Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017429

Physical Location & Seq

Genomic Coordinates Forward (+)

51955699 .. 51982054

Gene Structure 26356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAGCAGCAAGAATTCACCTTATGATTGTGGCCAGTTGATAGTTGATATCACCACTACCACTTTTACCAGAGCGAAGAAGAGGTGGCGCATGGCTTATGCAGCCTTGTATGCTGTAAGGGTGATGCTATCACTTCCCAAAGAGCTTATGTACAAGAGGAGCAACTACAAGGACTACTCTGAGATCATCGAGTATGGATCTTTCGGTGGTTTCCAAGGTCTCAAAGAAAGTCAGCCGGAGAAGGGAGATTCGAACTCTGGTCTGGAGCATGAGGCTAAAAGCTCTTCACCACTGGAGCTACAATCCCCTGCACATGATGAGTCTCGTTCTTACACTTCCCTGGAGCAATATAAGAGTGAATTTAGCTGCTACAATGTGACGGAACCGCCCATTGATGCTCCTAGAGACCCATTGTACAAGACCGAGAGGGACGTTTTTAAGGTTTATTTGACAAAGCACTACAGGAACCGGCGCTTGGGAGACCCTGATTTTGTACTGGATTTTGAAGAGATTTACGTGATTGATTCCAAGACAAAGTCTATTAGCAGAGCAAAAGTCCTGGTCATTAGTAGGGTTTTGTCATTTTACTTCCTTGTTTTGGTTGGAAAAATGAAGTCTCTTGTACTCACTAATATCCTCAGGGTTGTGTCTACTCTGGAACTCATCTCTCGCACACTTTCTCGCACTCTTCTGCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

234

Amino Acids

26.92

Weight (kDa)

