Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017429

Physical Location & Seq

Genomic Coordinates Reverse (-)

40233338 .. 40236459

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGGTCGTTATCTCCATCTCCATGACTCCATCACTCATGCGCCAGCCCTTCCAATACAATGTCATAGCATGCGAATTGCAGGCAACCAGAATGCATGAGGAATTTTTTCTTCCAGCAGAAGTGATAATAGAGCAGGGGAATGTTGTAGATCACCTATATGTTATATGCCATGGTGCACTGGGGAAAAACTTAAACACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATACACCGGAAAGCATGAAATGGAGTTATATGATGGACATGTTTATCTAGTAAAACGTTTGATTGGAGCTGGAGTAGATCCAAAGAAGCATGTTGCTCCATCAAAAGGGTACAAGGATATTACTCGTTTTCTTATGGAAAAGGGGGGAGATGTCAAGATTTCAGATCACCAGTTCACCACTACATGTGTAGCCGCTTCAGAAGGGTTATATTCAATGGCAAAGTTCCTATTAGAAGCAGGAGCACAAGTGTTCTATCAAAGGACAAATTGGGGGAAACTCCACTTGATGAAGCCCCGCATAGGTGGAAATAAGAAGCTAATGCAAGTGCTCGAGTATCCAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAATTAGTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

8.35

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	89 - 161	4.6e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461641
rosa_laevigata	RLG00000024911
rosa_roxburghii	Rroxscaffold_6G00418080 Rroxscaffold_6G00418450
rosa_samantha	Rh2DG442700 Rh3AG110700 Rh3BG113800 Rh3DG115700 Rh4AG097900 Rh4BG126400 Rh4CG107300 Rh6DG317300
rosa_wichuraiana	Rw3G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	426, 529
AclI	AACGTT	1 cut(s)	289
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	338, 533
AflIII	ACRYGT	2 cut(s)	271, 416
AgsI	TTSAA	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	211, 302, 550
AluI	AGCT	3 cut(s)	211, 302, 550
Alw21I	GWGCWC	3 cut(s)	181, 478, 564
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	146, 392, 400
AvaI	CYCGRG	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	181
Bbv12I	GWGCWC	3 cut(s)	181, 478, 564
BccI	CCATC	5 cut(s)	26, 40, 260, 340, 596
BciVI	GTATCC	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	563
BmrFI	CCNGG	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 465, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 533
Bse1I	ACTGG	2 cut(s)	186, 403
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	338, 533
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	186, 403
BseSI	GKGCMC	1 cut(s)	181
BsiHKAI	GWGCWC	3 cut(s)	181, 478, 564
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	202, 240
BslI	CCNNNNNNNGG	2 cut(s)	338, 533
BsmI	GAATGC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	181, 478, 564
Bsp143I	GATC	3 cut(s)	151, 310, 397
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	2 cut(s)	426, 529
BspCNI	CTCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	186, 403
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	151, 310, 397
BssT1I	CCWWGG	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	47, 73, 84
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	154, 313, 400
BstMBI	GATC	3 cut(s)	151, 310, 397
BstNSI	RCATGY	4 cut(s)	75, 275, 326, 420
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	47, 73, 84
CfoI	GCGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	9 cut(s)	25, 40, 72, 98, 173, 248, 272, 323, 417
CviJI	RGCY	6 cut(s)	49, 211, 302, 425, 526, 550
CviKI_1	RGCY	6 cut(s)	49, 211, 302, 425, 526, 550
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	3 cut(s)	153, 312, 399
DpnII	GATC	3 cut(s)	151, 310, 397
Eco130I	CCWWGG	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	9 cut(s)	28, 43, 75, 101, 176, 251, 275, 326, 420
FatI	CATG	9 cut(s)	24, 39, 71, 97, 172, 247, 271, 322, 416
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	2 cut(s)	202, 240
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	9 cut(s)	28, 43, 75, 101, 176, 251, 275, 326, 420
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	28, 218
HpaII	CCGG	2 cut(s)	202, 240
HphI	GGTGA	3 cut(s)	146, 392, 400
Hpy166II	GTNNAC	2 cut(s)	179, 408
Hpy188I	TCNGA	5 cut(s)	223, 397, 433, 592, 601
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	2 cut(s)	179, 408
HpyAV	CCTTC	2 cut(s)	61, 428
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	82, 97, 179, 556
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	9 cut(s)	28, 43, 75, 101, 176, 251, 275, 326, 420
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	151, 310, 397
LmnI	GCTCC	3 cut(s)	299, 334, 473
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	289
MalI	GATC	3 cut(s)	153, 312, 399
MboI	GATC	3 cut(s)	151, 310, 397
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	181, 478, 564
MluCI	AATT	5 cut(s)	77, 104, 499, 611, 619
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	23, 159
MspI	CCGG	2 cut(s)	202, 240
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	151, 310, 397
NlaIII	CATG	9 cut(s)	28, 43, 75, 101, 176, 251, 275, 326, 420
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	4 cut(s)	75, 275, 326, 420
PaeI	GCATGC	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	563
PciI	ACATGT	2 cut(s)	271, 416
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PscI	ACATGT	2 cut(s)	271, 416
Psp1406I	AACGTT	1 cut(s)	289
PspXI	VCTCGAGB	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	23, 159
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	151, 310, 397
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	3 cut(s)	181, 478, 564
SetI	ASST	6 cut(s)	159, 213, 292, 304, 538, 552
Sfr274I	CTCGAG	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	23, 159
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	5 cut(s)	77, 104, 499, 611, 619
SsiI	CCGC	2 cut(s)	426, 529
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	564
TasI	AATT	5 cut(s)	77, 104, 499, 611, 619
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	264, 536
TspRI	CASTG	1 cut(s)	186
VneI	GTGCAC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	4 cut(s)	75, 275, 326, 420
XhoI	CTCGAG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.