Rh3DG126400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0025348
Physical Location & Seq
Reverse (-)
10693744 .. 10695872
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG126400.1

Sequence Viewer

Length: 780 bp
ATGCAGCAAGAGTGCGCAATGGAGGAGAGCAGAGGCAACCAAGGTCATCATCTACTTCCTGGCGAGAGGTTCTGCCCCATGGAGGACGAACTAGTTCTCTTCTACCTCAAGCCAATGTTGAACGGAGAGAAGGTTCCCGGCCGAAACTTCGTGGTGTTCGACTGTGACCTATACGGTCACCAAGAGCCTTGGGAAATATGGAAGACCAGAAGACCAAAACTTGAGGCTGAACAAAGACCTTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACTCACGAGTAGCCGTACACAGAAAAGTTGGAACTGGCACCTGGAATGGCGACGACTCTGGCAAGCCAGTGAAATCTTTGGAGACCGGTCTTGTTGTTGGCTTAAAGAAAAGGTATTCTTACAAGAATGTAGCTTCTGTGCACCACGGTTGTTGGATGAGTTCTACCTTGATCGATCACTCAGAGAGAAAAGAAGAAAGACTGTTCTTTGTCTACTACGAAAAAATGTTGAACCCAAAAGCGAAAGCCAAAAGAAGAGAAAACAATGTGAAGAGGAAGAGGTTCTTGGAAACAATTACGTCTGTGATGATGGAGAAAGCTCGAATAGGGAGCAAGAAGAGTTGCCTGAGCCACAAGCAAAGCGGCAGCAAAGCTTACCATATTTTTATAATGCACCAGTGCCATCAGAAAATGATGCATTCGCAGCTGAACTAGAAGAGTTATTGCCCTGCTTTGAAGAGGATAATCTCCAAAAGAAAATGATGCATTCGCAGCTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

259

Amino Acids

30.96

Weight (kDa)

