Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0020679

Physical Location & Seq

Genomic Coordinates Forward (+)

7875122 .. 7875754

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGCAAAGGAGCCAAGAGAAAGGCTCGGCCGGCGGCGACGGAGGAGGCCAAAGCCGCCACCACATGCACCAAGCGCGTCAAAGCCTCTCAGCAGCATCCGGAGGCGGAGCCTCAGTACTTGGAGGAGAAGCGCAACCTTCAAGACCTTTGGAAGGCAGCATTCCCGGTCGGGACCGAGTGGGATCAGTTGGACTCGGTCTACAAATACAACTGGGATTTCTCGAATCTCGAGAAGGAATTTGAAGAAGGGGGAAAGTTCTACGGGATTGGGACCGGCAACAAAGTCTACATCCTCGCCGCTACGGAGACTTCGTCTTCGCCGTCGCTGCCTGTGCTGATTCCGACGCTGGCGGCTGTCGTGGCGCCTAGGCCACCGTCAATGGAGATTGGGATAAGGTCGGTGCAGAGAGGAGAGGAGATAGTTCCAATGAAGCATATGATCGAAGATGGACTGGATCCCCTACATTCCTATGGAGCTCAGAGAAGGCTGGAACTCCGAAAGAGCGGCCAAGTCTGGTTCGAACTTGCCTCAGATTTTCGTGCTGGGATGTACTCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCGTTGGATGAAGTTCCAGTACTGCGTGCCGTATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

