Rroxscaffold_6G00418080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017429
Physical Location & Seq
Reverse (-)
39637873 .. 39653142
15270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418080.1

Sequence Viewer

Length: 702 bp
ATGAATGACCAACAAGTTCTGAATATTGAATGTAAAACTCATGTTGAATCCATTGTTAAGGGTGGCGATGGTGGTCGTTATCTCCATCTCCATGACTCCATCACTCATGCGTCAGCCATTCGAACCCAATGTCATAGCATGCGAATTGCAGTCTCGATCTCGGCCTCACTTGCATCCGATCGGGATTTCGGAAGTGAAATTGAAGCCTCAATCAAGCAAGTTTATTCGACAAAGCACTACAGGAACCGGCACTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTTCGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCTTGCAGCATGTTGCTGCATTAAAAGGGTACAAGGATATTACTCGTTTTCTTATCGAAAAAGGGGAGACGTCAAGATATCAGCTGCTTCAGAAGGGTTATATTCAATGGCAGAGTTACTGTTACAAGCAGGAGCATGAGTGTTCTATCAAAGGACAGGTACAATCTGAATGTCCATCTTGTTTGTCGGATAGTTCTGATCACGATGTGATGGTCTCTGTGAAACTAAACGAACTTCAAAGTATGATAAGACTGGGAGTTGTGATCAGGAACCAACTCTTATTCTTATCCAATAAACGTACTCACATACAAATCTTGTGTAAAAGCACAAGAAGTAAAGTGAAGGAGTTTCTACAGCATGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.62

Weight (kDa)

8.61

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 4 cut(s) 273, 365, 495, 634
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 6 cut(s) 29, 47, 203, 284, 440, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw26I GTCTC 4 cut(s) 157, 252, 395, 553
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 340, 350, 418
ArsI GACNNNNNNTTYG 4 cut(s) 115, 147, 251, 283
AsuII TTCGAA 1 cut(s) 121
BbvI GCAGC 3 cut(s) 337, 352, 405
BccI CCATC 5 cut(s) 62, 93, 107, 517, 538
BclI TGATCA 2 cut(s) 532, 597
BcoDI GTCTC 4 cut(s) 157, 252, 395, 553
BfmI CTRYAG 2 cut(s) 238, 686
BisI GCNGC 3 cut(s) 341, 351, 419
BlsI GCNGC 3 cut(s) 342, 352, 420
BmiI GGNNCC 2 cut(s) 245, 605
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 596
Bpu14I TTCGAA 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 404
BsaI GGTCTC 2 cut(s) 252, 553
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 279, 591
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 279, 591
BseXI GCAGC 3 cut(s) 337, 352, 405
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 4 cut(s) 157, 252, 395, 553
BsmBI CGTCTC 1 cut(s) 395
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 2 cut(s) 252, 553
Bsp119I TTCGAA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 156, 178, 532, 597
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 245, 605
BspT104I TTCGAA 1 cut(s) 121
BspTNI GGTCTC 2 cut(s) 252, 553
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 279, 591
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 4 cut(s) 156, 178, 532, 597
BssNI GRCGYC 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 4 cut(s) 159, 181, 535, 600
BstMAI GTCTC 4 cut(s) 157, 252, 395, 553
BstMBI GATC 4 cut(s) 156, 178, 532, 597
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 142, 347
BstSFI CTRYAG 2 cut(s) 238, 686
BstV1I GCAGC 3 cut(s) 337, 352, 405
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 246
CseI GACGC 1 cut(s) 99
Csp6I GTAC 4 cut(s) 272, 364, 494, 633
CviAII CATG 7 cut(s) 41, 92, 107, 139, 344, 470, 692
CviJI RGCY 4 cut(s) 116, 164, 206, 418
CviKI_1 RGCY 4 cut(s) 116, 164, 206, 418
CviQI GTAC 4 cut(s) 272, 364, 494, 633
DpnI GATC 4 cut(s) 158, 180, 534, 599
DpnII GATC 4 cut(s) 156, 178, 532, 597
DraIII CACNNNGTG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco31I GGTCTC 2 cut(s) 252, 553
Eco32I GATATC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 407
EcoRV GATATC 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 7 cut(s) 44, 95, 110, 142, 347, 473, 695
FatI CATG 7 cut(s) 40, 91, 106, 138, 343, 469, 691
FbaI TGATCA 2 cut(s) 532, 597
Fnu4HI GCNGC 3 cut(s) 341, 351, 419
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 341, 351, 419
GluI GCNGC 3 cut(s) 341, 351, 419
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 247
HgaI GACGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 7 cut(s) 44, 95, 110, 142, 347, 473, 695
HinfI GANTC 3 cut(s) 47, 95, 302
HpaII CCGG 1 cut(s) 247
Hpy188I TCNGA 7 cut(s) 21, 178, 191, 426, 502, 523, 532
Hpy188III TCNNGA 6 cut(s) 154, 182, 295, 408, 536, 601
HpyAV CCTTC 2 cut(s) 421, 670
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 404, 631
HpyCH4V TGCA 4 cut(s) 149, 173, 340, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 404, 631
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 7 cut(s) 44, 95, 110, 142, 347, 473, 695
Ksp22I TGATCA 2 cut(s) 532, 597
Kzo9I GATC 4 cut(s) 156, 178, 532, 597
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 226, 260, 260, 276, 449, 476, 572, 586
Lsp1109I GCAGC 3 cut(s) 337, 352, 405
LweI GCATC 1 cut(s) 182
MaeII ACGT 2 cut(s) 404, 631
MaeIII GTNAC 2 cut(s) 449, 455
MalI GATC 4 cut(s) 158, 180, 534, 599
MboI GATC 4 cut(s) 156, 178, 532, 597
MboII GAAGA 1 cut(s) 296
MluCI AATT 2 cut(s) 144, 198
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 2 cut(s) 175, 217
MseI TTAA 2 cut(s) 57, 356
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 4 cut(s) 156, 178, 532, 597
NlaIII CATG 7 cut(s) 44, 95, 110, 142, 347, 473, 695
NlaIV GGNNCC 2 cut(s) 245, 605
NmeAIII GCCGAG 1 cut(s) 140
NspI RCATGY 2 cut(s) 142, 347
NspV TTCGAA 1 cut(s) 121
PaeI GCATGC 1 cut(s) 142
PfeI GAWTC 2 cut(s) 47, 302
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 3 cut(s) 342, 352, 420
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 245, 605
PsyI GACNNNGTC 1 cut(s) 313
PvuI CGATCG 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 4 cut(s) 273, 365, 495, 634
RsaNI GTAC 4 cut(s) 272, 364, 494, 633
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 2 cut(s) 57, 356
SatI GCNGC 3 cut(s) 341, 351, 419
Sau3AI GATC 4 cut(s) 156, 178, 532, 597
SchI GAGTC 1 cut(s) 89
SetI ASST 4 cut(s) 407, 420, 495, 634
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 2 cut(s) 238, 686
SfuI TTCGAA 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 90
SphI GCATGC 1 cut(s) 142
Sse9I AATT 2 cut(s) 144, 198
SspI AATATT 1 cut(s) 25
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 2 cut(s) 407, 634
TaqI TCGA 4 cut(s) 121, 155, 227, 390
TasI AATT 2 cut(s) 144, 198
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 2 cut(s) 47, 302
Tru1I TTAA 2 cut(s) 57, 356
Tru9I TTAA 2 cut(s) 57, 356
TseI GCWGC 3 cut(s) 340, 350, 418
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 313
XceI RCATGY 2 cut(s) 142, 347
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.