5.37

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 105 9.1e-08 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025348)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024800
rosa_multiflora Rmu_sc0008079.1_g000011
rosa_samantha Rh3DG126400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
Acc16I TGCGCA 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 490
AciI CCGC 1 cut(s) 640
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 363
AgsI TTSAA 3 cut(s) 121, 509, 734
AhlI ACTAGT 1 cut(s) 91
AjnI CCWGG 2 cut(s) 58, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 5 cut(s) 411, 597, 651, 704, 772
AluI AGCT 5 cut(s) 411, 597, 651, 704, 772
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 354
Alw44I GTGCAC 1 cut(s) 417
AoxI GGCC 1 cut(s) 139
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 4 cut(s) 4, 643, 701, 769
AsiGI ACCGGT 1 cut(s) 363
Asp700I GAANNNNTTC 2 cut(s) 93, 558
AspLEI GCGC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 170, 242
BaeGI GKGCMC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 209, 217
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 16, 655, 713
BccI CCATC 2 cut(s) 581, 688
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 60, 320
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 354
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 3 cut(s) 92, 710, 778
BisI GCNGC 5 cut(s) 5, 641, 644, 702, 770
BlsI GCNGC 5 cut(s) 6, 642, 645, 703, 771
Bme1390I CCNGG 3 cut(s) 60, 138, 320
BmiI GGNNCC 2 cut(s) 135, 317
BmrFI CCNGG 3 cut(s) 60, 138, 320
BmsI GCATC 2 cut(s) 682, 750
BpiI GAAGAC 2 cut(s) 209, 217
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 2 cut(s) 92, 242
BpuMI CCSGG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 40, 78, 188, 422
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 363
Bse1I ACTGG 3 cut(s) 317, 345, 674
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 60, 320
BseCI ATCGAT 1 cut(s) 451
BseDI CCNNGG 4 cut(s) 40, 78, 188, 422
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 472, 615
BseNI ACTGG 3 cut(s) 317, 345, 674
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 421
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 16, 655, 713
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 315
BshTI ACCGGT 1 cut(s) 363
BshVI ATCGAT 1 cut(s) 451
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 138, 364
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 354
BsmI GAATGC 2 cut(s) 695, 763
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 448, 452
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 640
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 471, 616
BspDI ATCGAT 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 135, 317
BspT107I GGYRCC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 363
BsrI ACTGG 3 cut(s) 317, 345, 674
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 4 cut(s) 40, 78, 188, 422
BssMI GATC 2 cut(s) 448, 452
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 3 cut(s) 40, 78, 188
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 60, 320
Bst4CI ACNGT 4 cut(s) 164, 176, 426, 481
Bst6I CTCTTC 7 cut(s) 104, 527, 543, 549, 609, 708, 729
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 458, 624
BstDSI CCRYGG 2 cut(s) 78, 422
BstEII GGTNACC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 451, 455
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 2 cut(s) 448, 452
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 701, 769
BstNI CCWGG 2 cut(s) 60, 320
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 58, 136, 318
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 16, 655, 713
BstV2I GAAGAC 2 cut(s) 209, 217
BstZI CGGCCG 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 451
BsuRI GGCC 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 451
BtgI CCRYGG 2 cut(s) 78, 422
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 352, 681
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 451
Csp6I GTAC 1 cut(s) 294
CspAI ACCGGT 1 cut(s) 363
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 1 cut(s) 79
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 458, 624
DpnI GATC 2 cut(s) 450, 454
DpnII GATC 2 cut(s) 448, 452
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 7 cut(s) 104, 527, 543, 549, 609, 708, 729
EarI CTCTTC 7 cut(s) 104, 527, 543, 549, 609, 708, 729
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 40, 78, 188
Eco31I GGTCTC 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 139
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 58, 318
EcoT14I CCWWGG 3 cut(s) 40, 78, 188
EcoT22I ATGCAT 2 cut(s) 697, 765
ErhI CCWWGG 3 cut(s) 40, 78, 188
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 80, 172, 199, 658, 666
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 546, 578
FatI CATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 5 cut(s) 5, 641, 644, 702, 770
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 5 cut(s) 5, 641, 644, 702, 770
FspBI CTAG 3 cut(s) 92, 710, 778
FspI TGCGCA 1 cut(s) 16
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 5, 641, 644, 702, 770
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 138, 364
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 2 cut(s) 279, 333
HpaII CCGG 2 cut(s) 138, 364
HphI GGTGA 2 cut(s) 170, 242
Hpy166II GTNNAC 3 cut(s) 296, 419, 491
Hpy188I TCNGA 2 cut(s) 461, 685
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 3 cut(s) 296, 419, 491
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 4 cut(s) 164, 176, 426, 481
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 5 cut(s) 4, 419, 671, 695, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 769
HpyF3I CTNAG 2 cut(s) 458, 624
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 448, 452
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 16, 655, 713
LweI GCATC 2 cut(s) 682, 750
MaeI CTAG 3 cut(s) 92, 710, 778
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 164, 176
MalI GATC 2 cut(s) 450, 454
MboI GATC 2 cut(s) 448, 452
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 571
MlyI GAGTC 2 cut(s) 273, 327
MmeI TCCRAC 2 cut(s) 287, 411
MnlI CCTC 9 cut(s) 16, 26, 60, 76, 116, 217, 544, 550, 730
Mph1103I ATGCAT 2 cut(s) 697, 765
MroXI GAANNNNTTC 2 cut(s) 93, 558
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 704, 772
MspI CCGG 2 cut(s) 138, 364
MspR9I CCNGG 3 cut(s) 60, 138, 320
Mva1269I GAATGC 2 cut(s) 695, 763
MvaI CCWGG 2 cut(s) 60, 320
MwoI GCNNNNNNNGC 2 cut(s) 701, 769
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 448, 452
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 135, 317
NmuCI GTSAC 2 cut(s) 164, 176
NsbI TGCGCA 1 cut(s) 16
NsiI ATGCAT 2 cut(s) 697, 765
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 2 cut(s) 695, 763
PdmI GAANNNNTTC 2 cut(s) 93, 558
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 5 cut(s) 6, 642, 645, 703, 771
PleI GAGTC 2 cut(s) 273, 327
PpsI GAGTC 2 cut(s) 273, 327
PsiI TTATAA 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 58, 318
PspEI GGTNACC 1 cut(s) 176
PspGI CCWGG 2 cut(s) 58, 318
PspN4I GGNNCC 2 cut(s) 135, 317
PvuII CAGCTG 2 cut(s) 704, 772
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 5, 641, 644, 702, 770
Sau3AI GATC 2 cut(s) 448, 452
SchI GAGTC 2 cut(s) 273, 327
ScrFI CCNGG 3 cut(s) 60, 138, 320
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 682, 750
SmlI CTYRAG 2 cut(s) 107, 221
SmoI CTYRAG 2 cut(s) 107, 221
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 1 cut(s) 571
SsiI CCGC 1 cut(s) 640
SspMI CTAG 3 cut(s) 92, 710, 778
StyD4I CCNGG 3 cut(s) 58, 136, 318
StyI CCWWGG 3 cut(s) 40, 78, 188
TaaI ACNGT 4 cut(s) 164, 176, 426, 481
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 159, 451, 599
TasI AATT 1 cut(s) 571
TauI GCSGC 1 cut(s) 643
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 352, 681
TseFI GTSAC 2 cut(s) 164, 176
TseI GCWGC 4 cut(s) 4, 643, 701, 769
Tsp45I GTSAC 2 cut(s) 164, 176
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 352, 681
VneI GTGCAC 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 2 cut(s) 93, 558
XspI CTAG 3 cut(s) 92, 710, 778
Zsp2I ATGCAT 2 cut(s) 697, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.