Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0020679

Physical Location & Seq

Genomic Coordinates Forward (+)

41800834 .. 41801372

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGACCATACAGGGGTGAAAAAAGAAAAGAAAAATTAATAATAATTTCCCCTCTCCCAAAACCAACAATGAGCAAAGGAGCCAAGAGAAAGGCTCGGCCGGCGGCGACGGAGGAGGCCAAAGCCACCACCACACGCGTCAAGGCCTCTCAGCAGCATCCGGAGGCGGAGCCTCAGTACGTGGAGGAGAAGCGCAACCTTCAAGACCTATGGAAGGCAGCATTCCCGGTTGGGACCGAGTGGGATCAGTTGGACTCGGTCTATAAATACAACTGGGATTTCTCGAATCTCGAGAAGGAATTTGAAGAGGGGGGAAAGTTGTACGGAATTGGAACGACCAACAAAGTCTACATCCTCGCCGCTACGGAGGCTTCGTCGCCGTCGCTACCTGTGCTGATTCCTACGCTGGCAGCGGTCGTGGCTCCTCGGCCGCCTTCGATGGAGATTGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.79

Weight (kDa)

9.02

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020679)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025073
rosa_multiflora	Rmu_sc0000240.1_g000015
rosa_roxburghii	Rroxscaffold_6G00420160
rosa_samantha	Rh3AG095500 Rh3BG098000 Rh3CG099800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	5 cut(s)	104, 167, 360, 413, 431
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	98, 428
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	179, 323
AfiI	CCNNNNNNNGG	2 cut(s)	14, 214
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	203, 305
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	4 cut(s)	98, 117, 144, 428
ApeKI	GCWGC	3 cut(s)	154, 218, 410
ApoI	RAATTY	1 cut(s)	299
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	5, 234
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	5, 234
BbvI	GCAGC	3 cut(s)	166, 230, 422
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	227
BisI	GCNGC	6 cut(s)	105, 155, 219, 360, 411, 431
BlsI	GCNGC	6 cut(s)	106, 156, 220, 361, 412, 432
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	5, 234
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	5, 234
BmiI	GGNNCC	5 cut(s)	6, 82, 171, 235, 423
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 214
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	2 cut(s)	157, 351
BseLI	CCNNNNNNNGG	2 cut(s)	14, 214
BseMII	CTCAG	2 cut(s)	164, 188
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	3 cut(s)	128, 200, 414
BseX3I	CGGCCG	2 cut(s)	98, 428
BseXI	GCAGC	3 cut(s)	166, 230, 422
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	3 cut(s)	101, 417, 431
BshFI	GGCC	4 cut(s)	100, 119, 146, 430
BsiEI	CGRYCG	3 cut(s)	101, 417, 431
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	101, 161, 227
BslFI	GGGAC	2 cut(s)	18, 247
BslI	CCNNNNNNNGG	2 cut(s)	14, 214
BsmFI	GGGAC	2 cut(s)	18, 247
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	100, 119, 146, 430
BsoBI	CYCGRG	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	5 cut(s)	104, 167, 360, 413, 431
BspANI	GGCC	4 cut(s)	100, 119, 146, 430
BspCNI	CTCAG	2 cut(s)	163, 187
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	6, 82, 171, 235, 423
BspPI	GGATC	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	102, 408
BstDEI	CTNAG	2 cut(s)	150, 174
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	157, 351
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	3 cut(s)	101, 417, 431
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 368, 391, 419
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	166, 230, 422
BstZI	CGGCCG	2 cut(s)	98, 428
BsuRI	GGCC	4 cut(s)	100, 119, 146, 430
BtsCI	GGATG	2 cut(s)	157, 351
Cac8I	GCNNGC	2 cut(s)	102, 408
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	5, 234
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	178, 322
CviQI	GTAC	2 cut(s)	178, 322
DdeI	CTNAG	2 cut(s)	150, 174
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	98, 428
EagI	CGGCCG	2 cut(s)	98, 428
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	182
EclXI	CGGCCG	2 cut(s)	98, 428
Eco147I	AGGCCT	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	5, 234
Eco52I	CGGCCG	2 cut(s)	98, 428
Eco88I	CYCGRG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	212
FaiI	YATR	3 cut(s)	10, 211, 264
FaqI	GGGAC	2 cut(s)	18, 247
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	105, 155, 219, 360, 411, 431
FokI	GGATG	2 cut(s)	144, 338
Fsp4HI	GCNGC	6 cut(s)	105, 155, 219, 360, 411, 431
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	6 cut(s)	105, 155, 219, 360, 411, 431
HaeIII	GGCC	4 cut(s)	100, 119, 146, 430
HapII	CCGG	3 cut(s)	101, 161, 227
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	254, 286, 397
HpaII	CCGG	3 cut(s)	101, 161, 227
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188III	TCNNGA	5 cut(s)	161, 203, 283, 290, 292
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	3 cut(s)	112, 379, 385
HpyAV	CCTTC	4 cut(s)	208, 209, 289, 444
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 368, 391, 419
HpyF3I	CTNAG	2 cut(s)	150, 174
HpySE526I	ACGT	1 cut(s)	180
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	160
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	80, 169, 427
LpnPI	CCDG	6 cut(s)	114, 174, 240, 259, 392, 402
Lsp1109I	GCAGC	3 cut(s)	166, 230, 422
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	180
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	317
MluCI	AATT	4 cut(s)	35, 45, 299, 327
MluI	ACGCGT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	231
MroI	TCCGGA	1 cut(s)	160
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	3 cut(s)	101, 161, 227
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	221
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	101, 368, 391, 419
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	244
NgoMIV	GCCGGC	1 cut(s)	100
NlaIV	GGNNCC	5 cut(s)	6, 82, 171, 235, 423
NmeAIII	GCCGAG	2 cut(s)	76, 406
PaeR7I	CTCGAG	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	286, 397
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	6 cut(s)	106, 156, 220, 361, 412, 432
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	181
PshBI	ATTAAT	1 cut(s)	38
PspN4I	GGNNCC	5 cut(s)	6, 82, 171, 235, 423
PspPI	GGNCC	2 cut(s)	5, 234
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	179, 323
RsaNI	GTAC	2 cut(s)	178, 322
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	6 cut(s)	105, 155, 219, 360, 411, 431
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	5, 234
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	4 cut(s)	183, 201, 210, 391
SfaNI	GCATC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	5, 234
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	35, 45, 299, 327
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	5 cut(s)	104, 167, 360, 413, 431
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	284, 291, 437
TaqII	GACCGA	2 cut(s)	247, 251
TasI	AATT	4 cut(s)	35, 45, 299, 327
TauI	GCSGC	3 cut(s)	107, 362, 433
TfiI	GAWTC	2 cut(s)	286, 397
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseI	GCWGC	3 cut(s)	154, 218, 410
TspGWI	ACGGA	3 cut(s)	125, 339, 380
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	5, 234
VspI	ATTAAT	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.