Rh3CG112100
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
8972580 .. 8972978
399 bp
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UTR
Exon/CDS
Intron
Rh3CG112100.1

Sequence Viewer

Length: 399 bp
ATGCTTGATGAGTACCTTACATACTTCGATGCGGATGATGACAACTCTCAGTACATTGATTTTGATTCTTGTGGAATGCTGGGGAATGAAAATACTGTTCCTAGTGAACCTCTGGTTGAGCAGAAGTTTGTTACAGGTGAAACTGAGCCACTATATTGCGAAGAACAGAAGTACTTTGACATACCAGAGCATTATGAGATGGATGCAAAGTCAGTTAAAGTTGATTATATAACTTCGGAATCTCATGACAACCTGAAGTTCTTCAACCTATCAGAATATTATGAGATAGAATCAAAAGTGGTCAAAGATGAATACTATGTTGAACAAAGCCATAATCCTGAAGATGTGAGCAAGACATTGGAACCGACTAAGAAATTTTGGTTTTGGAACTTCATCTAG

Protein Analysis

132

Amino Acids

15.77

Weight (kDa)

4.14

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025378)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025129 RLG00000030164
rosa_samantha Rh3CG112100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 2 cut(s) 275, 360
AfaI GTAC 3 cut(s) 14, 53, 173
AgsI TTSAA 2 cut(s) 265, 323
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 149
BccI CCATC 1 cut(s) 193
BfaI CTAG 2 cut(s) 102, 397
BmcAI AGTACT 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 2 cut(s) 19, 193
BseGI GGATG 2 cut(s) 40, 208
BseMII CTCAG 2 cut(s) 62, 135
BseYI CCCAGC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 81
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 61, 136
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 48, 144, 369
BstF5I GGATG 2 cut(s) 40, 208
BtsCI GGATG 2 cut(s) 40, 208
CciI TCATGA 1 cut(s) 244
Csp6I GTAC 3 cut(s) 13, 52, 172
CviAII CATG 1 cut(s) 245
CviJI RGCY 2 cut(s) 148, 330
CviKI_1 RGCY 2 cut(s) 148, 330
CviQI GTAC 3 cut(s) 13, 52, 172
DdeI CTNAG 3 cut(s) 48, 144, 369
Eco57I CTGAAG 2 cut(s) 275, 360
FaeI CATG 1 cut(s) 248
FatI CATG 1 cut(s) 244
FokI GGATG 2 cut(s) 47, 215
FspBI CTAG 2 cut(s) 102, 397
GsaI CCCAGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 248
HinfI GANTC 3 cut(s) 65, 239, 290
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 238, 274
Hpy188III TCNNGA 2 cut(s) 245, 338
Hpy8I GTNNAC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 48, 144, 369
Hsp92II CATG 1 cut(s) 248
LpnPI CCDG 6 cut(s) 65, 98, 120, 198, 266, 351
LweI GCATC 2 cut(s) 19, 193
MaeI CTAG 2 cut(s) 102, 397
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 3 cut(s) 173, 253, 353
MluCI AATT 1 cut(s) 374
MnlI CCTC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 81
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 363
PagI TCATGA 1 cut(s) 244
PctI GAATGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 65, 239, 290
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 363
RsaI GTAC 3 cut(s) 14, 53, 173
RsaNI GTAC 3 cut(s) 13, 52, 172
SaqAI TTAA 1 cut(s) 216
ScaI AGTACT 1 cut(s) 173
SetI ASST 5 cut(s) 18, 112, 139, 255, 270
SfaNI GCATC 2 cut(s) 19, 193
Sse9I AATT 1 cut(s) 374
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 278
SspMI CTAG 2 cut(s) 102, 397
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 374
TatI WGTACW 2 cut(s) 51, 171
TfiI GAWTC 3 cut(s) 65, 239, 290
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 3 cut(s) 102, 324, 382
XapI RAATTY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 102, 397
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.