RLG00000025129

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0025378
Physical Location & Seq
Reverse (-)
42174079 .. 42175383
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025129

Sequence Viewer

Length: 957 bp
ATGCTACTGAAAACCGGTGATGGGCAATTCTTAGAAACTAATGATCTTTCAAACCCAGCCAATCCAGTTGAGTCAAATTCTACAGGTTTTGATATGCTTGATGAGTACCTTACATACTTCTATGCGGATGATGACATCTCTCAGTACATTGATTTTGACTCCTGTGGAATGCTGGGGAATGAAAATACTGTTCCTAGTGAACCTCTGGTTGAGCAGAAGTCTGTTATGGGTGAAACTAAGCCACTATATTGCGAAGAACAGAAGTACTTTGACATACCAGAGCATTATGCGATGGATGCAAATGAACTGGCAGAAGACAGAGACAAGATCTTTTATGGGAATACTAGAGAACCTTCCAGCCATGTGATAACTGAATCCCTGGACGGCCTTGATGTGCTCTGTCGGGCCAAGAGACCTCTAGAACTTGTTTGTTCATATGGAGAAGAGAATCATAATGATGAAGAGCCTACTAAGTTACAGGACATGATTGCACCAGATACCATGAAAAGTAAAAACATAAAAACCACAGTAACCAAAGGATTTTCAGAAGACAACCAGCATGGGGGTTTATCATTCAGCATGGTGGTGCTATTCTTCGTTTCTCTCTTTCTTCTTCTTTTGTTTGCATTAATCAAATTTGCCACAACTGATGATGATTTCACTTTGATGTCCAAACACCATGCCATTGAAGACAAAGTTATTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGATTCTTGCCAAGCAACTTGCAAATTTGGGAGCCAAGCTCATTATCTCCGCTTGTAATAGTGAAGCTGAATTAGCAGAAATCTCTGAGGAGATCTGCATATTGTTGTTTTTAAGTGATCGATTTCTGCAGCTGACTGTTGGTGTGTGGGTGGCCTTTGGAGGTTTTGTATCTGTTGTCTTTCGAGAGATTTGTTATACCCGAATTAATGCAACAGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

319

Amino Acids

35.57

Weight (kDa)

