Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0021384

Physical Location & Seq

Genomic Coordinates Reverse (-)

35511270 .. 35512371

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATTTGGCAACTGATCATTTGTAATCTTTGTAGCAGAAGCTTGTATGACATTGTCAGACAGGCAACTAGAAAGGAAGGCCAGGACACCCAGGAAGAACTGCAGAGGAAGAAGAGGGACCTCCAGGAGGAGCTGAAAGAGAGTGGGGGGCAAATTTTGGATGAAGATGGAGATGTCACCACCTATGATGATGATGACGACGACGAGGAGGAGGACGATCGCACAGAACTTTTGGCTGCTGCAGATGGTCTTGGAGGAAACCCATCAAGGCATAAAAGTGTGAGGAGATGGAATGATGATGTGGTGTTCAGAAATCAGAGCCGTGGTGAGAGCAAGACTCCTCAGCGCTTCATCAATGACACAGTCAGGAATGATTTTCACATCAAATTTCTGAATAAATACATGATCCCATTCATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

141

Amino Acids

16.46

Weight (kDa)

4.75

Isoelectric Point (pI)

76.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	92 - 135	7.7e-18	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021384)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0468911
rosa_laevigata	RLG00000024401
rosa_multiflora	Rmu_sc0003298.1_g000002
rosa_samantha	Rh3BG169700 Rh3DG205400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	153, 386
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	81, 90, 123
AluBI	AGCT	2 cut(s)	42, 133
AluI	AGCT	2 cut(s)	42, 133
AlwI	GGATC	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	236, 239
ApoI	RAATTY	2 cut(s)	153, 386
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	169, 338
AvaII	GGWCC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	223, 226
BccI	CCATC	4 cut(s)	161, 239, 271, 282
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	3 cut(s)	83, 92, 125
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	101, 240
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	2 cut(s)	237, 240
BlsI	GCNGC	2 cut(s)	238, 241
Bme1390I	CCNGG	3 cut(s)	83, 92, 125
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	3 cut(s)	83, 92, 125
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	90, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	83, 92, 125
BseDI	CCNNGG	2 cut(s)	90, 322
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	356
BseRI	GAGGAG	5 cut(s)	143, 221, 224, 298, 330
BseXI	GCAGC	2 cut(s)	223, 226
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	15, 217, 405
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	2 cut(s)	105, 244
BspPI	GGATC	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	90, 322
BssMI	GATC	3 cut(s)	15, 217, 405
Bst2UI	CCWGG	3 cut(s)	83, 92, 125
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	18, 220, 408
BstMBI	GATC	3 cut(s)	15, 217, 405
BstMCI	CGRYCG	1 cut(s)	220
BstNI	CCWGG	3 cut(s)	83, 92, 125
BstSCI	CCNGG	3 cut(s)	81, 90, 123
BstSFI	CTRYAG	2 cut(s)	101, 240
BstV1I	GCAGC	2 cut(s)	223, 226
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	2 cut(s)	403, 415
CviJI	RGCY	5 cut(s)	42, 81, 133, 236, 321
CviKI_1	RGCY	5 cut(s)	42, 81, 133, 236, 321
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	17, 219, 407
DpnII	GATC	3 cut(s)	15, 217, 405
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	3 cut(s)	81, 90, 123
EcoT22I	ATGCAT	1 cut(s)	420
FaeI	CATG	2 cut(s)	406, 418
FaiI	YATR	5 cut(s)	48, 186, 273, 404, 416
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	402, 414
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	237, 240
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	237, 240
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	237, 240
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	406, 418
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	1 cut(s)	337
HphI	GGTGA	2 cut(s)	169, 338
Hpy188I	TCNGA	4 cut(s)	59, 311, 318, 393
Hpy188III	TCNNGA	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	103, 242, 418
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	406, 418
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	15, 217, 405
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	47, 68, 77, 95, 104, 110, 137, 352
Lsp1109I	GCAGC	2 cut(s)	223, 226
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	17, 219, 407
MboI	GATC	3 cut(s)	15, 217, 405
MboII	GAAGA	4 cut(s)	107, 121, 124, 176
MluCI	AATT	2 cut(s)	153, 386
MlyI	GAGTC	1 cut(s)	331
Mph1103I	ATGCAT	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	83, 92, 125
MvaI	CCWGG	3 cut(s)	83, 92, 125
NdeII	GATC	3 cut(s)	15, 217, 405
NlaIII	CATG	2 cut(s)	406, 418
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	420
PflFI	GACNNNGTC	2 cut(s)	53, 362
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	238, 241
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	81, 90, 123
PspGI	CCWGG	3 cut(s)	81, 90, 123
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PstI	CTGCAG	2 cut(s)	105, 244
PsyI	GACNNNGTC	2 cut(s)	53, 362
PvuI	CGATCG	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	276
SatI	GCNGC	2 cut(s)	237, 240
Sau3AI	GATC	3 cut(s)	15, 217, 405
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	3 cut(s)	83, 92, 125
SetI	ASST	4 cut(s)	44, 123, 135, 185
SfcI	CTRYAG	2 cut(s)	101, 240
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	153, 386
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	81, 90, 123
TaaI	ACNGT	1 cut(s)	364
TasI	AATT	2 cut(s)	153, 386
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	236, 239
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	177, 340, 403
Tth111I	GACNNNGTC	2 cut(s)	53, 362
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	153, 386
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.