTTGATAGTACTCTTGGTCGTGAAAAACAGCTTGTTGAGTGGGCACGTCCTTTTATGAAAAATCCCAAGAATCTTACCATGCAATTTGCAGATCCATATCTTAGAGGGCAGTTTCCAGTACATATCTTGAGAAACGCATTAGAAGTGGCTTCCATGTGTCTAAGAGAGGATGCTTCTGCCCGACCGACCATGAGGGATGTGGTACTTGCCTTGAATTACTTGACAACCCATCCATATAATGAACCAAAGGTGTTGAGCATCAGCACTGAGCAGGTTGAAGGAATAAAGAGTTTCAATGCTTCAGGGAATAACTCTCCTAATGAAACGACATGCATGTTAAACAAGAACTTGGACAGAGAAAAAGCTGTTGCAGAGGCCAAGATGTGGGGAGAGACTTGGAGAGACAAACGAGGTGCACAAAATAGTCGTCATGATGCCTTTAGTCTTTAG

Protein Analysis

424

Amino Acids

47.1

Weight (kDa)

8.04

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 77 - 342 8.5e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 77 - 343 1.7e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015678)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 1084
AccB7I CCANNNNNTGG 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 51, 221, 821
AclWI GGATC 2 cut(s) 152, 908
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 429, 1107
AfaI GTAC 3 cut(s) 832, 942, 1026
AfiI CCNNNNNNNGG 2 cut(s) 20, 1206
AgsI TTSAA 4 cut(s) 323, 1036, 1100, 1117
AjiI CACGTC 1 cut(s) 869
AjnI CCWGG 1 cut(s) 698
AjuI GAANNNNNNNTTGG 4 cut(s) 216, 231, 248, 263
AloI GAACNNNNNNTCC 4 cut(s) 142, 174, 259, 291
AluBI AGCT 5 cut(s) 43, 293, 527, 853, 1187
AluI AGCT 5 cut(s) 43, 293, 527, 853, 1187
Alw21I GWGCWC 2 cut(s) 730, 1240
Alw26I GTCTC 4 cut(s) 321, 697, 1208, 1218
Alw44I GTGCAC 1 cut(s) 1236
AlwI GGATC 2 cut(s) 152, 908
AlwNI CAGNNNCTG 1 cut(s) 424
AoxI GGCC 2 cut(s) 251, 1197
ApaLI GTGCAC 1 cut(s) 1236
ApeKI GCWGC 3 cut(s) 418, 527, 536
ApoI RAATTY 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 1234, 1266
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 2 cut(s) 51, 423
AspS9I GGNCC 3 cut(s) 251, 453, 668
AsuHPI GGTGA 3 cut(s) 172, 365, 551
AvaII GGWCC 2 cut(s) 453, 668
AxyI CCTNAGG 1 cut(s) 448
BaeGI GKGCMC 2 cut(s) 868, 1240
BbsI GAAGAC 2 cut(s) 123, 311
Bbv12I GWGCWC 2 cut(s) 730, 1240
BbvI GCAGC 3 cut(s) 430, 514, 548
BccI CCATC 2 cut(s) 140, 1059
BciT130I CCWGG 1 cut(s) 700
BcoDI GTCTC 4 cut(s) 321, 697, 1208, 1218
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 775
BfoI RGCGCY 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 1084
BisI GCNGC 4 cut(s) 52, 419, 528, 537
BlsI GCNGC 4 cut(s) 53, 420, 529, 538
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 2 cut(s) 453, 668
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 3 cut(s) 251, 453, 668
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 700
BmsI GCATC 4 cut(s) 556, 982, 1089, 1246
BpiI GAAGAC 2 cut(s) 123, 311
BpmI CTGGAG 2 cut(s) 696, 818
BpuEI CTTGAG 3 cut(s) 29, 123, 970
BsaBI GATNNNNATC 1 cut(s) 918
BsaJI CCNNGG 2 cut(s) 456, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1206
Bse1I ACTGG 2 cut(s) 679, 938
Bse21I CCTNAGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 2 cut(s) 456, 699
BseGI GGATG 5 cut(s) 522, 598, 997, 1024, 1051
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 2 cut(s) 20, 1206
BseMII CTCAG 2 cut(s) 723, 1080
BseNI ACTGG 2 cut(s) 679, 938
BseSI GKGCMC 2 cut(s) 868, 1240
BseXI GCAGC 3 cut(s) 430, 514, 548
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 1007
BshFI GGCC 2 cut(s) 253, 1199
BsiEI CGRYCG 1 cut(s) 1007
BsiHKAI GWGCWC 2 cut(s) 730, 1240
BslI CCNNNNNNNGG 2 cut(s) 20, 1206
BsmAI GTCTC 4 cut(s) 321, 697, 1208, 1218
