RLG00000030164

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0025378
Physical Location & Seq
Forward (+)
56639151 .. 56640605
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030164

Sequence Viewer

Length: 1176 bp
ATGCAGGTTCCTTATGGTGGGGCAATACCACAGCTACACAATGGCTGTTCCCCTCAAAATTCTGTTTTCAGTCAACAGCATTTCAGTCGTTTTGTGAATGTGAACACATGCTTTCTTAATGATCCATATTCAAATGCTACTGAAAACCCACCATTGGGTGATGGGCAATTCTTAGAAACTAATAATCTTTCAAATCTAAACAATCCAGTTGAGCCAAATTCTGCAGGTTTTGATATGCTTGATGAGTACCTTATATACTTCGATCAGTACATTGATTTTGATTCCTTTGGAATGCTGGGGAATGAAAATACTATTCGTAGTGAACCTCTGGTTGAGCAGAATGAACTAGCAGAAGACAGAGACAAGATCTTTTATGGGAATACTAGAGAACCTTCCTGCCATGTGATAACTGGTGAGAATCATCAAAGTGCTCAGATGATGGAAATAGACTTGGTCCAATCAGAAATTCAAAGTTTTCAGATTACAAGTGAAGAGTATAGTCTAAGAAACTTAGAAGCTGACGTGGAAAATTTGAAAACTGTCACATTTTCGCAAGAAGAATCCCTGGGCGGCCTTGATGTGCTCTGTGGGGCCAAGAAACCTCAAGAACTTGCTTGTTCATATAGAGAAGAGAATCATAATGATGAAGAGCCGACCAAGTTACAGGACATGATTGCACTAGATACCATGAAAAGTAAAAACATAAAAACCACCGTAACCAAAGGATCTGTAGAAGACAACCAGCATGGGGGTTCATCTTTCAGCATGGTGGTGCTATTCTTCGTTTCTCTCTTTCTTCTTCTCTTGTTTGCATTAATCAAATTTGCCACAGCTGATGATGATTTCACTTTGATGCCCAAACACCATGCCATTGAAGACCTTTTTATTTGGATAACTGGTGCTAGCCGTGGAATTGGGGAGATTCTTGCTAAGCAACTTGCAAATTTGGGAGCCAAGCTCATTATTTCCGCTTGTAATAGTGGAGCTGAATTGGAGCGAGTCAAAAAGCAACTTGGTAAACATGCACCTGATGGTGTGAAAATTTCTGGTGAAGATTGTCTCAATGATGTTGTAGAGAAAGCAGAGTCATACTTTACGAATGTTGGTGTTGATTACATGATCCATTCGAAACATTATGGTTGGTACCCGAGCATATGGTTGAGGGGGAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

392

Amino Acids

43.74

Weight (kDa)