4.4

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 232 - 276 3.6e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025378)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025129 RLG00000030164
rosa_samantha Rh3CG112100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 783
AcsI RAATTY 3 cut(s) 76, 635, 757
AfaI GTAC 3 cut(s) 107, 146, 266
AfiI CCNNNNNNNGG 2 cut(s) 21, 562
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 51, 689
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 3 cut(s) 772, 800, 865
AluI AGCT 3 cut(s) 772, 800, 865
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 315, 406
AoxI GGCC 3 cut(s) 385, 405, 885
ApeKI GCWGC 1 cut(s) 862
ApoI RAATTY 3 cut(s) 76, 635, 757
AseI ATTAAT 2 cut(s) 629, 939
AsiGI ACCGGT 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 29, 242
AsuNHI GCTAGC 1 cut(s) 716
BbsI GAAGAC 3 cut(s) 321, 555, 696
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 874
BccI CCATC 2 cut(s) 14, 286
BceAI ACGGC 2 cut(s) 400, 705
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 315, 406
BfaI CTAG 4 cut(s) 195, 345, 419, 717
BfmI CTRYAG 2 cut(s) 81, 860
BglII AGATCT 2 cut(s) 327, 825
BisI GCNGC 1 cut(s) 863
BlsI GCNGC 1 cut(s) 864
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 720
BpiI GAAGAC 3 cut(s) 321, 555, 696
BplI GAGNNNNNCTC 2 cut(s) 756, 788
Bsa29I ATCGAT 1 cut(s) 853
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 378, 721
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 562
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 65, 312, 715
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 853
BseDI CCNNGG 2 cut(s) 378, 721
BseGI GGATG 2 cut(s) 133, 301
BseLI CCNNNNNNNGG 2 cut(s) 21, 562
BseMII CTCAG 2 cut(s) 155, 810
BseNI ACTGG 3 cut(s) 65, 312, 715
BseRI GAGGAG 1 cut(s) 836
BseXI GCAGC 1 cut(s) 874
BseYI CCCAGC 2 cut(s) 55, 172
BshFI GGCC 3 cut(s) 387, 407, 887
BshTI ACCGGT 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 21, 562
BsmAI GTCTC 2 cut(s) 315, 406
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 3 cut(s) 387, 407, 887
Bso31I GGTCTC 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 4 cut(s) 43, 327, 825, 850
BspACI CCGC 2 cut(s) 125, 783
BspANI GGCC 3 cut(s) 387, 407, 887
BspCNI CTCAG 2 cut(s) 154, 811
BspDI ATCGAT 1 cut(s) 853
BspLI GGNNCC 1 cut(s) 766
BspMAI CTGCAG 1 cut(s) 864
BspOI GCTAGC 1 cut(s) 720
BspQI GCTCTTC 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 3 cut(s) 65, 312, 715
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 378, 721
BssMI GATC 4 cut(s) 43, 327, 825, 850
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 190, 529, 871
Bst6I CTCTTC 2 cut(s) 438, 456
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 5 cut(s) 31, 141, 237, 471, 819
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 2 cut(s) 133, 301
BstKTI GATC 4 cut(s) 46, 330, 828, 853
BstMAI GTCTC 2 cut(s) 315, 406
BstMBI GATC 4 cut(s) 43, 327, 825, 850
BstMWI GCNNNNNNNGC 2 cut(s) 296, 806
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 81, 860
BstV1I GCAGC 1 cut(s) 874
BstV2I GAAGAC 3 cut(s) 321, 555, 696
BstX2I RGATCY 2 cut(s) 327, 825
BstYI RGATCY 2 cut(s) 327, 825
Bsu15I ATCGAT 1 cut(s) 853
BsuRI GGCC 3 cut(s) 387, 407, 887
BsuTUI ATCGAT 1 cut(s) 853
BtgI CCRYGG 1 cut(s) 721
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 133, 301
Cac8I GCNNGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 405
ClaI ATCGAT 1 cut(s) 853
Csp6I GTAC 3 cut(s) 106, 145, 265
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 6 cut(s) 362, 484, 502, 560, 580, 680
CviQI GTAC 3 cut(s) 106, 145, 265
DdeI CTNAG 5 cut(s) 31, 141, 237, 471, 819
DpnI GATC 4 cut(s) 45, 329, 827, 852
DpnII GATC 4 cut(s) 43, 327, 825, 850
Eam1104I CTCTTC 2 cut(s) 438, 456
EarI CTCTTC 2 cut(s) 438, 456
Eco31I GGTCTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 378
FaeI CATG 6 cut(s) 365, 487, 505, 563, 583, 683
FatI CATG 6 cut(s) 361, 483, 501, 559, 579, 679
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 863
FokI GGATG 2 cut(s) 140, 308
Fsp4HI GCNGC 1 cut(s) 863
FspBI CTAG 4 cut(s) 195, 345, 419, 717
GluI GCNGC 1 cut(s) 863
GsaI CCCAGC 2 cut(s) 59, 176
HaeIII GGCC 3 cut(s) 387, 407, 887
HapII CCGG 1 cut(s) 15
Hin1II CATG 6 cut(s) 365, 487, 505, 563, 583, 683
HinfI GANTC 5 cut(s) 71, 158, 374, 448, 736
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 29, 242
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 547, 820
Hpy188III TCNNGA 2 cut(s) 419, 917
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 3 cut(s) 190, 529, 871
HpyCH4V TGCA 7 cut(s) 299, 491, 626, 755, 831, 862, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 806
HpyF3I CTNAG 5 cut(s) 31, 141, 237, 471, 819
Hsp92II CATG 6 cut(s) 365, 487, 505, 563, 583, 683
Kzo9I GATC 4 cut(s) 43, 327, 825, 850
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 764
Lsp1109I GCAGC 1 cut(s) 874
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 195, 345, 419, 717
MaeIII GTNAC 2 cut(s) 474, 529
MalI GATC 4 cut(s) 45, 329, 827, 852
MboI GATC 4 cut(s) 43, 327, 825, 850
MboII GAAGA 9 cut(s) 266, 326, 455, 473, 560, 586, 602, 605, 701
MflI RGATCY 2 cut(s) 327, 825
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 7 cut(s) 26, 76, 635, 726, 757, 803, 936
MlyI GAGTC 2 cut(s) 80, 152
MnlI CCTC 4 cut(s) 213, 426, 814, 887
MseI TTAA 4 cut(s) 629, 845, 939, 955
MslI CAYNNNNRTG 3 cut(s) 456, 584, 665
MspA1I CMGCKG 1 cut(s) 865
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 296, 806
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 43, 327, 825, 850
NheI GCTAGC 1 cut(s) 716
NlaIII CATG 6 cut(s) 365, 487, 505, 563, 583, 683
NlaIV GGNNCC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 456
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 374, 448, 736
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 1 cut(s) 864
PleI GAGTC 2 cut(s) 79, 152
PpsI GAGTC 2 cut(s) 79, 152
PshBI ATTAAT 2 cut(s) 629, 939
Psp6I CCWGG 1 cut(s) 378
PspFI CCCAGC 2 cut(s) 55, 172
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 1 cut(s) 405
PstI CTGCAG 1 cut(s) 864
PsuI RGATCY 2 cut(s) 327, 825
PvuII CAGCTG 1 cut(s) 865
RsaI GTAC 3 cut(s) 107, 146, 266
RsaNI GTAC 3 cut(s) 106, 145, 265
RseI CAYNNNNRTG 3 cut(s) 456, 584, 665
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 4 cut(s) 629, 845, 939, 955
SatI GCNGC 1 cut(s) 863
Sau3AI GATC 4 cut(s) 43, 327, 825, 850
Sau96I GGNCC 1 cut(s) 405
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 2 cut(s) 80, 152
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 81, 860
SmiMI CAYNNNNRTG 3 cut(s) 456, 584, 665
Sse9I AATT 7 cut(s) 26, 76, 635, 726, 757, 803, 936
SsiI CCGC 2 cut(s) 125, 783
SspMI CTAG 4 cut(s) 195, 345, 419, 717
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 190, 529, 871
TaqI TCGA 2 cut(s) 853, 916
TasI AATT 7 cut(s) 26, 76, 635, 726, 757, 803, 936
TatI WGTACW 2 cut(s) 144, 264
TfiI GAWTC 3 cut(s) 374, 448, 736
Tru1I TTAA 4 cut(s) 629, 845, 939, 955
Tru9I TTAA 4 cut(s) 629, 845, 939, 955
TseI GCWGC 1 cut(s) 862
TspDTI ATGAA 5 cut(s) 195, 318, 423, 474, 518
VspI ATTAAT 2 cut(s) 629, 939
XapI RAATTY 3 cut(s) 76, 635, 757
XbaI TCTAGA 1 cut(s) 418
XspI CTAG 4 cut(s) 195, 345, 419, 717
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.