RLG00000024800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0025348
Physical Location & Seq
Forward (+)
39210529 .. 39211284
756 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024800

Sequence Viewer

Length: 447 bp
ATGCAGCAAGAGTGCCCAATGGAGGAGAGCAGAGGCAACCAAGGTCATCATCTACTTCCTGGAGAGAGGTTCTACCCCAGGGAGGACGAACTAGTTCTCTTCTACCTCAAGCCAATGTTGAACGGAGAGAAGTTTCCCGGCCGAAACTTCGTGGTGTTCGACTGTGACCTATACGGTCACCAAGAGCCTTGGGAAATATGGGAGGCCTACAAGACCAGAAGACCAAAACTTGAGGCTGAAAAAAGACCTTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACTCACGCGTACGCAGGAAAGTTGGAACTGGCACCTGGAATGGCGACGACTCCGGCAAGCCAGTGAAATCTTTGGAGACCGGTCGTGTGGTTGGCTTAAAGAAAAGGTATTCTTACAAGAGTGTAGCTTCTGTGCACCACGGTTGTTGGATCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

149

Amino Acids

17.98

Weight (kDa)

5.89

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 133 4.6e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025348)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024800
rosa_multiflora Rmu_sc0008079.1_g000011
rosa_samantha Rh3DG126400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccII CGCG 1 cut(s) 295
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 22, 82
AflIII ACRYGT 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 366
AgsI TTSAA 1 cut(s) 121
AhlI ACTAGT 1 cut(s) 91
AjnI CCWGG 3 cut(s) 58, 77, 321
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 1 cut(s) 357
Alw44I GTGCAC 1 cut(s) 420
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 139, 204
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 366
Asp700I GAANNNNTTC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 170, 251
BaeGI GKGCMC 2 cut(s) 17, 424
BanI GGYRCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 3 cut(s) 60, 79, 323
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 357
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 4 cut(s) 60, 79, 138, 323
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 4 cut(s) 60, 79, 138, 323
BpiI GAAGAC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 92, 251
BpuMI CCSGG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 5 cut(s) 40, 77, 78, 188, 425
BsaWI WCCGGW 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 82
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 320, 348
BseBI CCWGG 3 cut(s) 60, 79, 323
BseDI CCNNGG 5 cut(s) 40, 77, 78, 188, 425
BseLI CCNNNNNNNGG 2 cut(s) 22, 82
BseNI ACTGG 2 cut(s) 320, 348
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 2 cut(s) 17, 424
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 2 cut(s) 142, 371
BshFI GGCC 2 cut(s) 141, 206
BshNI GGYRCC 1 cut(s) 318
BshTI ACCGGT 1 cut(s) 366
BsiEI CGRYCG 2 cut(s) 142, 371
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 3 cut(s) 138, 340, 367
BsiWI CGTACG 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 22, 82
BsmAI GTCTC 1 cut(s) 357
BsnI GGCC 2 cut(s) 141, 206
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 17, 424
Bsp143I GATC 1 cut(s) 436
BspANI GGCC 2 cut(s) 141, 206
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 2 cut(s) 320, 348
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 5 cut(s) 40, 77, 78, 188, 425
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 2 cut(s) 40, 188
Bst2UI CCWGG 3 cut(s) 60, 79, 323
Bst4CI ACNGT 3 cut(s) 164, 176, 429
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 425
BstEII GGTNACC 1 cut(s) 176
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 1 cut(s) 436
BstMCI CGRYCG 2 cut(s) 142, 371
BstNI CCWGG 3 cut(s) 60, 79, 323
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 4 cut(s) 58, 77, 136, 321
BstSLI GKGCMC 2 cut(s) 17, 424
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 141, 206
BtgI CCRYGG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 366
Csp6I GTAC 1 cut(s) 297
CspAI ACCGGT 1 cut(s) 366
CspCI CAANNNNNGTGG 1 cut(s) 414
CviJI RGCY 8 cut(s) 112, 141, 187, 206, 236, 347, 382, 414
CviKI_1 RGCY 8 cut(s) 112, 141, 187, 206, 236, 347, 382, 414
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 40, 188
Eco147I AGGCCT 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 139
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRII CCWGG 3 cut(s) 58, 77, 321
EcoT14I CCWWGG 2 cut(s) 40, 188
ErhI CCWWGG 2 cut(s) 40, 188
FaiI YATR 3 cut(s) 172, 199, 445
FalI AAGNNNNNCTT 2 cut(s) 383, 415
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 92
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 141, 206
HapII CCGG 3 cut(s) 138, 340, 367
HinfI GANTC 2 cut(s) 288, 336
HpaII CCGG 3 cut(s) 138, 340, 367
HphI GGTGA 2 cut(s) 170, 251
Hpy166II GTNNAC 1 cut(s) 422
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 1 cut(s) 336
HpyCH4III ACNGT 3 cut(s) 164, 176, 429
HpyCH4V TGCA 2 cut(s) 4, 422
Kzo9I GATC 1 cut(s) 436
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 164, 176
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 4 cut(s) 91, 231, 248, 284
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 17, 424
MluI ACGCGT 1 cut(s) 293
MlyI GAGTC 2 cut(s) 282, 330
MmeI TCCRAC 2 cut(s) 290, 414
MnlI CCTC 7 cut(s) 16, 26, 60, 76, 116, 196, 226
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 384
MspI CCGG 3 cut(s) 138, 340, 367
MspR9I CCNGG 4 cut(s) 60, 79, 138, 323
MvaI CCWGG 3 cut(s) 60, 79, 323
MvnI CGCG 1 cut(s) 295
NciI CCSGG 1 cut(s) 138
NdeII GATC 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 164, 176
PasI CCCWGGG 1 cut(s) 78
PceI AGGCCT 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 93
Pfl23II CGTACG 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 58
PinAI ACCGGT 1 cut(s) 366
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 282, 330
PpsI GAGTC 2 cut(s) 282, 330
Psp6I CCWGG 3 cut(s) 58, 77, 321
PspEI GGTNACC 1 cut(s) 176
PspGI CCWGG 3 cut(s) 58, 77, 321
PspLI CGTACG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 320
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 436
SchI GAGTC 2 cut(s) 282, 330
ScrFI CCNGG 4 cut(s) 60, 79, 138, 323
SduI GDGCHC 2 cut(s) 17, 424
SetI ASST 8 cut(s) 46, 71, 108, 171, 250, 324, 396, 416
SmlI CTYRAG 2 cut(s) 107, 230
SmoI CTYRAG 2 cut(s) 107, 230
SpeI ACTAGT 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 206
SspMI CTAG 1 cut(s) 92
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 4 cut(s) 58, 77, 136, 321
StyI CCWWGG 2 cut(s) 40, 188
TaaI ACNGT 3 cut(s) 164, 176, 429
TaqI TCGA 1 cut(s) 159
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 164, 176
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 164, 176
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.