Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0021384

Physical Location & Seq

Genomic Coordinates Forward (+)

14565398 .. 14565859

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG169700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACAAGCAGATCAGGTCAACCCACTTGGACACCTGCAAAAGGTGGCAACAAACCAAGTGGAAGTGGGGTCTCGTCAAGAGACATTGCATCCCATAAAACTCTAAAACTCAGAAAGGAAGGGCAGGACACCCAGGAAGAACTGCAGAGGAAGAAGAGGAACCTCCAGGAGGAGCTGAAAGAGATTGGGGGACAAATTTTGGATGAAGATGGAGATGTCACCACCTATGATGACGACGACGACGACGATCGCACAGAAGCACAAGAACTTTTGGCTGCTGCAGATGTTCTTGGAGGAAACCCATCAAGGCATAAAAGTGTGAGGAGATGGAATGATGATGTGGTGTTCAGAAATCAGAGCCGTGGTGAGACCAAGACTCCTAAGCGCTTCATCAATGACACAGTCAGGAATGATTTTCGCATCAAATTTCTGAATAAATACATGATCCCGTTCATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

153

Amino Acids

17.48

Weight (kDa)

6.85

Isoelectric Point (pI)

68.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cwf_Cwc_15	PF04889	5 - 61	1.5e-11	Cwf15/Cwc15 cell cycle control protein
Cwf_Cwc_15	PF04889	104 - 148	2.9e-15	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021384)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0468911
rosa_laevigata	RLG00000024401
rosa_multiflora	Rmu_sc0003298.1_g000002
rosa_samantha	Rh3BG169700 Rh3DG205400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	195, 425
AfeI	AGCGCT	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	41, 169
AjnI	CCWGG	2 cut(s)	132, 165
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	75, 76, 362
AlwI	GGATC	1 cut(s)	439
Aor51HI	AGCGCT	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	275, 278
ApoI	RAATTY	2 cut(s)	195, 425
AspLEI	GCGC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	211, 377
BbvI	GCAGC	2 cut(s)	262, 265
BccI	CCATC	3 cut(s)	203, 310, 321
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	134, 167
BcoDI	GTCTC	3 cut(s)	75, 76, 362
BfmI	CTRYAG	2 cut(s)	143, 279
BfoI	RGCGCY	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	2 cut(s)	134, 167
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	134, 167
BmsI	GCATC	2 cut(s)	98, 429
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	381
BsaI	GGTCTC	2 cut(s)	76, 362
BsaJI	CCNNGG	2 cut(s)	132, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 169
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	134, 167
BseDI	CCNNGG	2 cut(s)	132, 361
BseGI	GGATG	2 cut(s)	89, 208
BseLI	CCNNNNNNNGG	2 cut(s)	41, 169
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	185, 337
BseXI	GCAGC	2 cut(s)	262, 265
Bsh1285I	CGRYCG	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	41, 169
BsmAI	GTCTC	3 cut(s)	75, 76, 362
BsmFI	GGGAC	1 cut(s)	204
Bso31I	GGTCTC	2 cut(s)	76, 362
Bsp143I	GATC	3 cut(s)	11, 247, 444
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	147, 283
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	439
BspTNI	GGTCTC	2 cut(s)	76, 362
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	132, 361
BssMI	GATC	3 cut(s)	11, 247, 444
Bst2UI	CCWGG	2 cut(s)	134, 167
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	110, 381
BstDSI	CCRYGG	1 cut(s)	361
BstENI	CCTNNNNNAGG	2 cut(s)	39, 167
BstF5I	GGATG	2 cut(s)	89, 208
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	3 cut(s)	14, 250, 447
BstMAI	GTCTC	3 cut(s)	75, 76, 362
BstMBI	GATC	3 cut(s)	11, 247, 444
BstMCI	CGRYCG	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	134, 167
BstSCI	CCNGG	2 cut(s)	132, 165
BstSFI	CTRYAG	2 cut(s)	143, 279
BstV1I	GCAGC	2 cut(s)	262, 265
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	89, 208
BveI	ACCTGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	387
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	2 cut(s)	442, 454
CviJI	RGCY	3 cut(s)	175, 275, 360
CviKI_1	RGCY	3 cut(s)	175, 275, 360
DdeI	CTNAG	2 cut(s)	110, 381
DpnI	GATC	3 cut(s)	13, 249, 446
DpnII	GATC	3 cut(s)	11, 247, 444
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco31I	GGTCTC	2 cut(s)	76, 362
Eco47III	AGCGCT	1 cut(s)	386
EcoNI	CCTNNNNNAGG	2 cut(s)	39, 167
EcoRII	CCWGG	2 cut(s)	132, 165
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	2 cut(s)	445, 457
FaiI	YATR	5 cut(s)	96, 228, 312, 443, 455
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	441, 453
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	2 cut(s)	76, 215
Fsp4HI	GCNGC	2 cut(s)	276, 279
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	2 cut(s)	276, 279
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	388
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	445, 457
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	2 cut(s)	211, 377
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	113, 350, 357, 432
Hpy188III	TCNNGA	2 cut(s)	78, 406
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	4 cut(s)	239, 242, 245, 248
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	38, 89, 145, 281, 457
HpyF3I	CTNAG	2 cut(s)	110, 381
Hsp92II	CATG	2 cut(s)	445, 457
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	11, 247, 444
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	48, 110, 119, 146, 152, 179, 391
Lsp1109I	GCAGC	2 cut(s)	262, 265
LweI	GCATC	2 cut(s)	98, 429
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	13, 249, 446
MboI	GATC	3 cut(s)	11, 247, 444
MboII	GAAGA	4 cut(s)	149, 163, 166, 218
MluCI	AATT	2 cut(s)	195, 425
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	6 cut(s)	141, 150, 163, 173, 287, 315
Mph1103I	ATGCAT	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	134, 167
MvaI	CCWGG	2 cut(s)	134, 167
NdeII	GATC	3 cut(s)	11, 247, 444
NlaIII	CATG	2 cut(s)	445, 457
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 243
PflFI	GACNNNGTC	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	277, 280
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	132, 165
PspGI	CCWGG	2 cut(s)	132, 165
PspN4I	GGNNCC	1 cut(s)	161
PstI	CTGCAG	2 cut(s)	147, 283
PsyI	GACNNNGTC	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	315
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	3 cut(s)	11, 247, 444
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	134, 167
SetI	ASST	6 cut(s)	19, 37, 46, 165, 177, 227
SfaNI	GCATC	2 cut(s)	98, 429
SfcI	CTRYAG	2 cut(s)	143, 279
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	195, 425
StyD4I	CCNGG	2 cut(s)	132, 165
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	2 cut(s)	195, 425
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	275, 278
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	219, 379, 442
Tth111I	GACNNNGTC	1 cut(s)	401
XagI	CCTNNNNNAGG	2 cut(s)	39, 167
XapI	RAATTY	2 cut(s)	195, 425
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.