4.68

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 296 - 365 1.7e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025378)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025129 RLG00000030164
rosa_samantha Rh3CG112100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
Acc65I GGTACC 1 cut(s) 1143
AccB1I GGYRCC 1 cut(s) 1143
AciI CCGC 2 cut(s) 570, 969
AclWI GGATC 3 cut(s) 116, 733, 1114
AcsI RAATTY 7 cut(s) 58, 217, 465, 529, 821, 943, 1041
AfaI GTAC 3 cut(s) 248, 269, 1145
AfiI CCNNNNNNNGG 4 cut(s) 17, 154, 155, 748
AgsI TTSAA 5 cut(s) 132, 192, 470, 535, 875
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 34, 518, 833, 958, 986
AluI AGCT 5 cut(s) 34, 518, 833, 958, 986
Alw21I GWGCWC 2 cut(s) 433, 585
Alw26I GTCTC 2 cut(s) 354, 1064
AlwI GGATC 3 cut(s) 116, 733, 1114
Ama87I CYCGRG 1 cut(s) 1147
AoxI GGCC 2 cut(s) 571, 591
ApoI RAATTY 7 cut(s) 58, 217, 465, 529, 821, 943, 1041
AseI ATTAAT 1 cut(s) 815
Asp718I GGTACC 1 cut(s) 1143
AspS9I GGNCC 2 cut(s) 454, 591
AsuHPI GGTGA 3 cut(s) 170, 425, 1061
AsuII TTCGAA 1 cut(s) 1127
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 1147
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 1143
BbsI GAAGAC 3 cut(s) 360, 741, 882
Bbv12I GWGCWC 2 cut(s) 433, 585
BccI CCATC 3 cut(s) 155, 433, 1025
BceAI ACGGC 1 cut(s) 891
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 354, 1064
BfaI CTAG 4 cut(s) 347, 384, 680, 903
BfmI CTRYAG 2 cut(s) 222, 729
BfuAI ACCTGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 366
BisI GCNGC 1 cut(s) 571
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 1147
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 454, 591
BmiI GGNNCC 4 cut(s) 9, 592, 952, 1145
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 843
BmtI GCTAGC 1 cut(s) 906
BpiI GAAGAC 3 cut(s) 360, 741, 882
BplI GAGNNNNNCTC 2 cut(s) 942, 974
Bpu1102I GCTNAGC 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 1127
BpuEI CTTGAG 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 564, 565, 907
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 154, 155, 748
Bse1I ACTGG 3 cut(s) 206, 415, 901
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 3 cut(s) 564, 565, 907
BseLI CCNNNNNNNGG 4 cut(s) 17, 154, 155, 748
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 3 cut(s) 206, 415, 901
BseYI CCCAGC 1 cut(s) 295
BshFI GGCC 2 cut(s) 573, 593
BshNI GGYRCC 1 cut(s) 1143
BsiHKAI GWGCWC 2 cut(s) 433, 585
BsiHKCI CYCGRG 1 cut(s) 1147
BslI CCNNNNNNNGG 4 cut(s) 17, 154, 155, 748
BsmAI GTCTC 2 cut(s) 354, 1064
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 573, 593
BsoBI CYCGRG 1 cut(s) 1147
Bsp119I TTCGAA 1 cut(s) 1127
Bsp1286I GDGCHC 2 cut(s) 433, 585
Bsp143I GATC 5 cut(s) 121, 262, 366, 725, 1119
Bsp1720I GCTNAGC 1 cut(s) 930
BspACI CCGC 2 cut(s) 570, 969
BspANI GGCC 2 cut(s) 573, 593
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 9, 592, 952, 1145
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 215
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 3 cut(s) 116, 733, 1114
BspQI GCTCTTC 1 cut(s) 642
BspT104I TTCGAA 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 1143
BsrI ACTGG 3 cut(s) 206, 415, 901
BssECI CCNNGG 3 cut(s) 564, 565, 907
BssMI GATC 5 cut(s) 121, 262, 366, 725, 1119
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 541, 715
Bst6I CTCTTC 3 cut(s) 486, 624, 642
BstBI TTCGAA 1 cut(s) 1127
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 5 cut(s) 172, 432, 503, 511, 930
BstDSI CCRYGG 1 cut(s) 907
BstKTI GATC 5 cut(s) 124, 265, 369, 728, 1122
BstMAI GTCTC 2 cut(s) 354, 1064
BstMBI GATC 5 cut(s) 121, 262, 366, 725, 1119
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 111, 1025
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 2 cut(s) 222, 729
BstV2I GAAGAC 3 cut(s) 360, 741, 882
BstX2I RGATCY 2 cut(s) 366, 725
BstYI RGATCY 2 cut(s) 366, 725
BsuRI GGCC 2 cut(s) 573, 593
BtgI CCRYGG 1 cut(s) 907
BtrI CACGTC 1 cut(s) 523
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 904
Cfr13I GGNCC 2 cut(s) 454, 591
Csp6I GTAC 3 cut(s) 247, 268, 1144
CviAII CATG 9 cut(s) 108, 401, 670, 688, 746, 766, 866, 1022, 1117
CviQI GTAC 3 cut(s) 247, 268, 1144
