Rmu_sc0008079.1_g000011
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008079.1
OG0025348
Physical Location & Seq
Reverse (-)
67615 .. 69250
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008079.1_g000011.1.cds

Sequence Viewer

Length: 537 bp
atggaggagagcagccaaggtcatcatctacttcctggcgagaggttctgccccatggaggacgaactagttctcttctacctcaagccaatgttgaacggagagaaggttcccggccgaaacttcgtggtgttcgactgtgacttatacggtcaccaagagccttgggaaatatggaagaccagaagaccaaaacttgaggctgaacaaagacctttacttcttcacccaacacaagaagatgagttccacagactcacgagtaagcgtacgcagaaaagttggaactggcacctggaatggcgacgactctggcaagccagtgaaatctttggagaccggtcttgtggttggcttaaagaaaaggtattcttacaagaatgtagcttctgtgcaccacggcctacgaaggcagtagaatggtgtgaaggttgtgagacattaggtcggggagatgagattgcaggagggacatgcatggttggcttgttcaaaaggagggagaattgctttctttaccaacgtgctcgagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

178

Amino Acids

21.12

Weight (kDa)

6.6

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025348)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024800
rosa_multiflora Rmu_sc0008079.1_g000011
rosa_samantha Rh3DG126400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 97, 493
AhdI GACNNNNNGTC 1 cut(s) 444
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 2 cut(s) 34, 294
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 2 cut(s) 387, 533
AluI AGCT 2 cut(s) 387, 533
Alw21I GWGCWC 2 cut(s) 397, 529
Alw26I GTCTC 2 cut(s) 330, 431
Alw44I GTGCAC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 2 cut(s) 115, 401
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 12
AsiGI ACCGGT 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 146, 218
AvaI CYCGRG 1 cut(s) 528
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 291
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 185, 193
Bbv12I GWGCWC 2 cut(s) 397, 529
BbvI GCAGC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 36, 296
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 330, 431
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 36, 114, 296
BmeRI GACNNNNNGTC 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 528
BmiI GGNNCC 2 cut(s) 111, 293
BmrFI CCNGG 3 cut(s) 36, 114, 296
BpiI GAAGAC 2 cut(s) 185, 193
BpuEI CTTGAG 2 cut(s) 68, 218
BpuMI CCSGG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 16, 54, 164, 398
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 2 cut(s) 293, 321
BseBI CCWGG 2 cut(s) 36, 296
BseDI CCNNGG 4 cut(s) 16, 54, 164, 398
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 293, 321
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 397
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 117, 403
BshNI GGYRCC 1 cut(s) 291
BshTI ACCGGT 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 397, 529
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 2 cut(s) 114, 340
BsiWI CGTACG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 330, 431
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 2 cut(s) 117, 403
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 397, 529
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 2 cut(s) 117, 403
BspLI GGNNCC 2 cut(s) 111, 293
BspT107I GGYRCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 2 cut(s) 293, 321
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 4 cut(s) 16, 54, 164, 398
BssSI CACGAG 1 cut(s) 259
BssT1I CCWWGG 3 cut(s) 16, 54, 164
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 36, 296
Bst4CI ACNGT 2 cut(s) 140, 152
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 2 cut(s) 54, 398
BstEII GGTNACC 1 cut(s) 152
BstMAI GTCTC 2 cut(s) 330, 431
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 2 cut(s) 36, 296
BstNSI RCATGY 1 cut(s) 477
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 34, 112, 294
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 185, 193
BstZI CGGCCG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 117, 403
BtgI CCRYGG 2 cut(s) 54, 398
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 339
Csp6I GTAC 1 cut(s) 270
CspAI ACCGGT 1 cut(s) 339
CviAII CATG 3 cut(s) 55, 474, 478
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 534
DriI GACNNNNNGTC 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 80
EclXI CGGCCG 1 cut(s) 115
Eco130I CCWWGG 3 cut(s) 16, 54, 164
Eco31I GGTCTC 1 cut(s) 330
Eco52I CGGCCG 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 528
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 34, 294
EcoT14I CCWWGG 3 cut(s) 16, 54, 164
EcoT22I ATGCAT 1 cut(s) 479
ErhI CCWWGG 3 cut(s) 16, 54, 164
FaeI CATG 3 cut(s) 58, 477, 481
FaiI YATR 5 cut(s) 56, 148, 175, 475, 479
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 54, 473, 477
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 117, 403
HapII CCGG 2 cut(s) 114, 340
Hin1II CATG 3 cut(s) 58, 477, 481
HinfI GANTC 2 cut(s) 255, 309
HpaII CCGG 2 cut(s) 114, 340
HphI GGTGA 2 cut(s) 146, 218
Hpy166II GTNNAC 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 100, 403, 422
HpyCH4III ACNGT 2 cut(s) 140, 152
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 395, 464, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 3 cut(s) 58, 477, 481
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 2 cut(s) 140, 152
MboII GAAGA 5 cut(s) 67, 190, 198, 215, 251
MhlI GDGCHC 2 cut(s) 397, 529
MluCI AATT 1 cut(s) 505
MlyI GAGTC 2 cut(s) 249, 303
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 6 cut(s) 36, 52, 92, 193, 461, 492
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 357
MspI CCGG 2 cut(s) 114, 340
MspR9I CCNGG 3 cut(s) 36, 114, 296
MvaI CCWGG 2 cut(s) 36, 296
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 3 cut(s) 58, 477, 481
NlaIV GGNNCC 2 cut(s) 111, 293
NmuCI GTSAC 2 cut(s) 140, 152
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 69
Pfl23II CGTACG 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 339
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 249, 303
PpsI GAGTC 2 cut(s) 249, 303
Psp6I CCWGG 2 cut(s) 34, 294
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 34, 294
PspLI CGTACG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 111, 293
PspXI VCTCGAGB 1 cut(s) 528
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 13
SchI GAGTC 2 cut(s) 249, 303
ScrFI CCNGG 3 cut(s) 36, 114, 296
SduI GDGCHC 2 cut(s) 397, 529
Sfr274I CTCGAG 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 528
SmlI CTYRAG 3 cut(s) 83, 197, 528
SmoI CTYRAG 3 cut(s) 83, 197, 528
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 1 cut(s) 505
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 34, 112, 294
StyI CCWWGG 3 cut(s) 16, 54, 164
TaaI ACNGT 2 cut(s) 140, 152
TaiI ACGT 1 cut(s) 526
TaqI TCGA 2 cut(s) 135, 529
TasI AATT 1 cut(s) 505
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 2 cut(s) 140, 152
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 2 cut(s) 140, 152
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 393
XceI RCATGY 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.