Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003298.1

Orthogroup ID

OG0021384

Physical Location & Seq

Genomic Coordinates Reverse (-)

7423 .. 7887

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003298.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgacaagcagatcaggtcaacccacttggacacctgcaaaaggtggcaacgaaccaagtggaagtggggtctcgtcaagagacactgcatcccataaaactctaaaactcagaaaggaagggcaggacacccaggaagaactgcagagggagaagaggaacctccaggaggagctgaaagagagtgggggacaaattttggatgaagatggagatgtcaccacctatgatgacgacgacgacgacgacgatcgcacagaagcacaagaacttttggctgctgcagatgttcttggaggaaacccatcaaggcataaaagtgtgaggagatggaatgatgatgtggtgttcagaaatcagagccgtggtgagaccaagactcctaagcgcttcatcaatgacacagtcaggaatgattttcacatcaaatttctgaataaatacatgatcccgttcatgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

154

Amino Acids

17.54

Weight (kDa)

5.26

Isoelectric Point (pI)

69.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021384)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0468911
rosa_laevigata	RLG00000024401
rosa_multiflora	Rmu_sc0003298.1_g000002
rosa_samantha	Rh3BG169700 Rh3DG205400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	195, 428
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	41, 169
AjnI	CCWGG	2 cut(s)	132, 165
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	75, 76, 365
AlwI	GGATC	1 cut(s)	442
Aor51HI	AGCGCT	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	278, 281
ApoI	RAATTY	2 cut(s)	195, 428
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	211, 380
BbvI	GCAGC	2 cut(s)	265, 268
BccI	CCATC	3 cut(s)	203, 313, 324
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	2 cut(s)	134, 167
BcoDI	GTCTC	3 cut(s)	75, 76, 365
BfmI	CTRYAG	2 cut(s)	143, 282
BfoI	RGCGCY	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	279, 282
BlsI	GCNGC	2 cut(s)	280, 283
Bme1390I	CCNGG	2 cut(s)	134, 167
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	134, 167
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	384
BsaI	GGTCTC	2 cut(s)	76, 365
BsaJI	CCNNGG	2 cut(s)	132, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 169
BseBI	CCWGG	2 cut(s)	134, 167
BseDI	CCNNGG	2 cut(s)	132, 364
BseGI	GGATG	2 cut(s)	89, 208
BseLI	CCNNNNNNNGG	2 cut(s)	41, 169
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	185, 340
BseXI	GCAGC	2 cut(s)	265, 268
Bsh1285I	CGRYCG	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	41, 169
BsmAI	GTCTC	3 cut(s)	75, 76, 365
BsmFI	GGGAC	1 cut(s)	204
Bso31I	GGTCTC	2 cut(s)	76, 365
Bsp143I	GATC	3 cut(s)	11, 250, 447
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	147, 286
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	442
BspTNI	GGTCTC	2 cut(s)	76, 365
BssECI	CCNNGG	2 cut(s)	132, 364
BssMI	GATC	3 cut(s)	11, 250, 447
Bst2UI	CCWGG	2 cut(s)	134, 167
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	110, 384
BstDSI	CCRYGG	1 cut(s)	364
BstENI	CCTNNNNNAGG	2 cut(s)	39, 167
BstF5I	GGATG	2 cut(s)	89, 208
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	14, 253, 450
BstMAI	GTCTC	3 cut(s)	75, 76, 365
BstMBI	GATC	3 cut(s)	11, 250, 447
BstMCI	CGRYCG	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	134, 167
BstSCI	CCNGG	2 cut(s)	132, 165
BstSFI	CTRYAG	2 cut(s)	143, 282
BstV1I	GCAGC	2 cut(s)	265, 268
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	89, 208
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	390
CviAII	CATG	2 cut(s)	445, 457
CviJI	RGCY	3 cut(s)	175, 278, 363
CviKI_1	RGCY	3 cut(s)	175, 278, 363
DdeI	CTNAG	2 cut(s)	110, 384
DpnI	GATC	3 cut(s)	13, 252, 449
DpnII	GATC	3 cut(s)	11, 250, 447
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	2 cut(s)	76, 365
Eco47III	AGCGCT	1 cut(s)	389
EcoNI	CCTNNNNNAGG	2 cut(s)	39, 167
EcoRII	CCWGG	2 cut(s)	132, 165
EcoT22I	ATGCAT	1 cut(s)	462
FaeI	CATG	2 cut(s)	448, 460
FaiI	YATR	5 cut(s)	96, 228, 315, 446, 458
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	444, 456
Fnu4HI	GCNGC	2 cut(s)	279, 282
FokI	GGATG	2 cut(s)	76, 215
Fsp4HI	GCNGC	2 cut(s)	279, 282
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	2 cut(s)	279, 282
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	391
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	448, 460
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	2 cut(s)	211, 380
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	113, 353, 360, 435
Hpy188III	TCNNGA	2 cut(s)	78, 409
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	5 cut(s)	239, 242, 245, 248, 251
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	38, 89, 145, 284, 460
HpyF3I	CTNAG	2 cut(s)	110, 384
Hsp92II	CATG	2 cut(s)	448, 460
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	11, 250, 447
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	48, 110, 119, 146, 152, 179, 394
Lsp1109I	GCAGC	2 cut(s)	265, 268
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	13, 252, 449
MboI	GATC	3 cut(s)	11, 250, 447
MboII	GAAGA	3 cut(s)	149, 166, 218
MluCI	AATT	2 cut(s)	195, 428
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	6 cut(s)	141, 150, 163, 173, 290, 318
Mph1103I	ATGCAT	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	134, 167
MvaI	CCWGG	2 cut(s)	134, 167
NdeII	GATC	3 cut(s)	11, 250, 447
NlaIII	CATG	2 cut(s)	448, 460
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 243, 246
PflFI	GACNNNGTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	280, 283
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	132, 165
PspGI	CCWGG	2 cut(s)	132, 165
PspN4I	GGNNCC	1 cut(s)	161
PstI	CTGCAG	2 cut(s)	147, 286
PsyI	GACNNNGTC	1 cut(s)	404
PvuI	CGATCG	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	2 cut(s)	279, 282
Sau3AI	GATC	3 cut(s)	11, 250, 447
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	134, 167
SetI	ASST	6 cut(s)	19, 37, 46, 165, 177, 227
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	143, 282
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	195, 428
StyD4I	CCNGG	2 cut(s)	132, 165
TaaI	ACNGT	1 cut(s)	406
TasI	AATT	2 cut(s)	195, 428
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	278, 281
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	219, 382, 445
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	404
XagI	CCTNNNNNAGG	2 cut(s)	39, 167
XapI	RAATTY	2 cut(s)	195, 428
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.