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 2 cut(s) 253, 1199
Bsp1286I GDGCHC 3 cut(s) 730, 868, 1240
Bsp143I GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
BspACI CCGC 3 cut(s) 51, 221, 821
BspANI GGCC 2 cut(s) 253, 1199
BspCNI CTCAG 2 cut(s) 724, 1081
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 1252
BspLI GGNNCC 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 1084
BspPI GGATC 2 cut(s) 152, 908
BsrI ACTGG 2 cut(s) 679, 938
BssECI CCNNGG 2 cut(s) 456, 699
BssMI GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 456
Bst1107I GTATAC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 3 cut(s) 404, 725, 779
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 425, 657
BstDEI CTNAG 7 cut(s) 165, 448, 479, 732, 923, 983, 1089
BstF5I GGATG 5 cut(s) 522, 598, 997, 1024, 1051
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 2 cut(s) 51, 423
BstKTI GATC 7 cut(s) 160, 283, 310, 466, 478, 686, 916
BstMAI GTCTC 4 cut(s) 321, 697, 1208, 1218
BstMBI GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
BstMCI CGRYCG 1 cut(s) 1007
BstMWI GCNNNNNNNGC 4 cut(s) 424, 533, 536, 802
BstNI CCWGG 1 cut(s) 700
BstNSI RCATGY 4 cut(s) 445, 692, 1155, 1159
BstSCI CCNGG 1 cut(s) 698
BstSFI CTRYAG 1 cut(s) 775
BstSLI GKGCMC 2 cut(s) 868, 1240
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 430, 514, 548
BstV2I GAAGAC 2 cut(s) 123, 311
BstX2I RGATCY 1 cut(s) 913
BstXI CCANNNNNNTGG 3 cut(s) 504, 547, 706
BstYI RGATCY 1 cut(s) 913
BstZ17I GTATAC 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 448
BsuRI GGCC 2 cut(s) 253, 1199
BtrI CACGTC 1 cut(s) 869
BtsCI GGATG 5 cut(s) 522, 598, 997, 1024, 1051
BtsIMutI CAGTG 1 cut(s) 1086
BveI ACCTGC 1 cut(s) 1084
Cac8I GCNNGC 2 cut(s) 425, 657
CaiI CAGNNNCTG 1 cut(s) 424
CciI TCATGA 1 cut(s) 1252
CfoI GCGC 2 cut(s) 51, 423
Cfr13I GGNCC 3 cut(s) 251, 453, 668
CseI GACGC 1 cut(s) 359
Csp6I GTAC 3 cut(s) 831, 941, 1025
CviQI GTAC 3 cut(s) 831, 941, 1025
DdeI CTNAG 7 cut(s) 165, 448, 479, 732, 923, 983, 1089
DpnI GATC 7 cut(s) 159, 282, 309, 465, 477, 685, 915
DpnII GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
DrdI GACNNNNNNGTC 1 cut(s) 763
DseDI GACNNNNNNGTC 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 456
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 453, 668
Eco57I CTGAAG 2 cut(s) 429, 1107
Eco81I CCTNAGG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 698
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 1157
ErhI CCWWGG 1 cut(s) 456
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 52, 419, 528, 537
FokI GGATG 5 cut(s) 529, 605, 1004, 1031, 1038
Fsp4HI GCNGC 4 cut(s) 52, 419, 528, 537
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 50, 422
GluI GCNGC 4 cut(s) 52, 419, 528, 537
GsuI CTGGAG 2 cut(s) 696, 818
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 2 cut(s) 253, 1199
HgaI GACGC 1 cut(s) 359
HhaI GCGC 2 cut(s) 51, 423
Hin6I GCGC 2 cut(s) 49, 421
HinP1I GCGC 2 cut(s) 49, 421
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HinfI GANTC 1 cut(s) 892
HphI GGTGA 3 cut(s) 172, 365, 551
Hpy166II GTNNAC 5 cut(s) 70, 191, 259, 756, 1238
Hpy188I TCNGA 5 cut(s) 109, 280, 312, 646, 769
Hpy188III TCNNGA 6 cut(s) 140, 188, 731, 842, 949, 1253
Hpy8I GTNNAC 5 cut(s) 70, 191, 259, 756, 1238
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 4 cut(s) 25, 233, 404, 1094