DdeI CTNAG 5 cut(s) 172, 432, 503, 511, 930
DpnI GATC 5 cut(s) 123, 264, 368, 727, 1121
DpnII GATC 5 cut(s) 121, 262, 366, 725, 1119
Eam1104I CTCTTC 3 cut(s) 486, 624, 642
EarI CTCTTC 3 cut(s) 486, 624, 642
Eco47I GGWCC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 1147
EcoRII CCWGG 1 cut(s) 564
FaeI CATG 9 cut(s) 111, 404, 673, 691, 749, 769, 869, 1025, 1120
FatI CATG 9 cut(s) 107, 400, 669, 687, 745, 765, 865, 1021, 1116
FauNDI CATATG 1 cut(s) 1154
Fnu4HI GCNGC 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 571
FspBI CTAG 4 cut(s) 347, 384, 680, 903
GluI GCNGC 1 cut(s) 571
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 573, 593
Hin1II CATG 9 cut(s) 111, 404, 673, 691, 749, 769, 869, 1025, 1120
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 7 cut(s) 281, 418, 560, 634, 922, 999, 1085
HphI GGTGA 3 cut(s) 170, 425, 1061
Hpy166II GTNNAC 4 cut(s) 74, 103, 323, 1019
Hpy188I TCNGA 3 cut(s) 435, 463, 480
Hpy188III TCNNGA 1 cut(s) 605
Hpy8I GTNNAC 4 cut(s) 74, 103, 323, 1019
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 2 cut(s) 541, 715
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 6 cut(s) 4, 224, 677, 812, 941, 1025
HpyF3I CTNAG 5 cut(s) 172, 432, 503, 511, 930
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 9 cut(s) 111, 404, 673, 691, 749, 769, 869, 1025, 1120
KpnI GGTACC 1 cut(s) 1147
Kzo9I GATC 5 cut(s) 121, 262, 366, 725, 1119
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 3 cut(s) 950, 983, 994
LweI GCATC 1 cut(s) 843
MaeI CTAG 4 cut(s) 347, 384, 680, 903
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 541, 660, 715
MalI GATC 5 cut(s) 123, 264, 368, 727, 1121
MboI GATC 5 cut(s) 121, 262, 366, 725, 1119
MflI RGATCY 2 cut(s) 366, 725
MhlI GDGCHC 2 cut(s) 433, 585
MlyI GAGTC 2 cut(s) 1008, 1094
MnlI CCTC 4 cut(s) 63, 336, 612, 1155
MseI TTAA 3 cut(s) 117, 815, 1174
MslI CAYNNNNRTG 4 cut(s) 426, 642, 770, 851
MspA1I CMGCKG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 566
NdeI CATATG 1 cut(s) 1154
NdeII GATC 5 cut(s) 121, 262, 366, 725, 1119
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 9 cut(s) 111, 404, 673, 691, 749, 769, 869, 1025, 1120
NlaIV GGNNCC 4 cut(s) 9, 592, 952, 1145
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 2 cut(s) 111, 1025
NspV TTCGAA 1 cut(s) 1127
PasI CCCWGGG 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 642
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 5 cut(s) 281, 418, 560, 634, 922
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 572
PleI GAGTC 2 cut(s) 1007, 1093
PpsI GAGTC 2 cut(s) 1007, 1093
PshBI ATTAAT 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 9, 592, 952, 1145
PspPI GGNCC 2 cut(s) 454, 591
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 366, 725
PsyI GACNNNGTC 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 248, 269, 1145
RsaNI GTAC 3 cut(s) 247, 268, 1144
RseI CAYNNNNRTG 4 cut(s) 426, 642, 770, 851
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 117, 815, 1174
SatI GCNGC 1 cut(s) 571
Sau3AI GATC 5 cut(s) 121, 262, 366, 725, 1119
Sau96I GGNCC 2 cut(s) 454, 591
SchI GAGTC 2 cut(s) 1008, 1094
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 2 cut(s) 433, 585
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 2 cut(s) 222, 729
SfuI TTCGAA 1 cut(s) 1127
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 4 cut(s) 426, 642, 770, 851
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SsiI CCGC 2 cut(s) 570, 969
SspMI CTAG 4 cut(s) 347, 384, 680, 903
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 541, 715
TaiI ACGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 261, 1127
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 5 cut(s) 281, 418, 560, 634, 922
Tru1I TTAA 3 cut(s) 117, 815, 1174
Tru9I TTAA 3 cut(s) 117, 815, 1174
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 6 cut(s) 318, 357, 609, 660, 704, 744
Tth111I GACNNNGTC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 454
VspI ATTAAT 1 cut(s) 815
XapI RAATTY 7 cut(s) 58, 217, 465, 529, 821, 943, 1041
XceI RCATGY 2 cut(s) 111, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 4 cut(s) 347, 384, 680, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.