Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0020679

Physical Location & Seq

Genomic Coordinates Reverse (-)

41485031 .. 41485426

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCAAAGGAGCCAAGAGAAAGGCTCGGCCGGCGGCGACGGAGGAGGCCAAAGCCGCCACCACACCCGCCAAGCGCGTTAAGGCCTCTCAGCAGCATCCGGAGGCGGAGCCTCAGTACGTGGAGGAGAAGCGCAACCTTCAAGACCTTTGGAAGGCAGCATTCCCGGTCGGGACCGAGTGGGATCAGTTGGACTCGGTCTACAAATACAACTGGGATTTCTCGAATCTCGAGAAGGAATTTGAAGAAGGGGGAAAGTTTTACGGAATTGGAACGACCAACAAAGTCTACATCCTCGCCGCTACGGAGACTTCGTCGTCGCCGTCGCTGCCTGTGCTGATTCCGACGCTGGGGCGGTCGTGGCGCCTCGGCCGCCATCAATGGAGATTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.83

Weight (kDa)

9.33

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020679)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025073
rosa_multiflora	Rmu_sc0000240.1_g000015
rosa_roxburghii	Rroxscaffold_6G00420160
rosa_samantha	Rh3AG095500 Rh3BG098000 Rh3CG099800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	363
AccI	GTMKAC	2 cut(s)	201, 288
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	7 cut(s)	35, 57, 69, 107, 300, 355, 373
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	29, 370
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	154, 350
AgsI	TTSAA	2 cut(s)	143, 245
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	4 cut(s)	29, 48, 84, 370
ApeKI	GCWGC	3 cut(s)	94, 158, 328
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	3 cut(s)	78, 135, 366
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	106, 170, 315
BccI	CCATC	1 cut(s)	384
BceAI	ACGGC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	7 cut(s)	36, 57, 95, 159, 300, 329, 373
BlsI	GCNGC	7 cut(s)	37, 58, 96, 160, 301, 330, 374
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	4 cut(s)	13, 111, 175, 365
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 350
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	97, 291
BseLI	CCNNNNNNNGG	2 cut(s)	154, 350
BseMII	CTCAG	2 cut(s)	104, 128
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	59, 140
BseX3I	CGGCCG	2 cut(s)	29, 370
BseXI	GCAGC	3 cut(s)	106, 170, 315
BseYI	CCCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	4 cut(s)	32, 171, 359, 373
BshFI	GGCC	4 cut(s)	31, 50, 86, 372
BshNI	GGYRCC	1 cut(s)	363
BsiEI	CGRYCG	4 cut(s)	32, 171, 359, 373
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	32, 101, 167
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	154, 350
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	31, 50, 86, 372
BsoBI	CYCGRG	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	7 cut(s)	35, 57, 69, 107, 300, 355, 373
BspANI	GGCC	4 cut(s)	31, 50, 86, 372
BspCNI	CTCAG	2 cut(s)	103, 127
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	13, 111, 175, 365
BspPI	GGATC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	90, 114
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	97, 291
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	3 cut(s)	78, 135, 366
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	4 cut(s)	32, 171, 359, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 56, 328, 334, 361, 372
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	106, 170, 315
BstZI	CGGCCG	2 cut(s)	29, 370
BsuRI	GGCC	4 cut(s)	31, 50, 86, 372
BtsCI	GGATG	2 cut(s)	97, 291
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	3 cut(s)	78, 135, 366
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	8 cut(s)	14, 26, 31, 50, 56, 86, 112, 372
CviKI_1	RGCY	8 cut(s)	14, 26, 31, 50, 56, 86, 112, 372
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	90, 114
DinI	GGCGCC	1 cut(s)	365
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	29, 370
EagI	CGGCCG	2 cut(s)	29, 370
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	2 cut(s)	29, 370
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	174
Eco52I	CGGCCG	2 cut(s)	29, 370
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	365
EheI	GGCGCC	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	187
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	201, 288
Fnu4HI	GCNGC	7 cut(s)	36, 57, 95, 159, 300, 329, 373
FokI	GGATG	2 cut(s)	84, 278
Fsp4HI	GCNGC	7 cut(s)	36, 57, 95, 159, 300, 329, 373
GlaI	GCGC	3 cut(s)	77, 134, 365
GluI	GCNGC	7 cut(s)	36, 57, 95, 159, 300, 329, 373
GsaI	CCCAGC	1 cut(s)	353
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	31, 50, 86, 372
HapII	CCGG	3 cut(s)	32, 101, 167
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	3 cut(s)	78, 135, 366
Hin1I	GRCGYC	1 cut(s)	364
Hin6I	GCGC	3 cut(s)	76, 133, 364
HinP1I	GCGC	3 cut(s)	76, 133, 364
HinfI	GANTC	3 cut(s)	194, 226, 340
HpaII	CCGG	3 cut(s)	32, 101, 167
Hpy166II	GTNNAC	2 cut(s)	202, 289
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	6 cut(s)	101, 143, 172, 223, 230, 232
Hpy8I	GTNNAC	2 cut(s)	202, 289
Hpy99I	CGWCG	5 cut(s)	43, 319, 322, 328, 349
HpyAV	CCTTC	4 cut(s)	148, 149, 229, 242
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 56, 328, 334, 361, 372
HpyF3I	CTNAG	2 cut(s)	90, 114
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	364
HspAI	GCGC	3 cut(s)	76, 133, 364
KasI	GGCGCC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	11, 109
LpnPI	CCDG	6 cut(s)	45, 114, 180, 199, 335, 345
Lsp1109I	GCAGC	3 cut(s)	106, 170, 315
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	2 cut(s)	239, 267
Mly113I	GGCGCC	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	171, 368
MnlI	CCTC	8 cut(s)	37, 40, 97, 97, 118, 123, 305, 377
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	31
MseI	TTAA	1 cut(s)	81
MspI	CCGG	3 cut(s)	32, 101, 167
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	6 cut(s)	32, 56, 328, 334, 361, 372
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	184
NgoMIV	GCCGGC	1 cut(s)	31
NlaIV	GGNNCC	4 cut(s)	13, 111, 175, 365
NmeAIII	GCCGAG	2 cut(s)	7, 348
PaeR7I	CTCGAG	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 320
PctI	GAATGC	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	226, 340
PflFI	GACNNNGTC	2 cut(s)	197, 313
PkrI	GCNGC	7 cut(s)	37, 58, 96, 160, 301, 330, 374
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	13, 111, 175, 365
PspPI	GGNCC	1 cut(s)	174
PsyI	GACNNNGTC	2 cut(s)	197, 313
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	7 cut(s)	36, 57, 95, 159, 300, 329, 373
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	3 cut(s)	123, 141, 150
SfaNI	GCATC	1 cut(s)	106
SfoI	GGCGCC	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	239, 267
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	7 cut(s)	35, 57, 69, 107, 300, 355, 373
SspDI	GGCGCC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	224, 231
TaqII	GACCGA	2 cut(s)	187, 191
TasI	AATT	2 cut(s)	239, 267
TauI	GCSGC	4 cut(s)	38, 59, 302, 375
TfiI	GAWTC	2 cut(s)	226, 340
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	3 cut(s)	94, 158, 328
TspGWI	ACGGA	3 cut(s)	56, 279, 320
Tth111I	GACNNNGTC	2 cut(s)	197, 313
VpaK11BI	GGWCC	1 cut(s)	174
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	201, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.