HpyCH4III ACNGT 3 cut(s) 404, 725, 779
HpyCH4IV ACGT 2 cut(s) 66, 868
HpyCH4V TGCA 9 cut(s) 197, 203, 536, 659, 904, 911, 1155, 1193, 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 533, 536, 802
HpyF3I CTNAG 7 cut(s) 165, 448, 479, 732, 923, 983, 1089
HpySE526I ACGT 2 cut(s) 66, 868
HspAI GCGC 2 cut(s) 49, 421
Kzo9I GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
LmnI GCTCC 2 cut(s) 415, 733
Lsp1109I GCAGC 3 cut(s) 430, 514, 548
LweI GCATC 4 cut(s) 556, 982, 1089, 1246
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 66, 868
MaeIII GTNAC 3 cut(s) 371, 398, 719
MalI GATC 7 cut(s) 159, 282, 309, 465, 477, 685, 915
MboI GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
MboII GAAGA 6 cut(s) 96, 123, 155, 311, 356, 548
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 3 cut(s) 730, 868, 1240
MluCI AATT 6 cut(s) 125, 211, 269, 393, 905, 1036
MmeI TCCRAC 2 cut(s) 528, 747
MnlI CCTC 8 cut(s) 21, 132, 616, 920, 982, 1008, 1189, 1226
Mph1103I ATGCAT 1 cut(s) 1157
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 392, 1160
MslI CAYNNNNRTG 3 cut(s) 471, 515, 564
MspR9I CCNGG 1 cut(s) 700
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 1 cut(s) 700
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 424, 533, 536, 802
NdeII GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 1157
NspI RCATGY 4 cut(s) 445, 692, 1155, 1159
PagI TCATGA 1 cut(s) 1252
PctI GAATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 892
PflMI CCANNNNNTGG 1 cut(s) 1206
PkrI GCNGC 4 cut(s) 53, 420, 529, 538
PpuMI RGGWCCY 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 698
PspGI CCWGG 1 cut(s) 698
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 3 cut(s) 251, 453, 668
PspPPI RGGWCCY 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 913
RsaI GTAC 3 cut(s) 832, 942, 1026
RsaNI GTAC 3 cut(s) 831, 941, 1025
RseI CAYNNNNRTG 3 cut(s) 471, 515, 564
SaqAI TTAA 2 cut(s) 392, 1160
SatI GCNGC 4 cut(s) 52, 419, 528, 537
Sau3AI GATC 7 cut(s) 157, 280, 307, 463, 475, 683, 913
Sau96I GGNCC 3 cut(s) 251, 453, 668
ScaI AGTACT 1 cut(s) 832
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 3 cut(s) 730, 868, 1240
SfaNI GCATC 4 cut(s) 556, 982, 1089, 1246
SfcI CTRYAG 1 cut(s) 775
SinI GGWCC 2 cut(s) 453, 668
SmiMI CAYNNNNRTG 3 cut(s) 471, 515, 564
SmlI CTYRAG 3 cut(s) 44, 138, 949
SmoI CTYRAG 3 cut(s) 44, 138, 949
Sse9I AATT 6 cut(s) 125, 211, 269, 393, 905, 1036
SsiI CCGC 3 cut(s) 51, 221, 821
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 698
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 404, 725, 779
TaiI ACGT 2 cut(s) 69, 871
TaqI TCGA 1 cut(s) 283
TaqII GACCGA 1 cut(s) 1021
TasI AATT 6 cut(s) 125, 211, 269, 393, 905, 1036
TatI WGTACW 2 cut(s) 830, 940
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 892
Tru1I TTAA 2 cut(s) 392, 1160
Tru9I TTAA 2 cut(s) 392, 1160
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 418, 527, 536
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 4 cut(s) 450, 893, 1077, 1158
TspRI CASTG 1 cut(s) 1093
Van91I CCANNNNNTGG 1 cut(s) 1206
VneI GTGCAC 1 cut(s) 1236
VpaK11BI GGWCC 2 cut(s) 453, 668
XapI RAATTY 1 cut(s) 211
XceI RCATGY 4 cut(s) 445, 692, 1155, 1159
XcmI CCANNNNNNNNNTGG 3 cut(s) 613, 703, 1018
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 832
Zsp2I ATGCAT 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.