5.18

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020679)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025073
rosa_multiflora	Rmu_sc0000240.1_g000015
rosa_roxburghii	Rroxscaffold_6G00420160
rosa_samantha	Rh3AG095500 Rh3BG098000 Rh3CG099800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	507
AccI	GTMKAC	2 cut(s)	201, 288
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	6 cut(s)	35, 57, 107, 300, 353, 507
AclWI	GGATC	3 cut(s)	192, 452, 465
AcoI	YGGCCR	2 cut(s)	29, 508
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	365
AfaI	GTAC	3 cut(s)	119, 554, 612
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	143, 245, 575
AluBI	AGCT	2 cut(s)	479, 571
AluI	AGCT	2 cut(s)	479, 571
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	192, 452, 465
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	4 cut(s)	29, 48, 371, 508
ApeKI	GCWGC	3 cut(s)	94, 158, 328
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspA2I	CCTAGG	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	78, 135, 367
AspS9I	GGNCC	3 cut(s)	174, 273, 590
AsuC2I	CCSGG	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	3 cut(s)	174, 273, 590
AvrII	CCTAGG	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	481
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	106, 170, 315
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	307, 605
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	8 cut(s)	36, 57, 95, 159, 300, 329, 354, 508
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	8 cut(s)	37, 58, 96, 160, 301, 330, 355, 509
BmcAI	AGTACT	2 cut(s)	119, 612
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	174, 273, 590
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	174, 273, 590
BmiI	GGNNCC	6 cut(s)	13, 111, 175, 274, 366, 459
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu14I	TTCGAA	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	31, 275
Bse1I	ACTGG	3 cut(s)	218, 459, 608
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	4 cut(s)	97, 291, 555, 604
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	5 cut(s)	104, 128, 494, 546, 570
BseNI	ACTGG	3 cut(s)	218, 459, 608
BseRI	GAGGAG	4 cut(s)	59, 140, 426, 431
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	106, 170, 315
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	32, 171
BshFI	GGCC	4 cut(s)	31, 50, 373, 510
BshNI	GGYRCC	1 cut(s)	364
BsiEI	CGRYCG	2 cut(s)	32, 171
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	32, 101, 167, 276
BslFI	GGGAC	2 cut(s)	187, 286
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	187, 286
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	31, 50, 373, 510
BsoBI	CYCGRG	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	184, 441, 457
BspACI	CCGC	6 cut(s)	35, 57, 107, 300, 353, 507
BspANI	GGCC	4 cut(s)	31, 50, 373, 510
BspCNI	CTCAG	5 cut(s)	103, 127, 493, 545, 569
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	6 cut(s)	13, 111, 175, 274, 366, 459
BspPI	GGATC	3 cut(s)	192, 452, 465
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	31, 275
BsrI	ACTGG	3 cut(s)	218, 459, 608
BssAI	RCCGGY	2 cut(s)	31, 275
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	3 cut(s)	184, 441, 457
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	378, 594
BstACI	GRCGYC	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	4 cut(s)	33, 351, 569, 618
BstDEI	CTNAG	5 cut(s)	90, 114, 480, 532, 556
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	4 cut(s)	97, 291, 555, 604
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	3 cut(s)	78, 135, 367
BstKTI	GATC	3 cut(s)	187, 444, 460
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	184, 441, 457
BstMCI	CGRYCG	2 cut(s)	32, 171
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 56, 75, 328, 334, 362
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	106, 170, 315
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	31, 50, 373, 510
BtsCI	GGATG	4 cut(s)	97, 291, 555, 604
Cac8I	GCNNGC	4 cut(s)	33, 351, 569, 618
CfoI	GCGC	3 cut(s)	78, 135, 367
Cfr10I	RCCGGY	2 cut(s)	31, 275
Cfr13I	GGNCC	3 cut(s)	174, 273, 590
CseI	GACGC	2 cut(s)	67, 355
Csp6I	GTAC	3 cut(s)	118, 553, 611
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	3 cut(s)	118, 553, 611
DdeI	CTNAG	5 cut(s)	90, 114, 480, 532, 556
DinI	GGCGCC	1 cut(s)	366
DpnI	GATC	3 cut(s)	186, 443, 459
DpnII	GATC	3 cut(s)	184, 441, 457
EaeI	YGGCCR	2 cut(s)	29, 508
EagI	CGGCCG	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	479
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	3 cut(s)	174, 273, 590
Eco52I	CGGCCG	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	481
EgeI	GGCGCC	1 cut(s)	366
EheI	GGCGCC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	69
FaiI	YATR	4 cut(s)	67, 438, 440, 474
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	2 cut(s)	187, 286
FatI	CATG	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	438
FblI	GTMKAC	2 cut(s)	201, 288
Fnu4HI	GCNGC	8 cut(s)	36, 57, 95, 159, 300, 329, 354, 508
FokI	GGATG	4 cut(s)	84, 278, 562, 611
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	8 cut(s)	36, 57, 95, 159, 300, 329, 354, 508
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	3 cut(s)	77, 134, 366
GluI	GCNGC	8 cut(s)	36, 57, 95, 159, 300, 329, 354, 508
GsaI	CCCAGC	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	4 cut(s)	31, 50, 373, 510
HapII	CCGG	4 cut(s)	32, 101, 167, 276
HgaI	GACGC	2 cut(s)	67, 355
HhaI	GCGC	3 cut(s)	78, 135, 367
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	1 cut(s)	69
Hin6I	GCGC	3 cut(s)	76, 133, 365
HinP1I	GCGC	3 cut(s)	76, 133, 365
HinfI	GANTC	3 cut(s)	194, 226, 340
HpaII	CCGG	4 cut(s)	32, 101, 167, 276
Hpy166II	GTNNAC	2 cut(s)	202, 289
Hpy188I	TCNGA	5 cut(s)	345, 483, 500, 535, 559
Hpy188III	TCNNGA	6 cut(s)	101, 143, 172, 223, 230, 232
Hpy8I	GTNNAC	2 cut(s)	202, 289
Hpy99I	CGWCG	3 cut(s)	43, 328, 349
HpyAV	CCTTC	7 cut(s)	148, 149, 229, 242, 480, 557, 578
HpyCH4III	ACNGT	2 cut(s)	378, 594
HpyCH4V	TGCA	2 cut(s)	69, 406
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 56, 75, 328, 334, 362
HpyF3I	CTNAG	5 cut(s)	90, 114, 480, 532, 556
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	69
HspAI	GCGC	3 cut(s)	76, 133, 365
KasI	GGCGCC	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	184, 441, 457
LmnI	GCTCC	3 cut(s)	11, 109, 476
Lsp1109I	GCAGC	3 cut(s)	106, 170, 315
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	369
MalI	GATC	3 cut(s)	186, 443, 459
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	3 cut(s)	184, 441, 457
MboII	GAAGA	3 cut(s)	257, 309, 458
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	3 cut(s)	171, 368, 576
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	4 cut(s)	32, 101, 167, 276
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	6 cut(s)	32, 56, 75, 328, 334, 362
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	3 cut(s)	184, 441, 457
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	6 cut(s)	13, 111, 175, 274, 366, 459
NmeAIII	GCCGAG	1 cut(s)	7
NspI	RCATGY	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 320
PctI	GAATGC	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	226, 340
PflFI	GACNNNGTC	2 cut(s)	197, 313
PkrI	GCNGC	8 cut(s)	37, 58, 96, 160, 301, 330, 355, 509
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	6 cut(s)	13, 111, 175, 274, 366, 459
PspPI	GGNCC	3 cut(s)	174, 273, 590
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	2 cut(s)	197, 313
RsaI	GTAC	3 cut(s)	119, 554, 612
RsaNI	GTAC	3 cut(s)	118, 553, 611
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	481
SatI	GCNGC	8 cut(s)	36, 57, 95, 159, 300, 329, 354, 508
Sau3AI	GATC	3 cut(s)	184, 441, 457
Sau96I	GGNCC	3 cut(s)	174, 273, 590
ScaI	AGTACT	2 cut(s)	119, 612
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	5 cut(s)	141, 150, 401, 481, 573
SfaNI	GCATC	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	3 cut(s)	174, 273, 590
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	6 cut(s)	35, 57, 107, 300, 353, 507
SspDI	GGCGCC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	378, 594
TaqI	TCGA	4 cut(s)	224, 231, 444, 522
TaqII	GACCGA	2 cut(s)	187, 191
TasI	AATT	1 cut(s)	239
TatI	WGTACW	3 cut(s)	117, 552, 610
TauI	GCSGC	5 cut(s)	38, 59, 302, 356, 510
TfiI	GAWTC	2 cut(s)	226, 340
TseI	GCWGC	3 cut(s)	94, 158, 328
TspDTI	ATGAA	3 cut(s)	446, 597, 615
TspGWI	ACGGA	2 cut(s)	56, 320
Tth111I	GACNNNGTC	2 cut(s)	197, 313
VpaK11BI	GGWCC	3 cut(s)	174, 273, 590
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	230
XmaJI	CCTAGG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	201, 288
XspI	CTAG	1 cut(s)	369
ZrmI	AGTACT	2 cut(s)	119, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.