9.0

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461641
rosa_laevigata	RLG00000024911
rosa_roxburghii	Rroxscaffold_6G00418080 Rroxscaffold_6G00418450
rosa_samantha	Rh2DG442700 Rh3AG110700 Rh3BG113800 Rh3DG115700 Rh4AG097900 Rh4BG126400 Rh4CG107300 Rh6DG317300
rosa_wichuraiana	Rw3G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	16, 362
AfaI	GTAC	4 cut(s)	155, 419, 498, 627
AfiI	CCNNNNNNNGG	3 cut(s)	245, 478, 601
AgsI	TTSAA	2 cut(s)	509, 701
AjnI	CCWGG	2 cut(s)	342, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	4 cut(s)	148, 285, 301, 369
AluI	AGCT	4 cut(s)	148, 285, 301, 369
Alw26I	GTCTC	5 cut(s)	227, 330, 402, 477, 624
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	9, 104, 369
ApoI	RAATTY	2 cut(s)	16, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	2 cut(s)	93, 477
AsuHPI	GGTGA	5 cut(s)	12, 16, 46, 136, 282
AsuII	TTCGAA	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	21, 116, 356
BciT130I	CCWGG	2 cut(s)	344, 563
BcoDI	GTCTC	5 cut(s)	227, 330, 402, 477, 624
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	478
BisI	GCNGC	3 cut(s)	10, 105, 370
BlsI	GCNGC	3 cut(s)	11, 106, 371
Bme1390I	CCNGG	2 cut(s)	344, 563
BmiI	GGNNCC	2 cut(s)	387, 470
BmrFI	CCNGG	2 cut(s)	344, 563
BmsI	GCATC	2 cut(s)	117, 388
BpmI	CTGGAG	3 cut(s)	287, 317, 365
Bpu14I	TTCGAA	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	520
BsaI	GGTCTC	3 cut(s)	227, 402, 477
BsaJI	CCNNGG	2 cut(s)	217, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 478, 601
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	3 cut(s)	37, 300, 504
Bse21I	CCTNAGG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	344, 563
BseDI	CCNNGG	2 cut(s)	217, 342
BseLI	CCNNNNNNNGG	3 cut(s)	245, 478, 601
BseMII	CTCAG	2 cut(s)	174, 655
BseNI	ACTGG	3 cut(s)	37, 300, 504
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	21, 116, 356
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	239, 472
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	245, 478, 601
BsmAI	GTCTC	5 cut(s)	227, 330, 402, 477, 624
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	3 cut(s)	227, 402, 477
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1407I	TGTACA	2 cut(s)	153, 417
Bsp143I	GATC	2 cut(s)	186, 200
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	2 cut(s)	175, 654
BspLI	GGNNCC	2 cut(s)	387, 470
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	254
BspTNI	GGTCTC	3 cut(s)	227, 402, 477
BsrFI	RCCGGY	1 cut(s)	471
BsrGI	TGTACA	2 cut(s)	153, 417
BsrI	ACTGG	3 cut(s)	37, 300, 504
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	217, 342
BssMI	GATC	2 cut(s)	186, 200
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	344, 563
Bst6I	CTCTTC	4 cut(s)	77, 292, 504, 696
BstAUI	TGTACA	2 cut(s)	153, 417
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	183, 641
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	93, 477
BstKTI	GATC	2 cut(s)	189, 203
BstMAI	GTCTC	5 cut(s)	227, 330, 402, 477, 624
BstMBI	GATC	2 cut(s)	186, 200
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 113
BstNI	CCWGG	2 cut(s)	344, 563
BstSCI	CCNGG	2 cut(s)	342, 561
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	21, 116, 356
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
Bsu36I	CCTNAGG	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	293
CfoI	GCGC	2 cut(s)	93, 477
Cfr10I	RCCGGY	1 cut(s)	471
Csp6I	GTAC	4 cut(s)	154, 418, 497, 626
CviAII	CATG	3 cut(s)	94, 272, 317
CviJI	RGCY	9 cut(s)	36, 98, 107, 148, 238, 278, 285, 301, 369
CviKI_1	RGCY	9 cut(s)	36, 98, 107, 148, 238, 278, 285, 301, 369
CviQI	GTAC	4 cut(s)	154, 418, 497, 626
DdeI	CTNAG	2 cut(s)	183, 641
DpnI	GATC	2 cut(s)	188, 202
DpnII	GATC	2 cut(s)	186, 200
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	4 cut(s)	77, 292, 504, 696
EarI	CTCTTC	4 cut(s)	77, 292, 504, 696
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	3 cut(s)	227, 402, 477
Eco32I	GATATC	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	342, 561
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	97, 275, 320
FaiI	YATR	9 cut(s)	27, 95, 102, 114, 152, 198, 273, 318, 354
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	3 cut(s)	93, 271, 316
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	3 cut(s)	10, 105, 370
Fsp4HI	GCNGC	3 cut(s)	10, 105, 370
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	2 cut(s)	92, 476
GluI	GCNGC	3 cut(s)	10, 105, 370
GsuI	CTGGAG	3 cut(s)	287, 317, 365
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	239, 472
HhaI	GCGC	2 cut(s)	93, 477
Hin1II	CATG	3 cut(s)	97, 275, 320
Hin6I	GCGC	2 cut(s)	91, 475
HinP1I	GCGC	2 cut(s)	91, 475
HinfI	GANTC	3 cut(s)	251, 323, 527
HpaII	CCGG	2 cut(s)	239, 472
HphI	GGTGA	5 cut(s)	12, 16, 46, 136, 282
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	266, 659
Hpy8I	GTNNAC	1 cut(s)	654
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	435, 519
HpyCH4V	TGCA	2 cut(s)	104, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 113
HpyF3I	CTNAG	2 cut(s)	183, 641
HpySE526I	ACGT	2 cut(s)	435, 519
Hsp92II	CATG	3 cut(s)	97, 275, 320
HspAI	GCGC	2 cut(s)	91, 475
Kzo9I	GATC	2 cut(s)	186, 200
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	5 cut(s)	162, 268, 298, 346, 406
Lsp1109I	GCAGC	3 cut(s)	21, 116, 356
LweI	GCATC	2 cut(s)	117, 388
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	435, 519
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	188, 202
MboI	GATC	2 cut(s)	186, 200
MboII	GAAGA	5 cut(s)	91, 94, 279, 521, 683
MflI	RGATCY	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	2 cut(s)	16, 362
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	5 cut(s)	78, 153, 268, 423, 650
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	239, 472
MspR9I	CCNGG	2 cut(s)	344, 563
MvaI	CCWGG	2 cut(s)	344, 563
MwoI	GCNNNNNNNGC	2 cut(s)	104, 113
NdeII	GATC	2 cut(s)	186, 200
NlaIII	CATG	3 cut(s)	97, 275, 320
NlaIV	GGNNCC	2 cut(s)	387, 470
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	251, 527
PflFI	GACNNNGTC	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	11, 106, 371
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	520
Psp6I	CCWGG	2 cut(s)	342, 561
PspGI	CCWGG	2 cut(s)	342, 561
PspN4I	GGNNCC	2 cut(s)	387, 470
PsuI	RGATCY	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	538
RsaI	GTAC	4 cut(s)	155, 419, 498, 627
RsaNI	GTAC	4 cut(s)	154, 418, 497, 626
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	10, 105, 370
Sau3AI	GATC	2 cut(s)	186, 200
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	344, 563
SfaNI	GCATC	2 cut(s)	117, 388
SfcI	CTRYAG	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	254
Sse9I	AATT	2 cut(s)	16, 362
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	342, 561
StyI	CCWWGG	1 cut(s)	217
TaiI	ACGT	2 cut(s)	438, 522
TaqI	TCGA	2 cut(s)	192, 254
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	2 cut(s)	16, 362
TatI	WGTACW	4 cut(s)	153, 417, 496, 625
TfiI	GAWTC	2 cut(s)	251, 527
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	9, 104, 369
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	629
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	300
Tth111I	GACNNNGTC	1 cut(s)	538
XapI	RAATTY	2 cut(s)	16, 362
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.